RNA–Protein interactions for RNA: ENST00000555221.3

CKS1BP1-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 1, humanhuman

BASIC

Gene CKS1BP1, Length 240 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP1-201ENST00000555221 KRT82Q9NSB4 513 aa8.44□□□□□ -1.06
CKS1BP1-201ENST00000555221 PPP1R1BQ9UD71 204 aaPredicted RBP8.44□□□□□ -1.06
CKS1BP1-201ENST00000555221 BPNT1O95861 308 aa8.43□□□□□ -1.06
CKS1BP1-201ENST00000555221 F13A1P00488 732 aa8.43□□□□□ -1.06
CKS1BP1-201ENST00000555221 HOXB4P17483 251 aaPredicted RBP8.43□□□□□ -1.06
CKS1BP1-201ENST00000555221 MAOBP27338 520 aa8.43□□□□□ -1.06
CKS1BP1-201ENST00000555221 RAC1P63000 192 aa8.43□□□□□ -1.06
CKS1BP1-201ENST00000555221 SEPT6Q14141 434 aa8.43□□□□□ -1.06
CKS1BP1-201ENST00000555221 MAP1SQ66K74 1059 aaPredicted RBP8.43□□□□□ -1.06
CKS1BP1-201ENST00000555221 BNC2Q6ZN30 1099 aaPredicted RBP8.43□□□□□ -1.06
CKS1BP1-201ENST00000555221 JARID2Q92833 1246 aaPredicted RBP8.43□□□□□ -1.06
CKS1BP1-201ENST00000555221 GAL3ST3Q96A11 431 aa8.43□□□□□ -1.06
CKS1BP1-201ENST00000555221 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.43□□□□□ -1.06
CKS1BP1-201ENST00000555221 FAM221AA4D161 298 aa8.42□□□□□ -1.06
CKS1BP1-201ENST00000555221 CD68P34810 354 aaPredicted RBP8.42□□□□□ -1.06
CKS1BP1-201ENST00000555221 MPP2Q14168 576 aa8.42□□□□□ -1.06
CKS1BP1-201ENST00000555221 CWF19L2Q2TBE0 894 aaKnown RBP8.42□□□□□ -1.06
CKS1BP1-201ENST00000555221 GALNT11Q8NCW6 608 aa8.42□□□□□ -1.06
CKS1BP1-201ENST00000555221 NKD1Q969G9 470 aa8.42□□□□□ -1.06
CKS1BP1-201ENST00000555221 ACSBG1Q96GR2 724 aa8.42□□□□□ -1.06
CKS1BP1-201ENST00000555221 USP26Q9BXU7 913 aa8.42□□□□□ -1.06
CKS1BP1-201ENST00000555221 UBP1Q9NZI7 540 aa8.42□□□□□ -1.06
CKS1BP1-201ENST00000555221 STRIP2Q9ULQ0 834 aa8.42□□□□□ -1.06
CKS1BP1-201ENST00000555221 EFR3BQ9Y2G0 817 aa8.42□□□□□ -1.06
CKS1BP1-201ENST00000555221 CILPO75339 1184 aa8.41□□□□□ -1.06
CKS1BP1-201ENST00000555221 FGRP09769 529 aa8.41□□□□□ -1.06
CKS1BP1-201ENST00000555221 NLRP12P59046 1061 aa8.41□□□□□ -1.06
CKS1BP1-201ENST00000555221 FBXO11Q86XK2 927 aa8.41□□□□□ -1.06
CKS1BP1-201ENST00000555221 SLITRK4Q8IW52 837 aa8.41□□□□□ -1.06
CKS1BP1-201ENST00000555221 CACNA2D2Q9NY47 1150 aa8.41□□□□□ -1.06
CKS1BP1-201ENST00000555221 A0A0A0MRY4 1105 aa8.4□□□□□ -1.06
CKS1BP1-201ENST00000555221 GNB5O14775 395 aa8.4□□□□□ -1.06
CKS1BP1-201ENST00000555221 TM4SF5O14894 197 aa8.4□□□□□ -1.06
CKS1BP1-201ENST00000555221 DEAF1O75398 565 aaPredicted RBP8.4□□□□□ -1.06
CKS1BP1-201ENST00000555221 CRKP46108 304 aa8.4□□□□□ -1.06
CKS1BP1-201ENST00000555221 SOX9P48436 509 aa8.4□□□□□ -1.06
CKS1BP1-201ENST00000555221 NASPP49321 788 aaPredicted RBP8.4□□□□□ -1.06
CKS1BP1-201ENST00000555221 RPL6Q02878 288 aaKnown RBP8.4□□□□□ -1.06
CKS1BP1-201ENST00000555221 PDE3AQ14432 1141 aa8.4□□□□□ -1.06
CKS1BP1-201ENST00000555221 MCF2L2Q86YR7 1114 aa8.4□□□□□ -1.06
CKS1BP1-201ENST00000555221 ZC3H12CQ9C0D7 883 aaKnown RBP8.4□□□□□ -1.06
CKS1BP1-201ENST00000555221 GINM1Q9NU53 330 aa8.4□□□□□ -1.06
CKS1BP1-201ENST00000555221 MKL2Q9ULH7 1088 aa8.4□□□□□ -1.06
CKS1BP1-201ENST00000555221 TLR3O15455 904 aaKnown RBP8.39□□□□□ -1.07
CKS1BP1-201ENST00000555221 ARHGEF15O94989 841 aa8.39□□□□□ -1.07
CKS1BP1-201ENST00000555221 SSBP05455 408 aaKnown RBP eCLIP8.39□□□□□ -1.07
CKS1BP1-201ENST00000555221 SEZ6Q53EL9 994 aa8.39□□□□□ -1.07
CKS1BP1-201ENST00000555221 LCE2AQ5TA79 106 aaPredicted RBP8.39□□□□□ -1.07
CKS1BP1-201ENST00000555221 LINC00114Q6XXX2 140 aa8.39□□□□□ -1.07
CKS1BP1-201ENST00000555221 FMR1NBQ8N0W7 255 aaPredicted RBP8.39□□□□□ -1.07
CKS1BP1-201ENST00000555221 FBXO27Q8NI29 283 aa8.39□□□□□ -1.07
CKS1BP1-201ENST00000555221 GPBAR1Q8TDU6 330 aa8.39□□□□□ -1.07
CKS1BP1-201ENST00000555221 CCDC86Q9H6F5 360 aaKnown RBP8.39□□□□□ -1.07
CKS1BP1-201ENST00000555221 PCDHA4Q9UN74 947 aa8.39□□□□□ -1.07
CKS1BP1-201ENST00000555221 LOC100289279A0A1B0GTE1 492 aa8.38□□□□□ -1.07
CKS1BP1-201ENST00000555221 DLL1O00548 723 aa8.38□□□□□ -1.07
CKS1BP1-201ENST00000555221 WIPF1O43516 503 aa8.38□□□□□ -1.07
CKS1BP1-201ENST00000555221 ADAM11O75078 769 aa8.38□□□□□ -1.07
CKS1BP1-201ENST00000555221 ECEL1O95672 775 aa8.38□□□□□ -1.07
CKS1BP1-201ENST00000555221 GTF2F1P35269 517 aaKnown RBP eCLIP8.38□□□□□ -1.07
CKS1BP1-201ENST00000555221 ZNF165P49910 485 aa8.38□□□□□ -1.07
CKS1BP1-201ENST00000555221 PTPN11Q06124 597 aaPredicted RBP8.38□□□□□ -1.07
CKS1BP1-201ENST00000555221 FOXD4L6Q3SYB3 417 aaPredicted RBP8.38□□□□□ -1.07
CKS1BP1-201ENST00000555221 FOXD4L3Q6VB84 417 aaPredicted RBP8.38□□□□□ -1.07
CKS1BP1-201ENST00000555221 REC114Q7Z4M0 266 aa8.38□□□□□ -1.07
CKS1BP1-201ENST00000555221 TRIM11Q96F44 468 aa8.38□□□□□ -1.07
CKS1BP1-201ENST00000555221 PLVAPQ9BX97 442 aa8.38□□□□□ -1.07
CKS1BP1-201ENST00000555221 DDX3YO15523 660 aaKnown RBP8.37□□□□□ -1.07
CKS1BP1-201ENST00000555221 STK10O94804 968 aaKnown RBP8.37□□□□□ -1.07
CKS1BP1-201ENST00000555221 MCM4P33991 863 aa8.37□□□□□ -1.07
CKS1BP1-201ENST00000555221 SNRPNP63162 240 aaKnown RBP8.37□□□□□ -1.07
CKS1BP1-201ENST00000555221 TRIM28Q13263 835 aaKnown RBP8.37□□□□□ -1.07
CKS1BP1-201ENST00000555221 KIF4BQ2VIQ3 1234 aa8.37□□□□□ -1.07
CKS1BP1-201ENST00000555221 MPRIPQ6WCQ1 1025 aa8.37□□□□□ -1.07
CKS1BP1-201ENST00000555221 PODNQ7Z5L7 613 aa8.37□□□□□ -1.07
CKS1BP1-201ENST00000555221 REXO1Q8N1G1 1221 aaKnown RBP8.37□□□□□ -1.07
CKS1BP1-201ENST00000555221 CPLX3Q8WVH0 158 aa8.37□□□□□ -1.07
CKS1BP1-201ENST00000555221 HIRIP3Q9BW71 556 aaPredicted RBP8.37□□□□□ -1.07
CKS1BP1-201ENST00000555221 NOP53Q9NZM5 478 aaKnown RBP8.37□□□□□ -1.07
CKS1BP1-201ENST00000555221 SNCAIPQ9Y6H5 919 aa8.37□□□□□ -1.07
CKS1BP1-201ENST00000555221 SYNGAP1Q96PV0 1343 aa8.36□□□□□ -1.07
CKS1BP1-201ENST00000555221 CTSBP07858 339 aa8.36□□□□□ -1.07
CKS1BP1-201ENST00000555221 SLFN14P0C7P3 912 aa8.36□□□□□ -1.07
CKS1BP1-201ENST00000555221 DUOXA2Q1HG44 320 aa8.36□□□□□ -1.07
CKS1BP1-201ENST00000555221 PRRT3Q5FWE3 981 aa8.36□□□□□ -1.07
CKS1BP1-201ENST00000555221 HDXQ7Z353 690 aa8.36□□□□□ -1.07
CKS1BP1-201ENST00000555221 DHX38Q92620 1227 aaKnown RBP8.36□□□□□ -1.07
CKS1BP1-201ENST00000555221 KCNK4Q9NYG8 393 aa8.36□□□□□ -1.07
CKS1BP1-201ENST00000555221 ZNF862O60290 1169 aa8.35□□□□□ -1.07
CKS1BP1-201ENST00000555221 IMPDH2P12268 514 aa8.35□□□□□ -1.07
CKS1BP1-201ENST00000555221 ELNP15502 786 aa8.35□□□□□ -1.07
CKS1BP1-201ENST00000555221 LIG1P18858 919 aa8.35□□□□□ -1.07
CKS1BP1-201ENST00000555221 WIPI1Q5MNZ9 446 aaPredicted RBP8.35□□□□□ -1.07
CKS1BP1-201ENST00000555221 EXOSC6Q5RKV6 272 aaKnown RBP8.35□□□□□ -1.07
CKS1BP1-201ENST00000555221 SOGA3Q5TF21 947 aa8.35□□□□□ -1.07
CKS1BP1-201ENST00000555221 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.35□□□□□ -1.07
CKS1BP1-201ENST00000555221 SRRTQ9BXP5 876 aaKnown RBP8.35□□□□□ -1.07
CKS1BP1-201ENST00000555221 BRMS1Q9HCU9 246 aa8.35□□□□□ -1.07
CKS1BP1-201ENST00000555221 RAD18Q9NS91 495 aa8.35□□□□□ -1.07
CKS1BP1-201ENST00000555221 TACC3Q9Y6A5 838 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms