RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 CRNKL1Q9BZJ0 848 aaKnown RBP12.85□□□□□ -0.35
SS18-213ENST00000579640 ARMT1Q9H993 441 aa12.85□□□□□ -0.35
SS18-213ENST00000579640 AATFQ9NY61 560 aaKnown RBP eCLIP12.85□□□□□ -0.35
SS18-213ENST00000579640 ZNF541Q9H0D2 1346 aa12.85□□□□□ -0.35
SS18-213ENST00000579640 PATL2C9JE40 543 aaKnown RBP12.85□□□□□ -0.35
SS18-213ENST00000579640 SCNN1DP51172 638 aa12.85□□□□□ -0.35
SS18-213ENST00000579640 PTH1RQ03431 593 aa12.85□□□□□ -0.35
SS18-213ENST00000579640 ZBTB12Q9Y330 459 aaPredicted RBP12.85□□□□□ -0.35
SS18-213ENST00000579640 U3KPZ7 1027 aaPredicted RBP12.85□□□□□ -0.35
SS18-213ENST00000579640 DYNLL1P63167 89 aaKnown RBP12.84□□□□□ -0.35
SS18-213ENST00000579640 ALX1Q15699 326 aa12.84□□□□□ -0.35
SS18-213ENST00000579640 GIMAP6Q6P9H5 292 aa12.84□□□□□ -0.35
SS18-213ENST00000579640 C22orf23Q9BZE7 217 aa12.84□□□□□ -0.35
SS18-213ENST00000579640 NACAP1Q9BZK3 213 aa12.84□□□□□ -0.35
SS18-213ENST00000579640 CTNNA3Q9UI47 895 aa12.84□□□□□ -0.35
SS18-213ENST00000579640 GJA3Q9Y6H8 435 aa12.84□□□□□ -0.35
SS18-213ENST00000579640 SLC4A4Q9Y6R1 1079 aa12.84□□□□□ -0.35
SS18-213ENST00000579640 ZMYM6O95789 1325 aa12.84□□□□□ -0.35
SS18-213ENST00000579640 RBM25P49756 843 aaKnown RBP12.83□□□□□ -0.35
SS18-213ENST00000579640 ZNF280AP59817 542 aaPredicted RBP12.83□□□□□ -0.35
SS18-213ENST00000579640 CFAP100Q494V2 611 aa12.83□□□□□ -0.35
SS18-213ENST00000579640 VPS53Q5VIR6 699 aa12.83□□□□□ -0.35
SS18-213ENST00000579640 MTMR14Q8NCE2 650 aa12.83□□□□□ -0.35
SS18-213ENST00000579640 APPP05067 770 aa12.83□□□□□ -0.36
SS18-213ENST00000579640 HSPA4P34932 840 aa12.83□□□□□ -0.36
SS18-213ENST00000579640 GMPSP49915 693 aaPredicted RBP12.83□□□□□ -0.36
SS18-213ENST00000579640 RBM5P52756 815 aaKnown RBP eCLIP12.83□□□□□ -0.36
SS18-213ENST00000579640 RNF20Q5VTR2 975 aa12.83□□□□□ -0.36
SS18-213ENST00000579640 APOBEC3HQ6NTF7 200 aaKnown RBP12.83□□□□□ -0.36
SS18-213ENST00000579640 DDRGK1Q96HY6 314 aa12.83□□□□□ -0.36
SS18-213ENST00000579640 TBC1D32Q96NH3 1257 aa12.83□□□□□ -0.36
SS18-213ENST00000579640 ATP8A2Q9NTI2 1148 aa12.83□□□□□ -0.36
SS18-213ENST00000579640 RBM8AQ9Y5S9 174 aaKnown RBP12.83□□□□□ -0.36
SS18-213ENST00000579640 GSG1L2A8MUP6 293 aa12.82□□□□□ -0.36
SS18-213ENST00000579640 RHBDL3P58872 404 aa12.82□□□□□ -0.36
SS18-213ENST00000579640 DLGAP5Q15398 846 aa12.82□□□□□ -0.36
SS18-213ENST00000579640 DPY19L2Q6NUT2 758 aa12.82□□□□□ -0.36
SS18-213ENST00000579640 TEX11Q8IYF3 940 aa12.82□□□□□ -0.36
SS18-213ENST00000579640 IFNL3Q8IZI9 196 aa12.82□□□□□ -0.36
SS18-213ENST00000579640 SH3RF3Q8TEJ3 882 aaPredicted RBP12.82□□□□□ -0.36
SS18-213ENST00000579640 FOXP2O15409 715 aa12.81□□□□□ -0.36
SS18-213ENST00000579640 PRKAB2O43741 272 aa12.81□□□□□ -0.36
SS18-213ENST00000579640 USP5P45974 858 aa12.81□□□□□ -0.36
SS18-213ENST00000579640 ANAPC15P60006 121 aa12.81□□□□□ -0.36
SS18-213ENST00000579640 NECTIN1Q15223 517 aa12.81□□□□□ -0.36
SS18-213ENST00000579640 NAPBQ9H115 298 aa12.81□□□□□ -0.36
SS18-213ENST00000579640 USP40Q9NVE5 1235 aa12.81□□□□□ -0.36
SS18-213ENST00000579640 ADAMTSL1Q8N6G6 1762 aa12.81□□□□□ -0.36
SS18-213ENST00000579640 SPDYE2BA6NHP3 402 aa12.81□□□□□ -0.36
SS18-213ENST00000579640 H7C1D1 291 aa12.81□□□□□ -0.36
SS18-213ENST00000579640 FGAP02671 866 aa12.81□□□□□ -0.36
SS18-213ENST00000579640 SPDYE6P0CI01 402 aa12.81□□□□□ -0.36
SS18-213ENST00000579640 ZKSCAN1P17029 563 aaPredicted RBP12.81□□□□□ -0.36
SS18-213ENST00000579640 TDO2P48775 406 aa12.81□□□□□ -0.36
SS18-213ENST00000579640 MICALL2Q8IY33 904 aa12.81□□□□□ -0.36
SS18-213ENST00000579640 SDR42E1Q8WUS8 393 aa12.81□□□□□ -0.36
SS18-213ENST00000579640 KCNB2Q92953 911 aa12.81□□□□□ -0.36
SS18-213ENST00000579640 EPB41L4AQ9HCS5 686 aaPredicted RBP12.81□□□□□ -0.36
SS18-213ENST00000579640 MYOZ2Q9NPC6 264 aa12.81□□□□□ -0.36
SS18-213ENST00000579640 CNOT7Q9UIV1 285 aaKnown RBP12.81□□□□□ -0.36
SS18-213ENST00000579640 ECM29Q5VYK3 1845 aa12.8□□□□□ -0.36
SS18-213ENST00000579640 NPM3O75607 178 aaKnown RBP12.8□□□□□ -0.36
SS18-213ENST00000579640 IMMTQ16891 758 aaKnown RBP12.8□□□□□ -0.36
SS18-213ENST00000579640 CREB3L3Q68CJ9 461 aa12.8□□□□□ -0.36
SS18-213ENST00000579640 CDC42EP5Q6NZY7 148 aa12.8□□□□□ -0.36
SS18-213ENST00000579640 ZBED3Q96IU2 234 aaPredicted RBP12.8□□□□□ -0.36
SS18-213ENST00000579640 DCP1AQ9NPI6 582 aaPredicted RBP12.8□□□□□ -0.36
SS18-213ENST00000579640 GPRC5DQ9NZD1 345 aa12.8□□□□□ -0.36
SS18-213ENST00000579640 TMOD2Q9NZR1 351 aa12.8□□□□□ -0.36
SS18-213ENST00000579640 CDK5RAP2Q96SN8 1893 aa12.8□□□□□ -0.36
SS18-213ENST00000579640 FOCADQ5VW36 1801 aa12.8□□□□□ -0.36
SS18-213ENST00000579640 SLC27A2O14975 620 aa12.79□□□□□ -0.36
SS18-213ENST00000579640 MYO1BO43795 1136 aa12.79□□□□□ -0.36
SS18-213ENST00000579640 DDNO94850 711 aaPredicted RBP12.79□□□□□ -0.36
SS18-213ENST00000579640 LMOD1P29536 600 aaPredicted RBP12.79□□□□□ -0.36
SS18-213ENST00000579640 TSGA10IPQ3SY00 556 aa12.79□□□□□ -0.36
SS18-213ENST00000579640 AMOTL1Q8IY63 956 aa12.79□□□□□ -0.36
SS18-213ENST00000579640 TGFBRAP1Q8WUH2 860 aa12.79□□□□□ -0.36
SS18-213ENST00000579640 IL17RAQ96F46 866 aa12.79□□□□□ -0.36
SS18-213ENST00000579640 PRMT6Q96LA8 375 aaPredicted RBP12.79□□□□□ -0.36
SS18-213ENST00000579640 IDI2Q9BXS1 227 aa12.79□□□□□ -0.36
SS18-213ENST00000579640 ARPP21Q9UBL0 812 aaPredicted RBP12.79□□□□□ -0.36
SS18-213ENST00000579640 MKRN1Q9UHC7 482 aaKnown RBP12.79□□□□□ -0.36
SS18-213ENST00000579640 NAV1Q8NEY1 1877 aa12.79□□□□□ -0.36
SS18-213ENST00000579640 GOLGB1Q14789 3259 aaKnown RBP12.79□□□□□ -0.36
SS18-213ENST00000579640 GLTPD2A6NH11 291 aa12.78□□□□□ -0.36
SS18-213ENST00000579640 ZNF213O14771 459 aa12.78□□□□□ -0.36
SS18-213ENST00000579640 WDHD1O75717 1129 aaPredicted RBP12.78□□□□□ -0.36
SS18-213ENST00000579640 KRT32Q14532 448 aa12.78□□□□□ -0.36
SS18-213ENST00000579640 SBK1Q52WX2 424 aa12.78□□□□□ -0.36
SS18-213ENST00000579640 L3MBTL3Q96JM7 780 aaPredicted RBP12.78□□□□□ -0.36
SS18-213ENST00000579640 TSHZ2Q9NRE2 1034 aa12.78□□□□□ -0.36
SS18-213ENST00000579640 LAMA4Q16363 1823 aa12.78□□□□□ -0.36
SS18-213ENST00000579640 FLT1P17948 1338 aa12.78□□□□□ -0.36
SS18-213ENST00000579640 WNT10BO00744 389 aa12.78□□□□□ -0.36
SS18-213ENST00000579640 CYP21A2P08686 494 aa12.78□□□□□ -0.36
SS18-213ENST00000579640 SPDYE2Q495Y8 402 aa12.78□□□□□ -0.36
SS18-213ENST00000579640 FKBP1CQ5VVH2 108 aa12.78□□□□□ -0.36
SS18-213ENST00000579640 IL27Q8NEV9 243 aa12.78□□□□□ -0.36
SS18-213ENST00000579640 PCDHAC2Q9Y5I4 1007 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms