RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 LINC00301Q8NCQ3 95 aa12.98□□□□□ -0.33
CLN3-238ENST00000569430 FBXO18Q8NFZ0 1043 aa12.98□□□□□ -0.33
CLN3-238ENST00000569430 PLEKHA4Q9H4M7 779 aa12.98□□□□□ -0.33
CLN3-238ENST00000569430 HELLSQ9NRZ9 838 aa12.98□□□□□ -0.33
CLN3-238ENST00000569430 ARHGEF10O15013 1369 aa12.98□□□□□ -0.33
CLN3-238ENST00000569430 ADCY9O60503 1353 aa12.98□□□□□ -0.33
CLN3-238ENST00000569430 RBM6P78332 1123 aaKnown RBP12.98□□□□□ -0.33
CLN3-238ENST00000569430 PIP4K2BP78356 416 aa12.98□□□□□ -0.33
CLN3-238ENST00000569430 KIF6Q6ZMV9 814 aa12.98□□□□□ -0.33
CLN3-238ENST00000569430 DHX40Q8IX18 779 aaKnown RBP12.98□□□□□ -0.33
CLN3-238ENST00000569430 RTEL1Q9NZ71 1219 aa12.98□□□□□ -0.33
CLN3-238ENST00000569430 PLEKHG3A1L390 1219 aa12.98□□□□□ -0.33
CLN3-238ENST00000569430 RANBP6O60518 1105 aaKnown RBP12.98□□□□□ -0.33
CLN3-238ENST00000569430 HOXB7P09629 217 aa12.98□□□□□ -0.33
CLN3-238ENST00000569430 RAD51AP2Q09MP3 1159 aa12.98□□□□□ -0.33
CLN3-238ENST00000569430 GPIHBP1Q8IV16 184 aa12.98□□□□□ -0.33
CLN3-238ENST00000569430 BABAM1Q9NWV8 329 aa12.98□□□□□ -0.33
CLN3-238ENST00000569430 PREX1Q8TCU6 1659 aa12.98□□□□□ -0.33
CLN3-238ENST00000569430 KANK3Q6NY19 840 aa12.97□□□□□ -0.33
CLN3-238ENST00000569430 AIFM3Q96NN9 605 aa12.97□□□□□ -0.33
CLN3-238ENST00000569430 SLF1Q9BQI6 1058 aa12.97□□□□□ -0.33
CLN3-238ENST00000569430 KCNJ14Q9UNX9 436 aa12.97□□□□□ -0.33
CLN3-238ENST00000569430 CCDC196A0A1B0GTZ2 297 aa12.97□□□□□ -0.33
CLN3-238ENST00000569430 CMA1P23946 247 aa12.97□□□□□ -0.33
CLN3-238ENST00000569430 IQCEQ6IPM2 695 aa12.97□□□□□ -0.33
CLN3-238ENST00000569430 CABP5Q9NP86 173 aa12.97□□□□□ -0.33
CLN3-238ENST00000569430 GOLGA6L10A6NI86 522 aa12.97□□□□□ -0.33
CLN3-238ENST00000569430 NEURL1BA8MQ27 555 aa12.97□□□□□ -0.33
CLN3-238ENST00000569430 TMEM232C9JQI7 657 aa12.97□□□□□ -0.33
CLN3-238ENST00000569430 EBAG9O00559 213 aa12.97□□□□□ -0.33
CLN3-238ENST00000569430 ZEB2O60315 1214 aa12.97□□□□□ -0.33
CLN3-238ENST00000569430 COBLO75128 1261 aa12.97□□□□□ -0.33
CLN3-238ENST00000569430 ST5P78524 1137 aa12.97□□□□□ -0.33
CLN3-238ENST00000569430 WWC2Q6AWC2 1192 aa12.97□□□□□ -0.33
CLN3-238ENST00000569430 CLTCQ00610 1675 aaKnown RBP12.97□□□□□ -0.33
CLN3-238ENST00000569430 CLSTN1O94985 981 aa12.96□□□□□ -0.33
CLN3-238ENST00000569430 TRIM21P19474 475 aaKnown RBP12.96□□□□□ -0.33
CLN3-238ENST00000569430 ZNF274Q96GC6 653 aaPredicted RBP12.96□□□□□ -0.33
CLN3-238ENST00000569430 METTL22Q9BUU2 404 aaPredicted RBP12.96□□□□□ -0.33
CLN3-238ENST00000569430 SERTAD1Q9UHV2 236 aa12.96□□□□□ -0.33
CLN3-238ENST00000569430 ADAM21Q9UKJ8 722 aa12.96□□□□□ -0.33
CLN3-238ENST00000569430 VIRMAQ69YN4 1812 aaKnown RBP12.96□□□□□ -0.33
CLN3-238ENST00000569430 RAD21O60216 631 aa12.96□□□□□ -0.33
CLN3-238ENST00000569430 MCM3P25205 808 aa12.96□□□□□ -0.33
CLN3-238ENST00000569430 RTN1Q16799 776 aa12.96□□□□□ -0.33
CLN3-238ENST00000569430 MFSD6Q6ZSS7 791 aa12.96□□□□□ -0.33
CLN3-238ENST00000569430 RRP15Q9Y3B9 282 aaKnown RBP12.96□□□□□ -0.33
CLN3-238ENST00000569430 IGSF1Q8N6C5 1336 aa12.96□□□□□ -0.33
CLN3-238ENST00000569430 POSTNQ15063 836 aa12.96□□□□□ -0.34
CLN3-238ENST00000569430 DIS3L2Q8IYB7 885 aaKnown RBP12.96□□□□□ -0.34
CLN3-238ENST00000569430 IP6K1Q92551 441 aa12.96□□□□□ -0.34
CLN3-238ENST00000569430 NAPGQ99747 312 aaPredicted RBP12.96□□□□□ -0.34
CLN3-238ENST00000569430 FAN1Q9Y2M0 1017 aa12.96□□□□□ -0.34
CLN3-238ENST00000569430 SALL3Q9BXA9 1300 aa12.96□□□□□ -0.34
CLN3-238ENST00000569430 CARMIL3Q8ND23 1372 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 A0A1W2PQ27 194 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 A0A1W2PQ64 194 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 A0A1W2PQD8 194 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 ZFYP08048 801 aaPredicted RBP12.95□□□□□ -0.34
CLN3-238ENST00000569430 ZNF790Q6PG37 636 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 CMTR1Q8N1G2 835 aaKnown RBP12.95□□□□□ -0.34
CLN3-238ENST00000569430 RABGGTAQ92696 567 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 BCCIPQ9P287 314 aaKnown RBP eCLIP12.95□□□□□ -0.34
CLN3-238ENST00000569430 ATP7BP35670 1465 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 TMEM2Q9UHN6 1383 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 MYO1CO00159 1063 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 ATP2C2O75185 946 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 PAFAH1B1P43034 410 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 UBXN1Q04323 297 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 CCDC122Q5T0U0 273 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 HELBQ8NG08 1087 aaPredicted RBP12.95□□□□□ -0.34
CLN3-238ENST00000569430 CTAGE1Q96RT6 745 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 STRN4Q9NRL3 753 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 ANGEL1Q9UNK9 670 aaKnown RBP12.95□□□□□ -0.34
CLN3-238ENST00000569430 ADGRB2O60241 1585 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 hCG_1642624A0A1W2PR95 340 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 TRIM75PA6NK02 468 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 GPAA1O43292 621 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 MTIF2P46199 727 aaKnown RBP12.95□□□□□ -0.34
CLN3-238ENST00000569430 WTAPQ15007 396 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 CHRNA2Q15822 529 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 GRAMD1CQ8IYS0 662 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 AFAP1L1Q8TED9 768 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 DDX17Q92841 729 aaKnown RBP12.95□□□□□ -0.34
CLN3-238ENST00000569430 IQSEC3Q9UPP2 1182 aaPredicted RBP12.95□□□□□ -0.34
CLN3-238ENST00000569430 KAT6BQ8WYB5 2073 aa12.95□□□□□ -0.34
CLN3-238ENST00000569430 TRIM66O15016 1216 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 KRT9P35527 623 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 EPS15P42566 896 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 NYAP1Q6ZVC0 841 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 FMR1NBQ8N0W7 255 aaPredicted RBP12.94□□□□□ -0.34
CLN3-238ENST00000569430 ZNF496Q96IT1 587 aaPredicted RBP12.94□□□□□ -0.34
CLN3-238ENST00000569430 TRIM47Q96LD4 638 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 OSBPL5Q9H0X9 879 aaPredicted RBP12.94□□□□□ -0.34
CLN3-238ENST00000569430 PHLPP2Q6ZVD8 1323 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 FGAP02671 866 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 BRD3Q15059 726 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 TOM1L2Q6ZVM7 507 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 CNGA4Q8IV77 575 aa12.94□□□□□ -0.34
CLN3-238ENST00000569430 RGS22Q8NE09 1264 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms