RNA–Protein interactions for RNA: ENST00000558868.5

TPM1-215, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-215ENST00000558868 CCDC83Q8IWF9 413 aa16.28■□□□□ 0.2
TPM1-215ENST00000558868 TNPO1Q92973 898 aaKnown RBP16.28■□□□□ 0.2
TPM1-215ENST00000558868 GPR101Q96P66 508 aaPredicted RBP16.28■□□□□ 0.2
TPM1-215ENST00000558868 KRT23Q9C075 422 aa16.28■□□□□ 0.2
TPM1-215ENST00000558868 EPB41L4AQ9HCS5 686 aaPredicted RBP16.28■□□□□ 0.2
TPM1-215ENST00000558868 SUGT1Q9Y2Z0 365 aa16.28■□□□□ 0.2
TPM1-215ENST00000558868 C10orf71Q711Q0 1435 aa16.28■□□□□ 0.2
TPM1-215ENST00000558868 A0A0G2JLW4 131 aa16.27■□□□□ 0.2
TPM1-215ENST00000558868 MB21D2Q8IYB1 491 aaPredicted RBP16.27■□□□□ 0.2
TPM1-215ENST00000558868 SUPT20HQ8NEM7 779 aa16.27■□□□□ 0.2
TPM1-215ENST00000558868 BRF1Q92994 677 aa16.27■□□□□ 0.2
TPM1-215ENST00000558868 ZNF274Q96GC6 653 aaPredicted RBP16.27■□□□□ 0.2
TPM1-215ENST00000558868 TCEANC2Q96MN5 208 aa16.27■□□□□ 0.2
TPM1-215ENST00000558868 ATP8A2Q9NTI2 1148 aa16.27■□□□□ 0.2
TPM1-215ENST00000558868 WDR33Q9C0J8 1336 aaKnown RBP16.26■□□□□ 0.19
TPM1-215ENST00000558868 DDX11L8A8MPP1 907 aa16.26■□□□□ 0.19
TPM1-215ENST00000558868 PRC1O43663 620 aa16.26■□□□□ 0.19
TPM1-215ENST00000558868 PRKAB2O43741 272 aa16.26■□□□□ 0.19
TPM1-215ENST00000558868 PCP11498 1178 aaKnown RBP16.26■□□□□ 0.19
TPM1-215ENST00000558868 MCM4P33991 863 aa16.26■□□□□ 0.19
TPM1-215ENST00000558868 AKNAD1Q5T1N1 836 aa16.26■□□□□ 0.19
TPM1-215ENST00000558868 CLEC17AQ6ZS10 378 aa16.26■□□□□ 0.19
TPM1-215ENST00000558868 MFSD6Q6ZSS7 791 aa16.26■□□□□ 0.19
TPM1-215ENST00000558868 SLC51AQ86UW1 340 aa16.26■□□□□ 0.19
TPM1-215ENST00000558868 ZNF384Q8TF68 577 aa16.26■□□□□ 0.19
TPM1-215ENST00000558868 STAG1Q8WVM7 1258 aa16.26■□□□□ 0.19
TPM1-215ENST00000558868 LARP6Q9BRS8 491 aaKnown RBP16.26■□□□□ 0.19
TPM1-215ENST00000558868 ANAPC4Q9UJX5 808 aa16.26■□□□□ 0.19
TPM1-215ENST00000558868 GOLGA6L22H0YM25 854 aa16.25■□□□□ 0.19
TPM1-215ENST00000558868 RIMBP2O15034 1052 aa16.25■□□□□ 0.19
TPM1-215ENST00000558868 LARGE1O95461 756 aa16.25■□□□□ 0.19
TPM1-215ENST00000558868 PDCP20941 246 aa16.25■□□□□ 0.19
TPM1-215ENST00000558868 NT5C2P49902 561 aa16.25■□□□□ 0.19
TPM1-215ENST00000558868 PPP4CP60510 307 aa16.25■□□□□ 0.19
TPM1-215ENST00000558868 DYNLL1P63167 89 aaKnown RBP16.25■□□□□ 0.19
TPM1-215ENST00000558868 TBC1D10CQ8IV04 446 aa16.25■□□□□ 0.19
TPM1-215ENST00000558868 GTF3C6Q969F1 213 aa16.25■□□□□ 0.19
TPM1-215ENST00000558868 TMEM87BQ96K49 555 aa16.25■□□□□ 0.19
TPM1-215ENST00000558868 LLPHQ9BRT6 129 aaKnown RBP16.25■□□□□ 0.19
TPM1-215ENST00000558868 MTA3Q9BTC8 594 aa16.25■□□□□ 0.19
TPM1-215ENST00000558868 RTFDC1Q9BY42 306 aaPredicted RBP16.25■□□□□ 0.19
TPM1-215ENST00000558868 TIAM2Q8IVF5 1701 aa16.25■□□□□ 0.19
TPM1-215ENST00000558868 PFKFB2O60825 505 aa16.24■□□□□ 0.19
TPM1-215ENST00000558868 SLC3A2P08195 630 aaKnown RBP16.24■□□□□ 0.19
TPM1-215ENST00000558868 PLCG2P16885 1265 aa16.24■□□□□ 0.19
TPM1-215ENST00000558868 CHRNA5P30532 468 aa16.24■□□□□ 0.19
TPM1-215ENST00000558868 EVCP57679 992 aa16.24■□□□□ 0.19
TPM1-215ENST00000558868 PPARAQ07869 468 aa16.24■□□□□ 0.19
TPM1-215ENST00000558868 MFSD14BQ5SR56 506 aa16.24■□□□□ 0.19
TPM1-215ENST00000558868 PODNQ7Z5L7 613 aa16.24■□□□□ 0.19
TPM1-215ENST00000558868 NBPF3Q9H094 633 aa16.24■□□□□ 0.19
TPM1-215ENST00000558868 AATFQ9NY61 560 aaKnown RBP eCLIP16.24■□□□□ 0.19
TPM1-215ENST00000558868 JAG2Q9Y219 1238 aa16.24■□□□□ 0.19
TPM1-215ENST00000558868 MROH7-TTC4A0A0A0MT08 1334 aa16.23■□□□□ 0.19
TPM1-215ENST00000558868 BRD1O95696 1058 aa16.23■□□□□ 0.19
TPM1-215ENST00000558868 POLD1P28340 1107 aa16.23■□□□□ 0.19
TPM1-215ENST00000558868 GJB2P29033 226 aa16.23■□□□□ 0.19
TPM1-215ENST00000558868 COL9A3Q14050 684 aaPredicted RBP16.23■□□□□ 0.19
TPM1-215ENST00000558868 TTLL6Q8N841 843 aa16.23■□□□□ 0.19
TPM1-215ENST00000558868 NECAB1Q8N987 351 aa16.23■□□□□ 0.19
TPM1-215ENST00000558868 SDR42E1Q8WUS8 393 aa16.23■□□□□ 0.19
TPM1-215ENST00000558868 FAM163AQ96GL9 167 aaPredicted RBP16.23■□□□□ 0.19
TPM1-215ENST00000558868 LRRC2Q9BYS8 371 aa16.23■□□□□ 0.19
TPM1-215ENST00000558868 ARPP21Q9UBL0 812 aaPredicted RBP16.23■□□□□ 0.19
TPM1-215ENST00000558868 KIF3AQ9Y496 699 aa16.23■□□□□ 0.19
TPM1-215ENST00000558868 DHX16O60231 1041 aaKnown RBP16.22■□□□□ 0.19
TPM1-215ENST00000558868 GTF2IP78347 998 aa16.22■□□□□ 0.19
TPM1-215ENST00000558868 CTDSPL2Q05D32 466 aa16.22■□□□□ 0.19
TPM1-215ENST00000558868 APOBRQ0VD83 1088 aa16.22■□□□□ 0.19
TPM1-215ENST00000558868 STK3Q13188 491 aa16.22■□□□□ 0.19
TPM1-215ENST00000558868 SART3Q15020 963 aaKnown RBP16.22■□□□□ 0.19
TPM1-215ENST00000558868 SBK1Q52WX2 424 aa16.22■□□□□ 0.19
TPM1-215ENST00000558868 AMOTL1Q8IY63 956 aa16.22■□□□□ 0.19
TPM1-215ENST00000558868 C7orf43Q8WVR3 580 aa16.22■□□□□ 0.19
TPM1-215ENST00000558868 ANGEL1Q9UNK9 670 aaKnown RBP16.22■□□□□ 0.19
TPM1-215ENST00000558868 SLX4Q8IY92 1834 aa16.22■□□□□ 0.19
TPM1-215ENST00000558868 DLEC1Q9Y238 1755 aa16.21■□□□□ 0.19
TPM1-215ENST00000558868 MINDY4BA8MYZ0 360 aa16.21■□□□□ 0.19
TPM1-215ENST00000558868 B4E1Z4 1266 aa16.21■□□□□ 0.19
TPM1-215ENST00000558868 ANTXR2P58335 489 aa16.21■□□□□ 0.19
TPM1-215ENST00000558868 FKBP1AP62942 108 aaKnown RBP16.21■□□□□ 0.19
TPM1-215ENST00000558868 HMGN5P82970 282 aaKnown RBP16.21■□□□□ 0.19
TPM1-215ENST00000558868 CHST3Q7LGC8 479 aa16.21■□□□□ 0.19
TPM1-215ENST00000558868 RTKN2Q8IZC4 609 aa16.21■□□□□ 0.19
TPM1-215ENST00000558868 ESR2Q92731 530 aa16.21■□□□□ 0.19
TPM1-215ENST00000558868 PDGFDQ9GZP0 370 aaPredicted RBP16.21■□□□□ 0.19
TPM1-215ENST00000558868 MTFR1LQ9H019 292 aa16.21■□□□□ 0.19
TPM1-215ENST00000558868 NEDD4P46934 1319 aa16.2■□□□□ 0.18
TPM1-215ENST00000558868 GPR75-ASB3A0A0A6YYF3 556 aa16.2■□□□□ 0.18
TPM1-215ENST00000558868 ERICH2A1L162 156 aa16.2■□□□□ 0.18
TPM1-215ENST00000558868 SH2B2O14492 632 aaPredicted RBP16.2■□□□□ 0.18
TPM1-215ENST00000558868 STX6O43752 255 aa16.2■□□□□ 0.18
TPM1-215ENST00000558868 BAG4O95429 457 aaKnown RBP16.2■□□□□ 0.18
TPM1-215ENST00000558868 PDIA3P30101 505 aaKnown RBP16.2■□□□□ 0.18
TPM1-215ENST00000558868 USP5P45974 858 aa16.2■□□□□ 0.18
TPM1-215ENST00000558868 TGFB2P61812 414 aa16.2■□□□□ 0.18
TPM1-215ENST00000558868 ST3GAL1Q11201 340 aa16.2■□□□□ 0.18
TPM1-215ENST00000558868 CCDC93Q567U6 631 aa16.2■□□□□ 0.18
TPM1-215ENST00000558868 SOGA3Q5TF21 947 aa16.2■□□□□ 0.18
TPM1-215ENST00000558868 OLFM4Q6UX06 510 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms