RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 PRC1O43663 620 aa19.83■□□□□ 0.76
LDLR-206ENST00000557958 MBD3O95983 291 aa19.83■□□□□ 0.76
LDLR-206ENST00000557958 NCLP19338 710 aaKnown RBP19.83■□□□□ 0.76
LDLR-206ENST00000557958 HMGN5P82970 282 aaKnown RBP19.83■□□□□ 0.76
LDLR-206ENST00000557958 L1TD1Q5T7N2 865 aaKnown RBP19.83■□□□□ 0.76
LDLR-206ENST00000557958 TTLL6Q8N841 843 aa19.83■□□□□ 0.76
LDLR-206ENST00000557958 ARMT1Q9H993 441 aa19.83■□□□□ 0.76
LDLR-206ENST00000557958 VPS37CA5D8V6 355 aaPredicted RBP19.82■□□□□ 0.76
LDLR-206ENST00000557958 G3V3G9 751 aa19.82■□□□□ 0.76
LDLR-206ENST00000557958 DCAF8Q5TAQ9 597 aa19.82■□□□□ 0.76
LDLR-206ENST00000557958 IFNL3Q8IZI9 196 aa19.82■□□□□ 0.76
LDLR-206ENST00000557958 ZC3H12CQ9C0D7 883 aaKnown RBP19.82■□□□□ 0.76
LDLR-206ENST00000557958 CNNM2Q9H8M5 875 aa19.82■□□□□ 0.76
LDLR-206ENST00000557958 SLC4A4Q9Y6R1 1079 aa19.82■□□□□ 0.76
LDLR-206ENST00000557958 MAGEB6P1A0A0J9YX57 407 aa19.82■□□□□ 0.76
LDLR-206ENST00000557958 DHX16O60231 1041 aaKnown RBP19.82■□□□□ 0.76
LDLR-206ENST00000557958 TDO2P48775 406 aa19.82■□□□□ 0.76
LDLR-206ENST00000557958 EVCP57679 992 aa19.82■□□□□ 0.76
LDLR-206ENST00000557958 APOBRQ0VD83 1088 aa19.82■□□□□ 0.76
LDLR-206ENST00000557958 MTMR6Q9Y217 621 aa19.82■□□□□ 0.76
LDLR-206ENST00000557958 COL1A1P02452 1464 aaPredicted RBP19.81■□□□□ 0.76
LDLR-206ENST00000557958 KCNA3P22001 575 aa19.81■□□□□ 0.76
LDLR-206ENST00000557958 SPTY2D1Q68D10 685 aaPredicted RBP19.81■□□□□ 0.76
LDLR-206ENST00000557958 NAA16Q6N069 864 aaPredicted RBP19.81■□□□□ 0.76
LDLR-206ENST00000557958 FAM184AQ8NB25 1140 aa19.81■□□□□ 0.76
LDLR-206ENST00000557958 NAP1L2Q9ULW6 460 aaPredicted RBP19.81■□□□□ 0.76
LDLR-206ENST00000557958 IRS2Q9Y4H2 1338 aa19.81■□□□□ 0.76
LDLR-206ENST00000557958 CACNA1SQ13698 1873 aa19.8■□□□□ 0.76
LDLR-206ENST00000557958 SCRN1Q12765 414 aa19.8■□□□□ 0.76
LDLR-206ENST00000557958 LCORLQ8N3X6 602 aa19.8■□□□□ 0.76
LDLR-206ENST00000557958 GOLGA6L3A6NEY3 463 aa19.79■□□□□ 0.76
LDLR-206ENST00000557958 GSG1L2A8MUP6 293 aa19.79■□□□□ 0.76
LDLR-206ENST00000557958 DOK7Q18PE1 504 aa19.79■□□□□ 0.76
LDLR-206ENST00000557958 FBXW7Q969H0 707 aa19.79■□□□□ 0.76
LDLR-206ENST00000557958 CD209Q9NNX6 404 aa19.79■□□□□ 0.76
LDLR-206ENST00000557958 PDIA3P30101 505 aaKnown RBP19.79■□□□□ 0.76
LDLR-206ENST00000557958 TGFB2P61812 414 aa19.79■□□□□ 0.76
LDLR-206ENST00000557958 C15orf52Q6ZUT6 534 aaKnown RBP19.79■□□□□ 0.76
LDLR-206ENST00000557958 TBC1D10CQ8IV04 446 aa19.79■□□□□ 0.76
LDLR-206ENST00000557958 MIGA1Q8NAN2 632 aa19.79■□□□□ 0.76
LDLR-206ENST00000557958 TMEM87BQ96K49 555 aa19.79■□□□□ 0.76
LDLR-206ENST00000557958 KRT23Q9C075 422 aa19.79■□□□□ 0.76
LDLR-206ENST00000557958 RNF41Q9H4P4 317 aaPredicted RBP19.79■□□□□ 0.76
LDLR-206ENST00000557958 EPB41L4AQ9HCS5 686 aaPredicted RBP19.79■□□□□ 0.76
LDLR-206ENST00000557958 PIM2Q9P1W9 311 aa19.79■□□□□ 0.76
LDLR-206ENST00000557958 SLX4Q8IY92 1834 aa19.79■□□□□ 0.76
LDLR-206ENST00000557958 PTGER2P43116 358 aa19.78■□□□□ 0.76
LDLR-206ENST00000557958 CHST3Q7LGC8 479 aa19.78■□□□□ 0.76
LDLR-206ENST00000557958 TMEM87AQ8NBN3 555 aa19.78■□□□□ 0.76
LDLR-206ENST00000557958 SMARCC2Q8TAQ2 1214 aa19.78■□□□□ 0.76
LDLR-206ENST00000557958 TDRD7Q8NHU6 1098 aaKnown RBP19.77■□□□□ 0.76
LDLR-206ENST00000557958 WDR66Q8TBY9 1149 aa19.77■□□□□ 0.76
LDLR-206ENST00000557958 EYA3Q99504 573 aa19.77■□□□□ 0.76
LDLR-206ENST00000557958 SGIP1Q9BQI5 828 aa19.77■□□□□ 0.76
LDLR-206ENST00000557958 NBPF3Q9H094 633 aa19.77■□□□□ 0.76
LDLR-206ENST00000557958 ANGEL1Q9UNK9 670 aaKnown RBP19.77■□□□□ 0.76
LDLR-206ENST00000557958 AKNAD1Q5T1N1 836 aa19.77■□□□□ 0.76
LDLR-206ENST00000557958 MFSD6Q6ZSS7 791 aa19.77■□□□□ 0.76
LDLR-206ENST00000557958 C7orf43Q8WVR3 580 aa19.77■□□□□ 0.76
LDLR-206ENST00000557958 SPON1Q9HCB6 807 aa19.77■□□□□ 0.76
LDLR-206ENST00000557958 MYH13Q9UKX3 1938 aa19.77■□□□□ 0.76
LDLR-206ENST00000557958 TIAM2Q8IVF5 1701 aa19.76■□□□□ 0.75
LDLR-206ENST00000557958 SALL1Q9NSC2 1324 aa19.76■□□□□ 0.75
LDLR-206ENST00000557958 H3BQV1 296 aa19.76■□□□□ 0.75
LDLR-206ENST00000557958 IFFO2Q5TF58 517 aa19.76■□□□□ 0.75
LDLR-206ENST00000557958 GIMAP6Q6P9H5 292 aa19.76■□□□□ 0.75
LDLR-206ENST00000557958 NSUN7Q8NE18 718 aaKnown RBP19.76■□□□□ 0.75
LDLR-206ENST00000557958 SYAP1Q96A49 352 aaPredicted RBP19.76■□□□□ 0.75
LDLR-206ENST00000557958 KLF18A0A0U1RQI7 1052 aa19.75■□□□□ 0.75
LDLR-206ENST00000557958 PTPDC1A2A3K4 754 aa19.75■□□□□ 0.75
LDLR-206ENST00000557958 GOLGA8BA8MQT2 603 aa19.75■□□□□ 0.75
LDLR-206ENST00000557958 ANTXR2P58335 489 aa19.75■□□□□ 0.75
LDLR-206ENST00000557958 SART3Q15020 963 aaKnown RBP19.75■□□□□ 0.75
LDLR-206ENST00000557958 STAG1Q8WVM7 1258 aa19.75■□□□□ 0.75
LDLR-206ENST00000557958 NSUN4Q96CB9 384 aaKnown RBP19.75■□□□□ 0.75
LDLR-206ENST00000557958 JAK2O60674 1132 aa19.75■□□□□ 0.75
LDLR-206ENST00000557958 CCT2P78371 535 aaKnown RBP19.75■□□□□ 0.75
LDLR-206ENST00000557958 FOXD4L6Q3SYB3 417 aaPredicted RBP19.75■□□□□ 0.75
LDLR-206ENST00000557958 FOXD4L3Q6VB84 417 aaPredicted RBP19.75■□□□□ 0.75
LDLR-206ENST00000557958 RIOK1Q9BRS2 568 aaKnown RBP19.75■□□□□ 0.75
LDLR-206ENST00000557958 MTA3Q9BTC8 594 aa19.75■□□□□ 0.75
LDLR-206ENST00000557958 DBNDD1Q9H9R9 158 aa19.75■□□□□ 0.75
LDLR-206ENST00000557958 BRPF3Q9ULD4 1205 aa19.75■□□□□ 0.75
LDLR-206ENST00000557958 MAST2Q6P0Q8 1798 aa19.74■□□□□ 0.75
LDLR-206ENST00000557958 B4E1Z4 1266 aa19.74■□□□□ 0.75
LDLR-206ENST00000557958 PRKAB2O43741 272 aa19.74■□□□□ 0.75
LDLR-206ENST00000557958 MECOMQ03112 1051 aa19.74■□□□□ 0.75
LDLR-206ENST00000557958 DALRD3Q5D0E6 543 aaKnown RBP19.74■□□□□ 0.75
LDLR-206ENST00000557958 CAVIN1Q6NZI2 390 aaKnown RBP19.74■□□□□ 0.75
LDLR-206ENST00000557958 CDC37L1Q7L3B6 337 aa19.74■□□□□ 0.75
LDLR-206ENST00000557958 ADGRA1Q86SQ6 560 aa19.74■□□□□ 0.75
LDLR-206ENST00000557958 DZIP1Q86YF9 867 aaKnown RBP19.74■□□□□ 0.75
LDLR-206ENST00000557958 COA1Q9GZY4 146 aa19.74■□□□□ 0.75
LDLR-206ENST00000557958 CD2APQ9Y5K6 639 aa19.74■□□□□ 0.75
LDLR-206ENST00000557958 DUOX1Q9NRD9 1551 aa19.74■□□□□ 0.75
LDLR-206ENST00000557958 NEDD4P46934 1319 aa19.73■□□□□ 0.75
LDLR-206ENST00000557958 FSD2A1L4K1 749 aa19.73■□□□□ 0.75
LDLR-206ENST00000557958 CPLX1O14810 134 aa19.73■□□□□ 0.75
LDLR-206ENST00000557958 IL1R1P14778 569 aa19.73■□□□□ 0.75
LDLR-206ENST00000557958 PRDX5P30044 214 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms