RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 LMBR1LQ6UX01 489 aa17.5■□□□□ 0.39
SHKBP1-208ENST00000595726 DEFB118Q96PH6 123 aa17.5■□□□□ 0.39
SHKBP1-208ENST00000595726 COL25A1Q9BXS0 654 aaPredicted RBP17.5■□□□□ 0.39
SHKBP1-208ENST00000595726 CHMP4AQ9BY43 222 aa17.5■□□□□ 0.39
SHKBP1-208ENST00000595726 MYH16Q9H6N6 1097 aa17.5■□□□□ 0.39
SHKBP1-208ENST00000595726 CNNM1Q9NRU3 951 aa17.5■□□□□ 0.39
SHKBP1-208ENST00000595726 ARAP2Q8WZ64 1704 aa17.5■□□□□ 0.39
SHKBP1-208ENST00000595726 ADCY3O60266 1144 aa17.49■□□□□ 0.39
SHKBP1-208ENST00000595726 CHAF1AQ13111 956 aaPredicted RBP17.49■□□□□ 0.39
SHKBP1-208ENST00000595726 SLAIN1Q8ND83 568 aa17.49■□□□□ 0.39
SHKBP1-208ENST00000595726 LINS1Q8NG48 757 aa17.49■□□□□ 0.39
SHKBP1-208ENST00000595726 PAWRQ96IZ0 340 aaKnown RBP17.49■□□□□ 0.39
SHKBP1-208ENST00000595726 GDF15Q99988 308 aa17.49■□□□□ 0.39
SHKBP1-208ENST00000595726 INHAP05111 366 aa17.48■□□□□ 0.39
SHKBP1-208ENST00000595726 FCGRTP55899 365 aa17.48■□□□□ 0.39
SHKBP1-208ENST00000595726 TAF7LQ5H9L4 462 aa17.48■□□□□ 0.39
SHKBP1-208ENST00000595726 DIS3LQ8TF46 1054 aaKnown RBP17.48■□□□□ 0.39
SHKBP1-208ENST00000595726 DNAAF4Q8WXU2 420 aa17.48■□□□□ 0.39
SHKBP1-208ENST00000595726 ZMYND8Q9ULU4 1186 aaPredicted RBP17.48■□□□□ 0.39
SHKBP1-208ENST00000595726 STXBP5LQ9Y2K9 1186 aa17.48■□□□□ 0.39
SHKBP1-208ENST00000595726 A0A1B0GUL6 1792 aa17.48■□□□□ 0.39
SHKBP1-208ENST00000595726 BCRP11274 1271 aa17.47■□□□□ 0.39
SHKBP1-208ENST00000595726 FLT3LGP49771 235 aa17.47■□□□□ 0.39
SHKBP1-208ENST00000595726 FLIIQ13045 1269 aa17.47■□□□□ 0.39
SHKBP1-208ENST00000595726 FKBP5Q13451 457 aaPredicted RBP17.47■□□□□ 0.39
SHKBP1-208ENST00000595726 CCDC57Q2TAC2 916 aa17.47■□□□□ 0.39
SHKBP1-208ENST00000595726 GPAT2Q6NUI2 795 aa17.47■□□□□ 0.39
SHKBP1-208ENST00000595726 PUS3Q9BZE2 481 aaKnown RBP17.47■□□□□ 0.39
SHKBP1-208ENST00000595726 MTMR10Q9NXD2 777 aa17.47■□□□□ 0.39
SHKBP1-208ENST00000595726 KCNH4Q9UQ05 1017 aa17.47■□□□□ 0.39
SHKBP1-208ENST00000595726 PRUNE2Q8WUY3 3088 aa17.46■□□□□ 0.39
SHKBP1-208ENST00000595726 BCAMP50895 628 aa17.46■□□□□ 0.39
SHKBP1-208ENST00000595726 APOBEC3HQ6NTF7 200 aaKnown RBP17.46■□□□□ 0.39
SHKBP1-208ENST00000595726 FAM83AQ86UY5 434 aa17.46■□□□□ 0.39
SHKBP1-208ENST00000595726 C7orf61Q8IZ16 206 aa17.46■□□□□ 0.39
SHKBP1-208ENST00000595726 TEKT1Q969V4 418 aa17.46■□□□□ 0.39
SHKBP1-208ENST00000595726 ZNF341Q9BYN7 854 aa17.46■□□□□ 0.39
SHKBP1-208ENST00000595726 SPTBN5Q9NRC6 3674 aaKnown RBP17.45■□□□□ 0.38
SHKBP1-208ENST00000595726 SYN1P17600 705 aa17.45■□□□□ 0.38
SHKBP1-208ENST00000595726 BMP8BP34820 402 aa17.45■□□□□ 0.38
SHKBP1-208ENST00000595726 UBE4AQ14139 1066 aa17.45■□□□□ 0.38
SHKBP1-208ENST00000595726 TWISTNBQ3B726 338 aaPredicted RBP17.45■□□□□ 0.38
SHKBP1-208ENST00000595726 DCAF15Q66K64 600 aa17.45■□□□□ 0.38
SHKBP1-208ENST00000595726 HDLBPQ00341 1268 aaKnown RBP17.44■□□□□ 0.38
SHKBP1-208ENST00000595726 GPR153Q6NV75 609 aa17.44■□□□□ 0.38
SHKBP1-208ENST00000595726 HOOK2Q96ED9 719 aa17.44■□□□□ 0.38
SHKBP1-208ENST00000595726 ZDHHC15Q96MV8 337 aa17.44■□□□□ 0.38
SHKBP1-208ENST00000595726 CRISPLD2Q9H0B8 497 aa17.44■□□□□ 0.38
SHKBP1-208ENST00000595726 TMOD2Q9NZR1 351 aa17.44■□□□□ 0.38
SHKBP1-208ENST00000595726 TAOK2Q9UL54 1235 aa17.44■□□□□ 0.38
SHKBP1-208ENST00000595726 DNAH12Q6ZR08 3092 aa17.44■□□□□ 0.38
SHKBP1-208ENST00000595726 F6X3S4 739 aa17.43■□□□□ 0.38
SHKBP1-208ENST00000595726 NECAB2Q7Z6G3 386 aa17.43■□□□□ 0.38
SHKBP1-208ENST00000595726 FBXO33Q7Z6M2 555 aa17.43■□□□□ 0.38
SHKBP1-208ENST00000595726 PARK7Q99497 189 aaKnown RBP17.43■□□□□ 0.38
SHKBP1-208ENST00000595726 PAK6Q9NQU5 681 aaPredicted RBP17.43■□□□□ 0.38
SHKBP1-208ENST00000595726 ZNF112Q9UJU3 913 aa17.43■□□□□ 0.38
SHKBP1-208ENST00000595726 FRAT2O75474 233 aaPredicted RBP17.42■□□□□ 0.38
SHKBP1-208ENST00000595726 TCP10Q12799 353 aa17.42■□□□□ 0.38
SHKBP1-208ENST00000595726 FKBP1CQ5VVH2 108 aa17.42■□□□□ 0.38
SHKBP1-208ENST00000595726 VPS37DQ86XT2 251 aa17.42■□□□□ 0.38
SHKBP1-208ENST00000595726 ALPK3Q96L96 1907 aa17.41■□□□□ 0.38
SHKBP1-208ENST00000595726 MAGEA10P43363 369 aaPredicted RBP17.41■□□□□ 0.38
SHKBP1-208ENST00000595726 LRIT3Q3SXY7 679 aa17.41■□□□□ 0.38
SHKBP1-208ENST00000595726 PXYLP1Q8TE99 480 aa17.41■□□□□ 0.38
SHKBP1-208ENST00000595726 TNPO2O14787 897 aaKnown RBP17.4■□□□□ 0.38
SHKBP1-208ENST00000595726 IRF5Q13568 498 aa17.4■□□□□ 0.38
SHKBP1-208ENST00000595726 CCDC184Q52MB2 194 aa17.4■□□□□ 0.38
SHKBP1-208ENST00000595726 BEND3Q5T5X7 828 aa17.4■□□□□ 0.38
SHKBP1-208ENST00000595726 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.4■□□□□ 0.38
SHKBP1-208ENST00000595726 FAM151AQ8WW52 585 aa17.4■□□□□ 0.38
SHKBP1-208ENST00000595726 CXCL11O14625 94 aa17.39■□□□□ 0.37
SHKBP1-208ENST00000595726 NFIAQ12857 509 aa17.39■□□□□ 0.37
SHKBP1-208ENST00000595726 TDHQ8IZJ6 230 aa17.39■□□□□ 0.37
SHKBP1-208ENST00000595726 TBC1D22AQ8WUA7 517 aa17.39■□□□□ 0.37
SHKBP1-208ENST00000595726 MRIQ9BWK5 157 aa17.39■□□□□ 0.37
SHKBP1-208ENST00000595726 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.39■□□□□ 0.37
SHKBP1-208ENST00000595726 MGAMO43451 1857 aa17.38■□□□□ 0.37
SHKBP1-208ENST00000595726 GADL1Q6ZQY3 521 aa17.38■□□□□ 0.37
SHKBP1-208ENST00000595726 ZFPM1Q8IX07 1006 aa17.38■□□□□ 0.37
SHKBP1-208ENST00000595726 ZHX2Q9Y6X8 837 aa17.38■□□□□ 0.37
SHKBP1-208ENST00000595726 GRM8O00222 908 aa17.37■□□□□ 0.37
SHKBP1-208ENST00000595726 ANP32CO43423 234 aa17.37■□□□□ 0.37
SHKBP1-208ENST00000595726 NOL9Q5SY16 702 aaKnown RBP17.37■□□□□ 0.37
SHKBP1-208ENST00000595726 HHIPL2Q6UWX4 724 aa17.37■□□□□ 0.37
SHKBP1-208ENST00000595726 UBE2OQ9C0C9 1292 aaKnown RBP17.37■□□□□ 0.37
SHKBP1-208ENST00000595726 RPAP1Q9BWH6 1393 aaPredicted RBP17.37■□□□□ 0.37
SHKBP1-208ENST00000595726 A0A0G2JLL6 359 aaPredicted RBP17.36■□□□□ 0.37
SHKBP1-208ENST00000595726 SLURP2P0DP57 97 aa17.36■□□□□ 0.37
SHKBP1-208ENST00000595726 TRIM32Q13049 653 aa17.36■□□□□ 0.37
SHKBP1-208ENST00000595726 LRRC24Q50LG9 513 aa17.36■□□□□ 0.37
SHKBP1-208ENST00000595726 CAVIN4Q5BKX8 364 aa17.36■□□□□ 0.37
SHKBP1-208ENST00000595726 CDC42EP5Q6NZY7 148 aa17.36■□□□□ 0.37
SHKBP1-208ENST00000595726 PRRT2Q7Z6L0 340 aaPredicted RBP17.36■□□□□ 0.37
SHKBP1-208ENST00000595726 NBPF3Q9H094 633 aa17.36■□□□□ 0.37
SHKBP1-208ENST00000595726 FAM198AQ9UFP1 575 aa17.36■□□□□ 0.37
SHKBP1-208ENST00000595726 CAPN2P17655 700 aa17.35■□□□□ 0.37
SHKBP1-208ENST00000595726 FASTKD5Q7L8L6 764 aaKnown RBP17.35■□□□□ 0.37
SHKBP1-208ENST00000595726 ANKRD13CQ8N6S4 541 aa17.35■□□□□ 0.37
SHKBP1-208ENST00000595726 KAZALD1Q96I82 304 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms