RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	CCDC102A	Q96A19	550 aa		11.27	□□□□□ -0.61
DNMT1-223	ENST00000591239	TMEM39B	Q9GZU3	492 aa		11.27	□□□□□ -0.61
DNMT1-223	ENST00000591239	IL1RAPL2	Q9NP60	686 aa		11.27	□□□□□ -0.61
DNMT1-223	ENST00000591239	SNRK	Q9NRH2	765 aa		11.27	□□□□□ -0.61
DNMT1-223	ENST00000591239	WBP1L	Q9NX94	342 aa		11.27	□□□□□ -0.61
DNMT1-223	ENST00000591239	TMOD2	Q9NZR1	351 aa		11.27	□□□□□ -0.61
DNMT1-223	ENST00000591239	PPP1R12B	O60237	982 aa	Predicted RBP	11.26	□□□□□ -0.61
DNMT1-223	ENST00000591239	NOG	Q13253	232 aa		11.26	□□□□□ -0.61
DNMT1-223	ENST00000591239	CDC42EP5	Q6NZY7	148 aa		11.26	□□□□□ -0.61
DNMT1-223	ENST00000591239	FAM83A	Q86UY5	434 aa		11.26	□□□□□ -0.61
DNMT1-223	ENST00000591239	CLASRP	Q8N2M8	674 aa	Known RBP	11.26	□□□□□ -0.61
DNMT1-223	ENST00000591239	FAM163A	Q96GL9	167 aa	Predicted RBP	11.26	□□□□□ -0.61
DNMT1-223	ENST00000591239	TEPSIN	Q96N21	525 aa		11.26	□□□□□ -0.61
DNMT1-223	ENST00000591239	LRP2BP	Q9P2M1	347 aa		11.26	□□□□□ -0.61
DNMT1-223	ENST00000591239	ANGEL1	Q9UNK9	670 aa	Known RBP	11.26	□□□□□ -0.61
DNMT1-223	ENST00000591239	FZD1	Q9UP38	647 aa		11.26	□□□□□ -0.61
DNMT1-223	ENST00000591239	SSC5D	A1L4H1	1573 aa		11.25	□□□□□ -0.61
DNMT1-223	ENST00000591239	CYP2E1	P05181	493 aa	Predicted RBP	11.25	□□□□□ -0.61
DNMT1-223	ENST00000591239	SLC10A3	P09131	477 aa		11.25	□□□□□ -0.61
DNMT1-223	ENST00000591239	ZAP70	P43403	619 aa		11.25	□□□□□ -0.61
DNMT1-223	ENST00000591239	MAP3K11	Q16584	847 aa		11.25	□□□□□ -0.61
DNMT1-223	ENST00000591239	LDLRAD1	Q5T700	205 aa		11.25	□□□□□ -0.61
DNMT1-223	ENST00000591239	RASAL3	Q86YV0	1011 aa		11.25	□□□□□ -0.61
DNMT1-223	ENST00000591239	CDAN1	Q8IWY9	1227 aa		11.25	□□□□□ -0.61
DNMT1-223	ENST00000591239	ZNF384	Q8TF68	577 aa		11.25	□□□□□ -0.61
DNMT1-223	ENST00000591239	AIDA	Q96BJ3	306 aa		11.25	□□□□□ -0.61
DNMT1-223	ENST00000591239	NSUN4	Q96CB9	384 aa	Known RBP	11.25	□□□□□ -0.61
DNMT1-223	ENST00000591239	CRBN	Q96SW2	442 aa		11.25	□□□□□ -0.61
DNMT1-223	ENST00000591239	ZIC5	Q96T25	663 aa		11.25	□□□□□ -0.61
DNMT1-223	ENST00000591239	BCL11A	Q9H165	835 aa		11.25	□□□□□ -0.61
DNMT1-223	ENST00000591239	USP40	Q9NVE5	1235 aa		11.25	□□□□□ -0.61
DNMT1-223	ENST00000591239	RAI14	Q9P0K7	980 aa		11.25	□□□□□ -0.61
DNMT1-223	ENST00000591239	GAK	O14976	1311 aa		11.25	□□□□□ -0.61
DNMT1-223	ENST00000591239	MYH2	Q9UKX2	1941 aa		11.25	□□□□□ -0.61
DNMT1-223	ENST00000591239	THSD7B	Q9C0I4	1608 aa		11.24	□□□□□ -0.61
DNMT1-223	ENST00000591239	FOXN1	O15353	648 aa		11.24	□□□□□ -0.61
DNMT1-223	ENST00000591239	USP2	O75604	605 aa	Predicted RBP	11.24	□□□□□ -0.61
DNMT1-223	ENST00000591239	IFIT2	P09913	472 aa	Known RBP	11.24	□□□□□ -0.61
DNMT1-223	ENST00000591239	GSTO1	P78417	241 aa		11.24	□□□□□ -0.61
DNMT1-223	ENST00000591239	PCDHB15	Q9Y5E8	787 aa		11.24	□□□□□ -0.61
DNMT1-223	ENST00000591239	AKAP11	Q9UKA4	1901 aa		11.24	□□□□□ -0.61
DNMT1-223	ENST00000591239	MROH7-TTC4	A0A0A0MT08	1334 aa		11.24	□□□□□ -0.61
DNMT1-223	ENST00000591239	GPR75-ASB3	A0A0A6YYF3	556 aa		11.23	□□□□□ -0.61
DNMT1-223	ENST00000591239	LDHC	P07864	332 aa		11.23	□□□□□ -0.61
DNMT1-223	ENST00000591239	BTD	P43251	543 aa		11.23	□□□□□ -0.61
DNMT1-223	ENST00000591239	IREB2	P48200	963 aa	Known RBP	11.23	□□□□□ -0.61
DNMT1-223	ENST00000591239	KIF23	Q02241	960 aa	Predicted RBP	11.23	□□□□□ -0.61
DNMT1-223	ENST00000591239	TCP10	Q12799	353 aa		11.23	□□□□□ -0.61
DNMT1-223	ENST00000591239	NFIA	Q12857	509 aa		11.23	□□□□□ -0.61
DNMT1-223	ENST00000591239	FAM151A	Q8WW52	585 aa		11.23	□□□□□ -0.61
DNMT1-223	ENST00000591239	SLC10A4	Q96EP9	437 aa		11.23	□□□□□ -0.61
DNMT1-223	ENST00000591239	BEGAIN	Q9BUH8	593 aa		11.23	□□□□□ -0.61
DNMT1-223	ENST00000591239	LRRCC1	Q9C099	1032 aa		11.23	□□□□□ -0.61
DNMT1-223	ENST00000591239	DCTPP1	Q9H773	170 aa		11.23	□□□□□ -0.61
DNMT1-223	ENST00000591239	FAM198A	Q9UFP1	575 aa		11.23	□□□□□ -0.61
DNMT1-223	ENST00000591239	UNCX	A6NJT0	531 aa		11.22	□□□□□ -0.61
DNMT1-223	ENST00000591239	NAA16	Q6N069	864 aa	Predicted RBP	11.22	□□□□□ -0.61
DNMT1-223	ENST00000591239	HOOK2	Q96ED9	719 aa		11.22	□□□□□ -0.61
DNMT1-223	ENST00000591239	CLMN	Q96JQ2	1002 aa		11.22	□□□□□ -0.61
DNMT1-223	ENST00000591239	IDI2	Q9BXS1	227 aa		11.22	□□□□□ -0.61
DNMT1-223	ENST00000591239	PIH1D3	Q9NQM4	214 aa	Known RBP	11.22	□□□□□ -0.61
DNMT1-223	ENST00000591239	NDUFB9	Q9Y6M9	179 aa		11.22	□□□□□ -0.61
DNMT1-223	ENST00000591239	RPAP1	Q9BWH6	1393 aa	Predicted RBP	11.21	□□□□□ -0.61
DNMT1-223	ENST00000591239	SMARCA5	O60264	1052 aa	Predicted RBP	11.21	□□□□□ -0.61
DNMT1-223	ENST00000591239	IGSF3	O75054	1194 aa		11.21	□□□□□ -0.61
DNMT1-223	ENST00000591239	WDHD1	O75717	1129 aa	Predicted RBP	11.21	□□□□□ -0.61
DNMT1-223	ENST00000591239	CTCF	P49711	727 aa	Predicted RBP	11.21	□□□□□ -0.61
DNMT1-223	ENST00000591239	RGS3	P49796	1198 aa		11.21	□□□□□ -0.61
DNMT1-223	ENST00000591239	RHBDL3	P58872	404 aa		11.21	□□□□□ -0.61
DNMT1-223	ENST00000591239	ZFPM1	Q8IX07	1006 aa		11.21	□□□□□ -0.61
DNMT1-223	ENST00000591239	ANKRD13A	Q8IZ07	590 aa		11.21	□□□□□ -0.61
DNMT1-223	ENST00000591239	CSRNP1	Q96S65	589 aa		11.21	□□□□□ -0.61
DNMT1-223	ENST00000591239	ANTXR1	Q9H6X2	564 aa		11.21	□□□□□ -0.61
DNMT1-223	ENST00000591239	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.21	□□□□□ -0.61
DNMT1-223	ENST00000591239	CA12	O43570	354 aa		11.2	□□□□□ -0.62
DNMT1-223	ENST00000591239	ENTPD3	O75355	529 aa		11.2	□□□□□ -0.62
DNMT1-223	ENST00000591239	IDH1	O75874	414 aa	Known RBP	11.2	□□□□□ -0.62
DNMT1-223	ENST00000591239	MAP4K4	O95819	1239 aa	Predicted RBP	11.2	□□□□□ -0.62
DNMT1-223	ENST00000591239	MKRN3	Q13064	507 aa	Known RBP	11.2	□□□□□ -0.62
DNMT1-223	ENST00000591239	SPRYD7	Q5W111	196 aa		11.2	□□□□□ -0.62
DNMT1-223	ENST00000591239	DCAF15	Q66K64	600 aa		11.2	□□□□□ -0.62
DNMT1-223	ENST00000591239	MIGA2	Q7L4E1	593 aa		11.2	□□□□□ -0.62
DNMT1-223	ENST00000591239	REM2	Q8IYK8	340 aa	Predicted RBP	11.2	□□□□□ -0.62
DNMT1-223	ENST00000591239	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	11.2	□□□□□ -0.62
DNMT1-223	ENST00000591239	NOL10	Q9BSC4	688 aa	Known RBP	11.2	□□□□□ -0.62
DNMT1-223	ENST00000591239	DDX4	Q9NQI0	724 aa	Known RBP	11.2	□□□□□ -0.62
DNMT1-223	ENST00000591239	SUPT16H	Q9Y5B9	1047 aa	Known RBP	11.2	□□□□□ -0.62
DNMT1-223	ENST00000591239	MYO5A	Q9Y4I1	1855 aa	Known RBP	11.19	□□□□□ -0.62
DNMT1-223	ENST00000591239	RFX7	Q2KHR2	1363 aa		11.19	□□□□□ -0.62
DNMT1-223	ENST00000591239	BAG3	O95817	575 aa		11.19	□□□□□ -0.62
DNMT1-223	ENST00000591239	HSPA8	P11142	646 aa	Known RBP	11.19	□□□□□ -0.62
DNMT1-223	ENST00000591239	ATP5J	P18859	108 aa		11.19	□□□□□ -0.62
DNMT1-223	ENST00000591239	LBX1	P52954	281 aa		11.19	□□□□□ -0.62
DNMT1-223	ENST00000591239	MAP3K9	P80192	1104 aa		11.19	□□□□□ -0.62
DNMT1-223	ENST00000591239	MAP3K12	Q12852	859 aa		11.19	□□□□□ -0.62
DNMT1-223	ENST00000591239	PICALM	Q13492	652 aa		11.19	□□□□□ -0.62
DNMT1-223	ENST00000591239	AAMP	Q13685	434 aa		11.19	□□□□□ -0.62
DNMT1-223	ENST00000591239	VGLL4	Q14135	290 aa		11.19	□□□□□ -0.62
DNMT1-223	ENST00000591239	TTF1	Q15361	905 aa	Predicted RBP	11.19	□□□□□ -0.62
DNMT1-223	ENST00000591239	COL13A1	Q5TAT6	717 aa	Predicted RBP	11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms