RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 CCDC158Q5M9N0 1113 aa12.98□□□□□ -0.33
LDLR-208ENST00000558518 CDC5LQ99459 802 aaKnown RBP12.98□□□□□ -0.33
LDLR-208ENST00000558518 PRR29P0C7W0 189 aa12.98□□□□□ -0.33
LDLR-208ENST00000558518 DNAJC21Q5F1R6 531 aaKnown RBP12.98□□□□□ -0.33
LDLR-208ENST00000558518 USPL1Q5W0Q7 1092 aa12.98□□□□□ -0.33
LDLR-208ENST00000558518 JMYQ8N9B5 988 aa12.98□□□□□ -0.33
LDLR-208ENST00000558518 SERTAD1Q9UHV2 236 aa12.98□□□□□ -0.33
LDLR-208ENST00000558518 ARHGAP6O43182 974 aa12.98□□□□□ -0.33
LDLR-208ENST00000558518 MRPS25P82663 173 aaKnown RBP12.98□□□□□ -0.33
LDLR-208ENST00000558518 KIF23Q02241 960 aaPredicted RBP12.98□□□□□ -0.33
LDLR-208ENST00000558518 CCDC93Q567U6 631 aa12.98□□□□□ -0.33
LDLR-208ENST00000558518 SHC4Q6S5L8 630 aa12.98□□□□□ -0.33
LDLR-208ENST00000558518 NCOA7Q8NI08 942 aa12.98□□□□□ -0.33
LDLR-208ENST00000558518 CABLES1Q8TDN4 633 aa12.98□□□□□ -0.33
LDLR-208ENST00000558518 PUS7LQ9H0K6 701 aaKnown RBP12.98□□□□□ -0.33
LDLR-208ENST00000558518 MRPL44Q9H9J2 332 aaKnown RBP12.98□□□□□ -0.33
LDLR-208ENST00000558518 MTMR7Q9Y216 660 aa12.98□□□□□ -0.33
LDLR-208ENST00000558518 TEX33O43247 280 aa12.97□□□□□ -0.33
LDLR-208ENST00000558518 KIF5CO60282 957 aa12.97□□□□□ -0.33
LDLR-208ENST00000558518 IARSP41252 1262 aaKnown RBP12.97□□□□□ -0.33
LDLR-208ENST00000558518 ZAP70P43403 619 aa12.97□□□□□ -0.33
LDLR-208ENST00000558518 GOLGA8AA7E2F4 631 aa12.97□□□□□ -0.33
LDLR-208ENST00000558518 VSTM4Q8IW00 320 aa12.97□□□□□ -0.33
LDLR-208ENST00000558518 GPATCH11Q8N954 259 aa12.97□□□□□ -0.33
LDLR-208ENST00000558518 ORAI2Q96SN7 254 aa12.97□□□□□ -0.33
LDLR-208ENST00000558518 BTBD18B2RXH4 712 aa12.96□□□□□ -0.33
LDLR-208ENST00000558518 ENC1O14682 589 aa12.96□□□□□ -0.33
LDLR-208ENST00000558518 GCP02774 474 aa12.96□□□□□ -0.33
LDLR-208ENST00000558518 CMA1P23946 247 aa12.96□□□□□ -0.33
LDLR-208ENST00000558518 EXOSC10Q01780 885 aaKnown RBP12.96□□□□□ -0.33
LDLR-208ENST00000558518 FMR1Q06787 632 aaKnown RBP eCLIP12.96□□□□□ -0.336e-7■□□□□ 9.2
LDLR-208ENST00000558518 TTLL7Q6ZT98 887 aa12.96□□□□□ -0.33
LDLR-208ENST00000558518 ACRBPQ8NEB7 543 aa12.96□□□□□ -0.33
LDLR-208ENST00000558518 HOOK1Q9UJC3 728 aaKnown RBP12.96□□□□□ -0.33
LDLR-208ENST00000558518 AXIN2Q9Y2T1 843 aa12.96□□□□□ -0.33
LDLR-208ENST00000558518 TMEM2Q9UHN6 1383 aa12.96□□□□□ -0.33
LDLR-208ENST00000558518 HOXB7P09629 217 aa12.96□□□□□ -0.33
LDLR-208ENST00000558518 AXDND1Q5T1B0 1012 aaPredicted RBP12.96□□□□□ -0.33
LDLR-208ENST00000558518 HELBQ8NG08 1087 aaPredicted RBP12.96□□□□□ -0.33
LDLR-208ENST00000558518 TSPOAP1O95153 1857 aa12.96□□□□□ -0.34
LDLR-208ENST00000558518 YEATS4O95619 227 aa12.96□□□□□ -0.34
LDLR-208ENST00000558518 SCARF1Q14162 830 aa12.96□□□□□ -0.34
LDLR-208ENST00000558518 CCDC57Q2TAC2 916 aa12.96□□□□□ -0.34
LDLR-208ENST00000558518 TSGA10IPQ3SY00 556 aa12.96□□□□□ -0.34
LDLR-208ENST00000558518 FOXP4Q8IVH2 680 aaPredicted RBP12.96□□□□□ -0.34
LDLR-208ENST00000558518 GPR161Q8N6U8 529 aaKnown RBP12.96□□□□□ -0.34
LDLR-208ENST00000558518 DDX17Q92841 729 aaKnown RBP12.96□□□□□ -0.34
LDLR-208ENST00000558518 ZNF274Q96GC6 653 aaPredicted RBP12.96□□□□□ -0.34
LDLR-208ENST00000558518 COPRSQ9NQ92 184 aa12.96□□□□□ -0.34
LDLR-208ENST00000558518 GUCA1BQ9UMX6 200 aa12.96□□□□□ -0.34
LDLR-208ENST00000558518 PHLPP2Q6ZVD8 1323 aa12.96□□□□□ -0.34
LDLR-208ENST00000558518 A0A1W2PQ27 194 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 A0A1W2PQ64 194 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 A0A1W2PQD8 194 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 A1BGP04217 495 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 CCDC175P0C221 793 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 GPTP24298 496 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 CDC25AP30304 524 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 AMOTQ4VCS5 1084 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 TTC19Q6DKK2 380 aaPredicted RBP12.95□□□□□ -0.34
LDLR-208ENST00000558518 USP49Q70CQ1 688 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 METTL16Q86W50 562 aaKnown RBP12.95□□□□□ -0.34
LDLR-208ENST00000558518 RASSF8Q8NHQ8 419 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 BABAM1Q9NWV8 329 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 TFR2Q9UP52 801 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 RRP15Q9Y3B9 282 aaKnown RBP12.95□□□□□ -0.34
LDLR-208ENST00000558518 ZRANB2O95218 330 aaKnown RBP eCLIP12.95□□□□□ -0.34
LDLR-208ENST00000558518 TPM1P09493 284 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 PDIA6Q15084 440 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 SAFBQ15424 915 aaKnown RBP eCLIP12.95□□□□□ -0.34
LDLR-208ENST00000558518 SPECC1LQ69YQ0 1117 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 IGSF22Q8N9C0 903 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 DRC1Q96MC2 740 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 VPS16Q9H269 839 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 ABCB6Q9NP58 842 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 GPAA1O43292 621 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 DNA2P51530 1060 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 CABP4P57796 275 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 TMEM67Q5HYA8 995 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 ZMYM1Q5SVZ6 1142 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 SLC9C2Q5TAH2 1124 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 NUP88Q99567 741 aaPredicted RBP12.95□□□□□ -0.34
LDLR-208ENST00000558518 POLD4Q9HCU8 107 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 POLR3EQ9NVU0 708 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 ITSN1Q15811 1721 aa12.95□□□□□ -0.34
LDLR-208ENST00000558518 IFIT3O14879 490 aaKnown RBP12.94□□□□□ -0.34
LDLR-208ENST00000558518 MATR3P43243 847 aaKnown RBP eCLIP12.94□□□□□ -0.34
LDLR-208ENST00000558518 NR5A1Q13285 461 aa12.94□□□□□ -0.34
LDLR-208ENST00000558518 SLC39A14Q15043 492 aa12.94□□□□□ -0.34
LDLR-208ENST00000558518 NCAPH2Q6IBW4 605 aa12.94□□□□□ -0.34
LDLR-208ENST00000558518 MPHOSPH8Q99549 860 aa12.94□□□□□ -0.34
LDLR-208ENST00000558518 ABL1P00519 1130 aa12.94□□□□□ -0.34
LDLR-208ENST00000558518 CTDSPL2Q05D32 466 aa12.94□□□□□ -0.34
LDLR-208ENST00000558518 BRAPQ7Z569 592 aa12.94□□□□□ -0.34
LDLR-208ENST00000558518 RIN2Q8WYP3 895 aaPredicted RBP12.94□□□□□ -0.34
LDLR-208ENST00000558518 SLF1Q9BQI6 1058 aa12.94□□□□□ -0.34
LDLR-208ENST00000558518 HELLSQ9NRZ9 838 aa12.94□□□□□ -0.34
LDLR-208ENST00000558518 E2F4Q16254 413 aa12.94□□□□□ -0.34
LDLR-208ENST00000558518 SLC4A8Q2Y0W8 1093 aa12.94□□□□□ -0.34
LDLR-208ENST00000558518 GSPT2Q8IYD1 628 aaKnown RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms