RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 GNRH1P01148 92 aa22.08■■□□□ 1.13
CLK3-221ENST00000568139 KIF22Q14807 665 aa22.08■■□□□ 1.13
CLK3-221ENST00000568139 RFX5P48382 616 aaPredicted RBP22.07■■□□□ 1.12
CLK3-221ENST00000568139 PPATQ06203 517 aa22.07■■□□□ 1.12
CLK3-221ENST00000568139 SLC4A8Q2Y0W8 1093 aa22.07■■□□□ 1.12
CLK3-221ENST00000568139 ZNF341Q9BYN7 854 aa22.07■■□□□ 1.12
CLK3-221ENST00000568139 AK9Q5TCS8 1911 aa22.06■■□□□ 1.12
CLK3-221ENST00000568139 PRMT2P55345 433 aa22.06■■□□□ 1.12
CLK3-221ENST00000568139 C17orf99Q6UX52 265 aa22.06■■□□□ 1.12
CLK3-221ENST00000568139 MIGA2Q7L4E1 593 aa22.06■■□□□ 1.12
CLK3-221ENST00000568139 WDR66Q8TBY9 1149 aa22.06■■□□□ 1.12
CLK3-221ENST00000568139 FAM151AQ8WW52 585 aa22.06■■□□□ 1.12
CLK3-221ENST00000568139 ZNF112Q9UJU3 913 aa22.06■■□□□ 1.12
CLK3-221ENST00000568139 EYA2O00167 538 aa22.05■■□□□ 1.12
CLK3-221ENST00000568139 INPP5BP32019 993 aa22.05■■□□□ 1.12
CLK3-221ENST00000568139 SH3TC2Q8TF17 1288 aa22.05■■□□□ 1.12
CLK3-221ENST00000568139 LPIN2Q92539 896 aa22.05■■□□□ 1.12
CLK3-221ENST00000568139 SLC5A1P13866 664 aa22.04■■□□□ 1.12
CLK3-221ENST00000568139 ANKRD23Q86SG2 305 aa22.04■■□□□ 1.12
CLK3-221ENST00000568139 SSH1Q8WYL5 1049 aa22.04■■□□□ 1.12
CLK3-221ENST00000568139 CDC42EP5Q6NZY7 148 aa22.03■■□□□ 1.12
CLK3-221ENST00000568139 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.03■■□□□ 1.12
CLK3-221ENST00000568139 KCNH4Q9UQ05 1017 aa22.03■■□□□ 1.12
CLK3-221ENST00000568139 DAGLAQ9Y4D2 1042 aa22.03■■□□□ 1.12
CLK3-221ENST00000568139 MYCP01106 439 aaPredicted RBP22.02■■□□□ 1.12
CLK3-221ENST00000568139 CTGFP29279 349 aa22.02■■□□□ 1.12
CLK3-221ENST00000568139 ATG9AQ7Z3C6 839 aa22.02■■□□□ 1.12
CLK3-221ENST00000568139 FXR1P51114 621 aaKnown RBP eCLIP22.01■■□□□ 1.11
CLK3-221ENST00000568139 TCP10Q12799 353 aa22.01■■□□□ 1.11
CLK3-221ENST00000568139 NOL9Q5SY16 702 aaKnown RBP22.01■■□□□ 1.11
CLK3-221ENST00000568139 CPA4Q9UI42 421 aa22.01■■□□□ 1.11
CLK3-221ENST00000568139 ADGRA2Q96PE1 1338 aa22.01■■□□□ 1.11
CLK3-221ENST00000568139 PDHXO00330 501 aa22■■□□□ 1.11
CLK3-221ENST00000568139 NFIAQ12857 509 aa22■■□□□ 1.11
CLK3-221ENST00000568139 MOGSQ13724 837 aa22■■□□□ 1.11
CLK3-221ENST00000568139 DIXDC1Q155Q3 683 aa22■■□□□ 1.11
CLK3-221ENST00000568139 SRRDQ9UH36 339 aa22■■□□□ 1.11
CLK3-221ENST00000568139 FBXO3Q9UK99 471 aa22■■□□□ 1.11
CLK3-221ENST00000568139 ZNF316A6NFI3 1004 aaPredicted RBP21.99■■□□□ 1.11
CLK3-221ENST00000568139 E9PSI1 815 aa21.99■■□□□ 1.11
CLK3-221ENST00000568139 PRDX5P30044 214 aa21.99■■□□□ 1.11
CLK3-221ENST00000568139 ZEB1P37275 1124 aaPredicted RBP21.99■■□□□ 1.11
CLK3-221ENST00000568139 PSMC4P43686 418 aa21.99■■□□□ 1.11
CLK3-221ENST00000568139 TRIM47Q96LD4 638 aa21.99■■□□□ 1.11
CLK3-221ENST00000568139 FAM198AQ9UFP1 575 aa21.99■■□□□ 1.11
CLK3-221ENST00000568139 COLQQ9Y215 455 aaPredicted RBP21.99■■□□□ 1.11
CLK3-221ENST00000568139 HOXD10P28358 340 aa21.98■■□□□ 1.11
CLK3-221ENST00000568139 SALL1Q9NSC2 1324 aa21.98■■□□□ 1.11
CLK3-221ENST00000568139 CEP290O15078 2479 aa21.97■■□□□ 1.11
CLK3-221ENST00000568139 ZBTB22O15209 634 aa21.97■■□□□ 1.11
CLK3-221ENST00000568139 CIAO1O76071 339 aa21.97■■□□□ 1.11
CLK3-221ENST00000568139 LDHBP07195 334 aaKnown RBP21.97■■□□□ 1.11
CLK3-221ENST00000568139 OSBPP22059 807 aa21.97■■□□□ 1.11
CLK3-221ENST00000568139 MTFR1Q15390 333 aa21.97■■□□□ 1.11
CLK3-221ENST00000568139 ALDH1L2Q3SY69 923 aa21.97■■□□□ 1.11
CLK3-221ENST00000568139 USP40Q9NVE5 1235 aa21.97■■□□□ 1.11
CLK3-221ENST00000568139 GNL3LQ9NVN8 582 aaKnown RBP21.97■■□□□ 1.11
CLK3-221ENST00000568139 MYH2Q9UKX2 1941 aa21.96■■□□□ 1.11
CLK3-221ENST00000568139 CXCL11O14625 94 aa21.96■■□□□ 1.11
CLK3-221ENST00000568139 ECM2O94769 699 aaPredicted RBP21.96■■□□□ 1.11
CLK3-221ENST00000568139 SLFN5Q08AF3 891 aa21.96■■□□□ 1.11
CLK3-221ENST00000568139 ATP2B3Q16720 1220 aa21.96■■□□□ 1.11
CLK3-221ENST00000568139 SHISA4Q96DD7 197 aa21.96■■□□□ 1.11
CLK3-221ENST00000568139 CEP126Q9P2H0 1117 aa21.96■■□□□ 1.11
CLK3-221ENST00000568139 MGAMO43451 1857 aa21.96■■□□□ 1.11
CLK3-221ENST00000568139 H0YGN5 161 aa21.95■■□□□ 1.1
CLK3-221ENST00000568139 SEMA3EO15041 775 aa21.95■■□□□ 1.1
CLK3-221ENST00000568139 FMNL1O95466 1100 aaPredicted RBP21.95■■□□□ 1.1
CLK3-221ENST00000568139 GRK4P32298 578 aa21.95■■□□□ 1.1
CLK3-221ENST00000568139 GPAT2Q6NUI2 795 aa21.95■■□□□ 1.1
CLK3-221ENST00000568139 ZFPM1Q8IX07 1006 aa21.95■■□□□ 1.1
CLK3-221ENST00000568139 SIL1Q9H173 461 aa21.95■■□□□ 1.1
CLK3-221ENST00000568139 DENND2AQ9ULE3 1009 aa21.95■■□□□ 1.1
CLK3-221ENST00000568139 PHF20L1A8MW92 1017 aa21.94■■□□□ 1.1
CLK3-221ENST00000568139 BCRP11274 1271 aa21.94■■□□□ 1.1
CLK3-221ENST00000568139 RAET1EQ8TD07 263 aa21.94■■□□□ 1.1
CLK3-221ENST00000568139 PARK7Q99497 189 aaKnown RBP21.94■■□□□ 1.1
CLK3-221ENST00000568139 IDI2Q9BXS1 227 aa21.94■■□□□ 1.1
CLK3-221ENST00000568139 ATRNL1Q5VV63 1379 aa21.94■■□□□ 1.1
CLK3-221ENST00000568139 DOCK2Q92608 1830 aa21.94■■□□□ 1.1
CLK3-221ENST00000568139 UBTFL1P0CB47 393 aaPredicted RBP21.93■■□□□ 1.1
CLK3-221ENST00000568139 PHKA1P46020 1223 aa21.93■■□□□ 1.1
CLK3-221ENST00000568139 MYPNQ86TC9 1320 aa21.93■■□□□ 1.1
CLK3-221ENST00000568139 NKX2-3Q8TAU0 364 aa21.93■■□□□ 1.1
CLK3-221ENST00000568139 ENTPD3O75355 529 aa21.92■■□□□ 1.1
CLK3-221ENST00000568139 GJA8P48165 433 aa21.92■■□□□ 1.1
CLK3-221ENST00000568139 MAP3K10Q02779 954 aa21.92■■□□□ 1.1
CLK3-221ENST00000568139 SCYL3Q8IZE3 742 aa21.92■■□□□ 1.1
CLK3-221ENST00000568139 TRIOBPQ9H2D6 2365 aa21.91■■□□□ 1.1
CLK3-221ENST00000568139 GAKO14976 1311 aa21.91■■□□□ 1.1
CLK3-221ENST00000568139 PTPRFP10586 1907 aa21.91■■□□□ 1.1
CLK3-221ENST00000568139 GJB1P08034 283 aa21.91■■□□□ 1.1
CLK3-221ENST00000568139 CYP2C8P10632 490 aa21.91■■□□□ 1.1
CLK3-221ENST00000568139 IL15P40933 162 aaPredicted RBP21.91■■□□□ 1.1
CLK3-221ENST00000568139 RGS3P49796 1198 aa21.91■■□□□ 1.1
CLK3-221ENST00000568139 FASTKD5Q7L8L6 764 aaKnown RBP21.91■■□□□ 1.1
CLK3-221ENST00000568139 UBE2Q1Q7Z7E8 422 aa21.91■■□□□ 1.1
CLK3-221ENST00000568139 ZGPATQ8N5A5 531 aaKnown RBP21.91■■□□□ 1.1
CLK3-221ENST00000568139 SMC4Q9NTJ3 1288 aa21.91■■□□□ 1.1
CLK3-221ENST00000568139 RFX7Q2KHR2 1363 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms