RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 CDC37L1Q7L3B6 337 aa12.57□□□□□ -0.4
USP3-206ENST00000558157 CEP57L1Q8IYX8 460 aa12.57□□□□□ -0.4
USP3-206ENST00000558157 IL25Q9H293 177 aa12.57□□□□□ -0.4
USP3-206ENST00000558157 CFAP45Q9UL16 551 aa12.57□□□□□ -0.4
USP3-206ENST00000558157 MYH3P11055 1940 aa12.57□□□□□ -0.4
USP3-206ENST00000558157 COL24A1Q17RW2 1714 aa12.57□□□□□ -0.4
USP3-206ENST00000558157 SASH3O75995 380 aa12.57□□□□□ -0.4
USP3-206ENST00000558157 APPP05067 770 aa12.57□□□□□ -0.4
USP3-206ENST00000558157 LMAN1P49257 510 aa12.57□□□□□ -0.4
USP3-206ENST00000558157 USPL1Q5W0Q7 1092 aa12.57□□□□□ -0.4
USP3-206ENST00000558157 FCHSD1Q86WN1 690 aa12.57□□□□□ -0.4
USP3-206ENST00000558157 DHX40Q8IX18 779 aaKnown RBP12.57□□□□□ -0.4
USP3-206ENST00000558157 SYNE4Q8N205 404 aa12.57□□□□□ -0.4
USP3-206ENST00000558157 ARHGEF1Q92888 912 aaKnown RBP12.57□□□□□ -0.4
USP3-206ENST00000558157 ALDH8A1Q9H2A2 487 aaPredicted RBP12.57□□□□□ -0.4
USP3-206ENST00000558157 NARFQ9UHQ1 456 aa12.57□□□□□ -0.4
USP3-206ENST00000558157 PA2G4Q9UQ80 394 aaKnown RBP12.57□□□□□ -0.4
USP3-206ENST00000558157 LAMB2P55268 1798 aa12.57□□□□□ -0.4
USP3-206ENST00000558157 SURF6O75683 361 aaKnown RBP12.56□□□□□ -0.4
USP3-206ENST00000558157 GYS2P54840 703 aa12.56□□□□□ -0.4
USP3-206ENST00000558157 ME3Q16798 604 aa12.56□□□□□ -0.4
USP3-206ENST00000558157 HOMER1Q86YM7 354 aa12.56□□□□□ -0.4
USP3-206ENST00000558157 LRRN4CLQ8ND94 238 aa12.56□□□□□ -0.4
USP3-206ENST00000558157 MPHOSPH8Q99549 860 aa12.56□□□□□ -0.4
USP3-206ENST00000558157 TRMT112Q9UI30 125 aaKnown RBP12.56□□□□□ -0.4
USP3-206ENST00000558157 NIP7Q9Y221 180 aaKnown RBP eCLIP12.56□□□□□ -0.4
USP3-206ENST00000558157 DDX60Q8IY21 1712 aaKnown RBP12.56□□□□□ -0.4
USP3-206ENST00000558157 CDHR2Q9BYE9 1310 aa12.56□□□□□ -0.4
USP3-206ENST00000558157 CCDC151A5D8V7 595 aa12.56□□□□□ -0.4
USP3-206ENST00000558157 SMC2O95347 1197 aa12.56□□□□□ -0.4
USP3-206ENST00000558157 ST3GAL1Q11201 340 aa12.56□□□□□ -0.4
USP3-206ENST00000558157 SUSD4Q5VX71 490 aa12.56□□□□□ -0.4
USP3-206ENST00000558157 LMBR1LQ6UX01 489 aa12.56□□□□□ -0.4
USP3-206ENST00000558157 C11orf57Q6ZUT1 292 aaPredicted RBP12.56□□□□□ -0.4
USP3-206ENST00000558157 RPAINQ86UA6 219 aa12.56□□□□□ -0.4
USP3-206ENST00000558157 RABGGTAQ92696 567 aa12.56□□□□□ -0.4
USP3-206ENST00000558157 PGBD1Q96JS3 809 aa12.56□□□□□ -0.4
USP3-206ENST00000558157 CEP89Q96ST8 783 aa12.56□□□□□ -0.4
USP3-206ENST00000558157 BPIFA3Q9BQP9 254 aa12.56□□□□□ -0.4
USP3-206ENST00000558157 FUT8Q9BYC5 575 aa12.56□□□□□ -0.4
USP3-206ENST00000558157 KIF1CO43896 1103 aaKnown RBP12.55□□□□□ -0.4
USP3-206ENST00000558157 ZPR1O75312 459 aa12.55□□□□□ -0.4
USP3-206ENST00000558157 EVCP57679 992 aa12.55□□□□□ -0.4
USP3-206ENST00000558157 CORO7P57737 925 aa12.55□□□□□ -0.4
USP3-206ENST00000558157 BRD3Q15059 726 aa12.55□□□□□ -0.4
USP3-206ENST00000558157 CLEC4GQ6UXB4 293 aa12.55□□□□□ -0.4
USP3-206ENST00000558157 NBPF11Q86T75 865 aa12.55□□□□□ -0.4
USP3-206ENST00000558157 ZSCAN16Q9H4T2 348 aaPredicted RBP12.55□□□□□ -0.4
USP3-206ENST00000558157 USP42Q9H9J4 1324 aaKnown RBP12.55□□□□□ -0.4
USP3-206ENST00000558157 GOLGA6L9A6NEM1 432 aa12.54□□□□□ -0.4
USP3-206ENST00000558157 MAP2K7O14733 419 aa12.54□□□□□ -0.4
USP3-206ENST00000558157 CCDC172P0C7W6 258 aa12.54□□□□□ -0.4
USP3-206ENST00000558157 ZKSCAN1P17029 563 aaPredicted RBP12.54□□□□□ -0.4
USP3-206ENST00000558157 PSMA5P28066 241 aa12.54□□□□□ -0.4
USP3-206ENST00000558157 GSCP56915 257 aaPredicted RBP12.54□□□□□ -0.4
USP3-206ENST00000558157 TUBB4BP68371 445 aa12.54□□□□□ -0.4
USP3-206ENST00000558157 PARP10Q53GL7 1025 aa12.54□□□□□ -0.4
USP3-206ENST00000558157 TRAPPC3LQ5T215 181 aa12.54□□□□□ -0.4
USP3-206ENST00000558157 KLHDC4Q8TBB5 520 aa12.54□□□□□ -0.4
USP3-206ENST00000558157 ZBTB9Q96C00 473 aa12.54□□□□□ -0.4
USP3-206ENST00000558157 JAKMIP1Q96N16 626 aaKnown RBP12.54□□□□□ -0.4
USP3-206ENST00000558157 FAM107BQ9H098 131 aa12.54□□□□□ -0.4
USP3-206ENST00000558157 TMX1Q9H3N1 280 aa12.54□□□□□ -0.4
USP3-206ENST00000558157 ZCCHC17Q9NP64 241 aaKnown RBP12.54□□□□□ -0.4
USP3-206ENST00000558157 CEP83Q9Y592 693 aa12.54□□□□□ -0.4
USP3-206ENST00000558157 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.54□□□□□ -0.4
USP3-206ENST00000558157 EIF3CLB5ME19 914 aaKnown RBP12.54□□□□□ -0.4
USP3-206ENST00000558157 SEC31AO94979 1220 aaKnown RBP12.54□□□□□ -0.4
USP3-206ENST00000558157 NTSR2O95665 410 aa12.54□□□□□ -0.4
USP3-206ENST00000558157 RFX5P48382 616 aaPredicted RBP12.54□□□□□ -0.4
USP3-206ENST00000558157 ZNF827Q17R98 1081 aa12.54□□□□□ -0.4
USP3-206ENST00000558157 TBC1D9BQ66K14 1250 aa12.54□□□□□ -0.4
USP3-206ENST00000558157 PACS2Q86VP3 889 aa12.54□□□□□ -0.4
USP3-206ENST00000558157 EFCAB13Q8IY85 973 aa12.54□□□□□ -0.4
USP3-206ENST00000558157 PI4K2BQ8TCG2 481 aa12.54□□□□□ -0.4
USP3-206ENST00000558157 HNRNPLLQ8WVV9 542 aaKnown RBP12.54□□□□□ -0.4
USP3-206ENST00000558157 EIF3CQ99613 913 aaKnown RBP12.54□□□□□ -0.4
USP3-206ENST00000558157 PLA2G12BQ9BX93 195 aa12.54□□□□□ -0.4
USP3-206ENST00000558157 CASZ1Q86V15 1759 aa12.53□□□□□ -0.4
USP3-206ENST00000558157 IRS4O14654 1257 aaPredicted RBP12.53□□□□□ -0.4
USP3-206ENST00000558157 RGL2O15211 777 aa12.53□□□□□ -0.4
USP3-206ENST00000558157 ADRA2BP18089 450 aa12.53□□□□□ -0.4
USP3-206ENST00000558157 RFC4P35249 363 aa12.53□□□□□ -0.4
USP3-206ENST00000558157 OS9Q13438 667 aaPredicted RBP12.53□□□□□ -0.4
USP3-206ENST00000558157 ATL3Q6DD88 541 aa12.53□□□□□ -0.4
USP3-206ENST00000558157 TRIM65Q6PJ69 517 aa12.53□□□□□ -0.4
USP3-206ENST00000558157 BICDL1Q6ZP65 573 aa12.53□□□□□ -0.4
USP3-206ENST00000558157 RSRC2Q7L4I2 434 aaKnown RBP12.53□□□□□ -0.4
USP3-206ENST00000558157 UTP14AQ9BVJ6 771 aaKnown RBP12.53□□□□□ -0.4
USP3-206ENST00000558157 SIL1Q9H173 461 aa12.53□□□□□ -0.4
USP3-206ENST00000558157 PARP3Q9Y6F1 533 aa12.53□□□□□ -0.4
USP3-206ENST00000558157 ZSCAN12O43309 604 aa12.53□□□□□ -0.4
USP3-206ENST00000558157 EIF3JO75822 258 aaKnown RBP12.53□□□□□ -0.4
USP3-206ENST00000558157 ZRSR1Q15695 479 aaKnown RBP12.53□□□□□ -0.4
USP3-206ENST00000558157 MCTP2Q6DN12 878 aa12.53□□□□□ -0.4
USP3-206ENST00000558157 ARMCX5Q6P1M9 558 aa12.53□□□□□ -0.4
USP3-206ENST00000558157 FERMT3Q86UX7 667 aa12.53□□□□□ -0.4
USP3-206ENST00000558157 POTEB2H3BUK9 544 aa12.52□□□□□ -0.4
USP3-206ENST00000558157 PTPN12Q05209 780 aaKnown RBP12.52□□□□□ -0.4
USP3-206ENST00000558157 HSP90AB4PQ58FF6 505 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms