RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 USP17L21D6R901 530 aa17.17■□□□□ 0.34
CUX1-214ENST00000550008 SNW1Q13573 536 aaKnown RBP17.17■□□□□ 0.34
CUX1-214ENST00000550008 NECTIN1Q15223 517 aa17.17■□□□□ 0.34
CUX1-214ENST00000550008 NLRP10Q86W26 655 aa17.17■□□□□ 0.34
CUX1-214ENST00000550008 MTIF2P46199 727 aaKnown RBP17.16■□□□□ 0.34
CUX1-214ENST00000550008 GSDMDP57764 484 aa17.16■□□□□ 0.34
CUX1-214ENST00000550008 CCDC178Q5BJE1 867 aa17.16■□□□□ 0.34
CUX1-214ENST00000550008 IL25Q9H293 177 aa17.16■□□□□ 0.34
CUX1-214ENST00000550008 CLSTN2Q9H4D0 955 aa17.16■□□□□ 0.34
CUX1-214ENST00000550008 ZMYM1Q5SVZ6 1142 aa17.16■□□□□ 0.34
CUX1-214ENST00000550008 MAPK8IP1Q9UQF2 711 aa17.16■□□□□ 0.34
CUX1-214ENST00000550008 MROH2AA6NES4 1674 aa17.16■□□□□ 0.34
CUX1-214ENST00000550008 NBPF26B4DH59 902 aa17.16■□□□□ 0.34
CUX1-214ENST00000550008 NBPF14Q5TI25 921 aa17.16■□□□□ 0.34
CUX1-214ENST00000550008 NBPF10Q6P3W6 841 aaKnown RBP17.16■□□□□ 0.34
CUX1-214ENST00000550008 NBPF15Q8N660 670 aa17.16■□□□□ 0.34
CUX1-214ENST00000550008 VPS54Q9P1Q0 977 aa17.16■□□□□ 0.34
CUX1-214ENST00000550008 MROH5Q6ZUA9 1318 aa17.15■□□□□ 0.34
CUX1-214ENST00000550008 PDIA3P30101 505 aaKnown RBP17.15■□□□□ 0.34
CUX1-214ENST00000550008 STAT6P42226 847 aa17.15■□□□□ 0.34
CUX1-214ENST00000550008 GSTO1P78417 241 aa17.15■□□□□ 0.34
CUX1-214ENST00000550008 KRI1Q8N9T8 703 aaKnown RBP17.15■□□□□ 0.34
CUX1-214ENST00000550008 CHRNDQ07001 517 aa17.15■□□□□ 0.34
CUX1-214ENST00000550008 AKNAD1Q5T1N1 836 aa17.15■□□□□ 0.34
CUX1-214ENST00000550008 IFNL3Q8IZI9 196 aa17.15■□□□□ 0.34
CUX1-214ENST00000550008 CDCA7Q9BWT1 371 aaPredicted RBP17.15■□□□□ 0.34
CUX1-214ENST00000550008 SEPT11Q9NVA2 429 aaKnown RBP17.15■□□□□ 0.34
CUX1-214ENST00000550008 SPDYE4A6NLX3 237 aa17.15■□□□□ 0.34
CUX1-214ENST00000550008 USPL1Q5W0Q7 1092 aa17.15■□□□□ 0.34
CUX1-214ENST00000550008 CEP135Q66GS9 1140 aa17.15■□□□□ 0.34
CUX1-214ENST00000550008 TEX11Q8IYF3 940 aa17.15■□□□□ 0.34
CUX1-214ENST00000550008 KRT2P35908 639 aa17.14■□□□□ 0.34
CUX1-214ENST00000550008 GNG11P61952 73 aa17.14■□□□□ 0.34
CUX1-214ENST00000550008 TMEM266Q2M3C6 531 aa17.14■□□□□ 0.34
CUX1-214ENST00000550008 TRIM47Q96LD4 638 aa17.14■□□□□ 0.34
CUX1-214ENST00000550008 GJB4Q9NTQ9 266 aa17.14■□□□□ 0.34
CUX1-214ENST00000550008 POLR2DO15514 142 aaKnown RBP17.14■□□□□ 0.33
CUX1-214ENST00000550008 PRKAB2O43741 272 aa17.14■□□□□ 0.33
CUX1-214ENST00000550008 ZNF202O95125 648 aa17.14■□□□□ 0.33
CUX1-214ENST00000550008 HLA-DOAP06340 250 aa17.14■□□□□ 0.33
CUX1-214ENST00000550008 MAPKAPK5Q8IW41 473 aa17.14■□□□□ 0.33
CUX1-214ENST00000550008 ANKRD2Q9GZV1 360 aa17.14■□□□□ 0.33
CUX1-214ENST00000550008 ZSCAN12O43309 604 aa17.14■□□□□ 0.33
CUX1-214ENST00000550008 RUFY1Q96T51 708 aa17.14■□□□□ 0.33
CUX1-214ENST00000550008 USP21Q9UK80 565 aa17.14■□□□□ 0.33
CUX1-214ENST00000550008 FRMPD1Q5SYB0 1578 aa17.14■□□□□ 0.33
CUX1-214ENST00000550008 PIK3AP1Q6ZUJ8 805 aa17.14■□□□□ 0.33
CUX1-214ENST00000550008 SMIM5Q71RC9 77 aa17.14■□□□□ 0.33
CUX1-214ENST00000550008 DNAI1Q9UI46 699 aa17.14■□□□□ 0.33
CUX1-214ENST00000550008 H7C1W4 665 aa17.13■□□□□ 0.33
CUX1-214ENST00000550008 PFKFB2O60825 505 aa17.13■□□□□ 0.33
CUX1-214ENST00000550008 MYSM1Q5VVJ2 828 aa17.13■□□□□ 0.33
CUX1-214ENST00000550008 TNNI2P48788 182 aa17.13■□□□□ 0.33
CUX1-214ENST00000550008 RNF216Q9NWF9 866 aaPredicted RBP17.13■□□□□ 0.33
CUX1-214ENST00000550008 KCNH3Q9ULD8 1083 aa17.13■□□□□ 0.33
CUX1-214ENST00000550008 FSD2A1L4K1 749 aa17.13■□□□□ 0.33
CUX1-214ENST00000550008 MTX1Q13505 466 aa17.13■□□□□ 0.33
CUX1-214ENST00000550008 CALML4Q96GE6 196 aa17.13■□□□□ 0.33
CUX1-214ENST00000550008 PATL2C9JE40 543 aaKnown RBP17.12■□□□□ 0.33
CUX1-214ENST00000550008 KANK3Q6NY19 840 aa17.12■□□□□ 0.33
CUX1-214ENST00000550008 FEZ1Q99689 392 aa17.12■□□□□ 0.33
CUX1-214ENST00000550008 RAB34Q9BZG1 259 aa17.12■□□□□ 0.33
CUX1-214ENST00000550008 CDC42BPGQ6DT37 1551 aa17.12■□□□□ 0.33
CUX1-214ENST00000550008 NEMFO60524 1076 aa17.12■□□□□ 0.33
CUX1-214ENST00000550008 CCDC12Q8WUD4 166 aaPredicted RBP17.12■□□□□ 0.33
CUX1-214ENST00000550008 ZC3H13Q5T200 1668 aaKnown RBP17.12■□□□□ 0.33
CUX1-214ENST00000550008 CACNA2D4Q7Z3S7 1137 aa17.12■□□□□ 0.33
CUX1-214ENST00000550008 TTLL11Q8NHH1 800 aa17.12■□□□□ 0.33
CUX1-214ENST00000550008 FAM193AP78312 1265 aa17.12■□□□□ 0.33
CUX1-214ENST00000550008 AIFM3Q96NN9 605 aa17.12■□□□□ 0.33
CUX1-214ENST00000550008 ZDHHC9Q9Y397 364 aa17.12■□□□□ 0.33
CUX1-214ENST00000550008 RTL9Q8NET4 1388 aa17.11■□□□□ 0.33
CUX1-214ENST00000550008 BTBD18B2RXH4 712 aa17.11■□□□□ 0.33
CUX1-214ENST00000550008 CCDC181Q5TID7 509 aa17.11■□□□□ 0.33
CUX1-214ENST00000550008 DEXIO95424 95 aa17.11■□□□□ 0.33
CUX1-214ENST00000550008 LETM2Q2VYF4 491 aa17.11■□□□□ 0.33
CUX1-214ENST00000550008 TDRD12Q587J7 1177 aaKnown RBP17.11■□□□□ 0.33
CUX1-214ENST00000550008 TGFBRAP1Q8WUH2 860 aa17.11■□□□□ 0.33
CUX1-214ENST00000550008 TSC1Q92574 1164 aa17.11■□□□□ 0.33
CUX1-214ENST00000550008 INCENPQ9NQS7 918 aa17.11■□□□□ 0.33
CUX1-214ENST00000550008 KIF5CO60282 957 aa17.11■□□□□ 0.33
CUX1-214ENST00000550008 ASIC1P78348 528 aa17.11■□□□□ 0.33
CUX1-214ENST00000550008 TCERG1LQ5VWI1 586 aa17.11■□□□□ 0.33
CUX1-214ENST00000550008 CD163L1Q9NR16 1453 aa17.1■□□□□ 0.33
CUX1-214ENST00000550008 IL6STP40189 918 aaPredicted RBP17.1■□□□□ 0.33
CUX1-214ENST00000550008 PPARAQ07869 468 aa17.1■□□□□ 0.33
CUX1-214ENST00000550008 ZNF654Q8IZM8 581 aa17.1■□□□□ 0.33
CUX1-214ENST00000550008 ZNF274Q96GC6 653 aaPredicted RBP17.1■□□□□ 0.33
CUX1-214ENST00000550008 GPCPD1Q9NPB8 672 aa17.1■□□□□ 0.33
CUX1-214ENST00000550008 ATG3Q9NT62 314 aa17.1■□□□□ 0.33
CUX1-214ENST00000550008 TMEM132AQ24JP5 1023 aa17.1■□□□□ 0.33
CUX1-214ENST00000550008 FKBP15Q5T1M5 1219 aa17.1■□□□□ 0.33
CUX1-214ENST00000550008 NSUN7Q8NE18 718 aaKnown RBP17.1■□□□□ 0.33
CUX1-214ENST00000550008 CLIC6Q96NY7 704 aa17.1■□□□□ 0.33
CUX1-214ENST00000550008 ATP10DQ9P241 1426 aa17.1■□□□□ 0.33
CUX1-214ENST00000550008 GNAQP50148 359 aa17.1■□□□□ 0.33
CUX1-214ENST00000550008 TFAP4Q01664 338 aa17.1■□□□□ 0.33
CUX1-214ENST00000550008 SUSD4Q5VX71 490 aa17.1■□□□□ 0.33
CUX1-214ENST00000550008 CASQ1P31415 396 aa17.1■□□□□ 0.33
CUX1-214ENST00000550008 TRMT44Q8IYL2 757 aaKnown RBP17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms