RNA–Protein interactions for RNA: ENST00000577393.1

PPP4R1-204, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 4

Gene PPP4R1, Length 531 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-204	ENST00000577393	KIF23	Q02241	960 aa	Predicted RBP	32.39	■■■□□ 2.78
PPP4R1-204	ENST00000577393	MAP3K11	Q16584	847 aa		32.39	■■■□□ 2.78
PPP4R1-204	ENST00000577393	SNRK	Q9NRH2	765 aa		32.39	■■■□□ 2.78
PPP4R1-204	ENST00000577393	CTCF	P49711	727 aa	Predicted RBP	32.38	■■■□□ 2.77
PPP4R1-204	ENST00000577393	FAM83A	Q86UY5	434 aa		32.38	■■■□□ 2.77
PPP4R1-204	ENST00000577393	AACS	Q86V21	672 aa		32.38	■■■□□ 2.77
PPP4R1-204	ENST00000577393	ZNF512B	Q96KM6	892 aa	Predicted RBP	32.38	■■■□□ 2.77
PPP4R1-204	ENST00000577393	IL1RAPL2	Q9NP60	686 aa		32.38	■■■□□ 2.77
PPP4R1-204	ENST00000577393	GAK	O14976	1311 aa		32.37	■■■□□ 2.77
PPP4R1-204	ENST00000577393	APBB1	O00213	710 aa		32.37	■■■□□ 2.77
PPP4R1-204	ENST00000577393	MECOM	Q03112	1051 aa		32.37	■■■□□ 2.77
PPP4R1-204	ENST00000577393	SLF2	Q8IX21	1173 aa		32.37	■■■□□ 2.77
PPP4R1-204	ENST00000577393	USP40	Q9NVE5	1235 aa		32.37	■■■□□ 2.77
PPP4R1-204	ENST00000577393	MYH2	Q9UKX2	1941 aa		32.37	■■■□□ 2.77
PPP4R1-204	ENST00000577393	USP2	O75604	605 aa	Predicted RBP	32.36	■■■□□ 2.77
PPP4R1-204	ENST00000577393	KIF1BP	Q96EK5	621 aa		32.36	■■■□□ 2.77
PPP4R1-204	ENST00000577393	FAM163A	Q96GL9	167 aa	Predicted RBP	32.36	■■■□□ 2.77
PPP4R1-204	ENST00000577393	ZNF384	Q8TF68	577 aa		32.35	■■■□□ 2.77
PPP4R1-204	ENST00000577393	RAB11FIP3	O75154	756 aa		32.34	■■■□□ 2.77
PPP4R1-204	ENST00000577393	IREB2	P48200	963 aa	Known RBP	32.34	■■■□□ 2.77
PPP4R1-204	ENST00000577393	COL13A1	Q5TAT6	717 aa	Predicted RBP	32.34	■■■□□ 2.77
PPP4R1-204	ENST00000577393	RAI14	Q9P0K7	980 aa		32.34	■■■□□ 2.77
PPP4R1-204	ENST00000577393	AKAP11	Q9UKA4	1901 aa		32.34	■■■□□ 2.77
PPP4R1-204	ENST00000577393	HSPA8	P11142	646 aa	Known RBP	32.33	■■■□□ 2.77
PPP4R1-204	ENST00000577393	NSUN4	Q96CB9	384 aa	Known RBP	32.33	■■■□□ 2.77
PPP4R1-204	ENST00000577393	LRP2BP	Q9P2M1	347 aa		32.33	■■■□□ 2.77
PPP4R1-204	ENST00000577393	MROH7-TTC4	A0A0A0MT08	1334 aa		32.32	■■■□□ 2.76
PPP4R1-204	ENST00000577393	LBX1	P52954	281 aa		32.32	■■■□□ 2.76
PPP4R1-204	ENST00000577393	NFIA	Q12857	509 aa		32.32	■■■□□ 2.76
PPP4R1-204	ENST00000577393	CLASRP	Q8N2M8	674 aa	Known RBP	32.32	■■■□□ 2.76
PPP4R1-204	ENST00000577393	CLMN	Q96JQ2	1002 aa		32.32	■■■□□ 2.76
PPP4R1-204	ENST00000577393	CSRNP1	Q96S65	589 aa		32.32	■■■□□ 2.76
PPP4R1-204	ENST00000577393	CYP2E1	P05181	493 aa	Predicted RBP	32.31	■■■□□ 2.76
PPP4R1-204	ENST00000577393	BTD	P43251	543 aa		32.31	■■■□□ 2.76
PPP4R1-204	ENST00000577393	ZAP70	P43403	619 aa		32.31	■■■□□ 2.76
PPP4R1-204	ENST00000577393	GSTO1	P78417	241 aa		32.31	■■■□□ 2.76
PPP4R1-204	ENST00000577393	TCP10	Q12799	353 aa		32.31	■■■□□ 2.76
PPP4R1-204	ENST00000577393	FAM151A	Q8WW52	585 aa		32.31	■■■□□ 2.76
PPP4R1-204	ENST00000577393	SLC10A4	Q96EP9	437 aa		32.31	■■■□□ 2.76
PPP4R1-204	ENST00000577393	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	32.31	■■■□□ 2.76
PPP4R1-204	ENST00000577393	UNCX	A6NJT0	531 aa		32.3	■■■□□ 2.76
PPP4R1-204	ENST00000577393	MKRN3	Q13064	507 aa	Known RBP	32.3	■■■□□ 2.76
PPP4R1-204	ENST00000577393	FAM198A	Q9UFP1	575 aa		32.3	■■■□□ 2.76
PPP4R1-204	ENST00000577393	TSKS	Q9UJT2	592 aa		32.3	■■■□□ 2.76
PPP4R1-204	ENST00000577393	GPR75-ASB3	A0A0A6YYF3	556 aa		32.29	■■■□□ 2.76
PPP4R1-204	ENST00000577393	CA12	O43570	354 aa		32.29	■■■□□ 2.76
PPP4R1-204	ENST00000577393	LDHC	P07864	332 aa		32.29	■■■□□ 2.76
PPP4R1-204	ENST00000577393	PRDM10	Q9NQV6	1147 aa		32.29	■■■□□ 2.76
PPP4R1-204	ENST00000577393	RPAP1	Q9BWH6	1393 aa	Predicted RBP	32.29	■■■□□ 2.76
PPP4R1-204	ENST00000577393	REM2	Q8IYK8	340 aa	Predicted RBP	32.28	■■■□□ 2.76
PPP4R1-204	ENST00000577393	ANKRD13A	Q8IZ07	590 aa		32.28	■■■□□ 2.76
PPP4R1-204	ENST00000577393	BCL11A	Q9H165	835 aa		32.28	■■■□□ 2.76
PPP4R1-204	ENST00000577393	SPRYD7	Q5W111	196 aa		32.27	■■■□□ 2.76
PPP4R1-204	ENST00000577393	HOOK2	Q96ED9	719 aa		32.27	■■■□□ 2.76
PPP4R1-204	ENST00000577393	IDI2	Q9BXS1	227 aa		32.27	■■■□□ 2.76
PPP4R1-204	ENST00000577393	IFIT2	P09913	472 aa	Known RBP	32.26	■■■□□ 2.75
PPP4R1-204	ENST00000577393	IFFO2	Q5TF58	517 aa		32.26	■■■□□ 2.75
PPP4R1-204	ENST00000577393	ZFPM1	Q8IX07	1006 aa		32.26	■■■□□ 2.75
PPP4R1-204	ENST00000577393	PIH1D3	Q9NQM4	214 aa	Known RBP	32.26	■■■□□ 2.75
PPP4R1-204	ENST00000577393	RGS3	P49796	1198 aa		32.25	■■■□□ 2.75
PPP4R1-204	ENST00000577393	NDUFB9	Q9Y6M9	179 aa		32.25	■■■□□ 2.75
PPP4R1-204	ENST00000577393	WDHD1	O75717	1129 aa	Predicted RBP	32.24	■■■□□ 2.75
PPP4R1-204	ENST00000577393	RHBDL3	P58872	404 aa		32.24	■■■□□ 2.75
PPP4R1-204	ENST00000577393	MAP3K9	P80192	1104 aa		32.24	■■■□□ 2.75
PPP4R1-204	ENST00000577393	NAA16	Q6N069	864 aa	Predicted RBP	32.24	■■■□□ 2.75
PPP4R1-204	ENST00000577393	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	32.24	■■■□□ 2.75
PPP4R1-204	ENST00000577393	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	32.24	■■■□□ 2.75
PPP4R1-204	ENST00000577393	WNK4	Q96J92	1243 aa		32.24	■■■□□ 2.75
PPP4R1-204	ENST00000577393	CRBN	Q96SW2	442 aa		32.24	■■■□□ 2.75
PPP4R1-204	ENST00000577393	RFX7	Q2KHR2	1363 aa		32.23	■■■□□ 2.75
PPP4R1-204	ENST00000577393	ENTPD3	O75355	529 aa		32.23	■■■□□ 2.75
PPP4R1-204	ENST00000577393	RNF186	Q9NXI6	227 aa		32.23	■■■□□ 2.75
PPP4R1-204	ENST00000577393	PCDHB15	Q9Y5E8	787 aa		32.23	■■■□□ 2.75
PPP4R1-204	ENST00000577393	DCAF15	Q66K64	600 aa		32.22	■■■□□ 2.75
PPP4R1-204	ENST00000577393	MIGA2	Q7L4E1	593 aa		32.22	■■■□□ 2.75
PPP4R1-204	ENST00000577393	LRRCC1	Q9C099	1032 aa		32.22	■■■□□ 2.75
PPP4R1-204	ENST00000577393	ELP3	Q9H9T3	547 aa		32.22	■■■□□ 2.75
PPP4R1-204	ENST00000577393	DDX4	Q9NQI0	724 aa	Known RBP	32.22	■■■□□ 2.75
PPP4R1-204	ENST00000577393	OTOF	Q9HC10	1997 aa		32.21	■■■□□ 2.75
PPP4R1-204	ENST00000577393	IGSF3	O75054	1194 aa		32.21	■■■□□ 2.75
PPP4R1-204	ENST00000577393	TRPA1	O75762	1119 aa		32.21	■■■□□ 2.75
PPP4R1-204	ENST00000577393	DCTPP1	Q9H773	170 aa		32.21	■■■□□ 2.75
PPP4R1-204	ENST00000577393	SAGE1	Q9NXZ1	904 aa		32.21	■■■□□ 2.75
PPP4R1-204	ENST00000577393	AK9	Q5TCS8	1911 aa		32.21	■■■□□ 2.75
PPP4R1-204	ENST00000577393	MYO5A	Q9Y4I1	1855 aa	Known RBP	32.2	■■■□□ 2.75
PPP4R1-204	ENST00000577393	ZBTB48	P10074	688 aa	Predicted RBP	32.2	■■■□□ 2.75
PPP4R1-204	ENST00000577393	TM4SF4	P48230	202 aa		32.2	■■■□□ 2.75
PPP4R1-204	ENST00000577393	PICALM	Q13492	652 aa		32.2	■■■□□ 2.75
PPP4R1-204	ENST00000577393	VGLL4	Q14135	290 aa		32.2	■■■□□ 2.75
PPP4R1-204	ENST00000577393	ANTXR1	Q9H6X2	564 aa		32.2	■■■□□ 2.75
PPP4R1-204	ENST00000577393	SMARCA5	O60264	1052 aa	Predicted RBP	32.19	■■■□□ 2.74
PPP4R1-204	ENST00000577393	MAP4K4	O95819	1239 aa	Predicted RBP	32.19	■■■□□ 2.74
PPP4R1-204	ENST00000577393	GJA5	P36382	358 aa		32.19	■■■□□ 2.74
PPP4R1-204	ENST00000577393	WRNIP1	Q96S55	665 aa		32.19	■■■□□ 2.74
PPP4R1-204	ENST00000577393	ZNF341	Q9BYN7	854 aa		32.19	■■■□□ 2.74
PPP4R1-204	ENST00000577393	CSAD	Q9Y600	493 aa		32.19	■■■□□ 2.74
PPP4R1-204	ENST00000577393	IDH1	O75874	414 aa	Known RBP	32.18	■■■□□ 2.74
PPP4R1-204	ENST00000577393	SREBF2	Q12772	1141 aa		32.18	■■■□□ 2.74
PPP4R1-204	ENST00000577393	SH3BP5L	Q7L8J4	393 aa		32.18	■■■□□ 2.74
PPP4R1-204	ENST00000577393	ADGRA1	Q86SQ6	560 aa		32.18	■■■□□ 2.74

Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms