RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 IFIT1P09914 478 aaKnown RBP21.26■□□□□ 0.99
VPS29-204ENST00000548259 ZEB1P37275 1124 aaPredicted RBP21.26■□□□□ 0.99
VPS29-204ENST00000548259 GRIK5Q16478 980 aa21.26■□□□□ 0.99
VPS29-204ENST00000548259 APOBEC3HQ6NTF7 200 aaKnown RBP21.26■□□□□ 0.99
VPS29-204ENST00000548259 SUCLG2Q96I99 432 aa21.26■□□□□ 0.99
VPS29-204ENST00000548259 PARK7Q99497 189 aaKnown RBP21.26■□□□□ 0.99
VPS29-204ENST00000548259 A0A1B0GUL6 1792 aa21.25■□□□□ 0.99
VPS29-204ENST00000548259 GJB1P08034 283 aa21.25■□□□□ 0.99
VPS29-204ENST00000548259 GJA8P48165 433 aa21.25■□□□□ 0.99
VPS29-204ENST00000548259 SALL2Q9Y467 1007 aaPredicted RBP21.25■□□□□ 0.99
VPS29-204ENST00000548259 MYPNQ86TC9 1320 aa21.25■□□□□ 0.99
VPS29-204ENST00000548259 TRIOBPQ9H2D6 2365 aa21.24■□□□□ 0.99
VPS29-204ENST00000548259 ARAP2Q8WZ64 1704 aa21.24■□□□□ 0.99
VPS29-204ENST00000548259 ECM2O94769 699 aaPredicted RBP21.24■□□□□ 0.99
VPS29-204ENST00000548259 CAPN2P17655 700 aa21.24■□□□□ 0.99
VPS29-204ENST00000548259 OSBPP22059 807 aa21.24■□□□□ 0.99
VPS29-204ENST00000548259 FCGRTP55899 365 aa21.24■□□□□ 0.99
VPS29-204ENST00000548259 MTFR1Q15390 333 aa21.24■□□□□ 0.99
VPS29-204ENST00000548259 MIGA2Q7L4E1 593 aa21.24■□□□□ 0.99
VPS29-204ENST00000548259 WDR66Q8TBY9 1149 aa21.24■□□□□ 0.99
VPS29-204ENST00000548259 FAM151AQ8WW52 585 aa21.24■□□□□ 0.99
VPS29-204ENST00000548259 RNF208Q9H0X6 261 aa21.24■□□□□ 0.99
VPS29-204ENST00000548259 KIF16BQ96L93 1317 aa21.24■□□□□ 0.99
VPS29-204ENST00000548259 CCL5P13501 91 aa21.23■□□□□ 0.99
VPS29-204ENST00000548259 BCAMP50895 628 aa21.23■□□□□ 0.99
VPS29-204ENST00000548259 PUM3Q15397 648 aaKnown RBP21.23■□□□□ 0.99
VPS29-204ENST00000548259 BICC1Q9H694 974 aaKnown RBP21.23■□□□□ 0.99
VPS29-204ENST00000548259 KCNH4Q9UQ05 1017 aa21.23■□□□□ 0.99
VPS29-204ENST00000548259 INPP5BP32019 993 aa21.22■□□□□ 0.99
VPS29-204ENST00000548259 RABL6Q3YEC7 729 aaPredicted RBP21.22■□□□□ 0.99
VPS29-204ENST00000548259 LRRC24Q50LG9 513 aa21.22■□□□□ 0.99
VPS29-204ENST00000548259 SLAIN1Q8ND83 568 aa21.22■□□□□ 0.99
VPS29-204ENST00000548259 SHISA4Q96DD7 197 aa21.22■□□□□ 0.99
VPS29-204ENST00000548259 RBM27Q9P2N5 1060 aaKnown RBP21.22■□□□□ 0.99
VPS29-204ENST00000548259 UTYO14607 1347 aa21.22■□□□□ 0.99
VPS29-204ENST00000548259 NBPF7P0C2Y1 421 aaPredicted RBP21.21■□□□□ 0.99
VPS29-204ENST00000548259 KAZALD1Q96I82 304 aa21.21■□□□□ 0.99
VPS29-204ENST00000548259 CXCL11O14625 94 aa21.2■□□□□ 0.98
VPS29-204ENST00000548259 CCDC184Q52MB2 194 aa21.2■□□□□ 0.98
VPS29-204ENST00000548259 FASTKD5Q7L8L6 764 aaKnown RBP21.2■□□□□ 0.98
VPS29-204ENST00000548259 MRS2Q9HD23 443 aa21.2■□□□□ 0.98
VPS29-204ENST00000548259 ZNF112Q9UJU3 913 aa21.2■□□□□ 0.98
VPS29-204ENST00000548259 SLC5A1P13866 664 aa21.19■□□□□ 0.98
VPS29-204ENST00000548259 NOL9Q5SY16 702 aaKnown RBP21.19■□□□□ 0.98
VPS29-204ENST00000548259 VGLL2Q8N8G2 317 aa21.19■□□□□ 0.98
VPS29-204ENST00000548259 PICK1Q9NRD5 415 aa21.19■□□□□ 0.98
VPS29-204ENST00000548259 FARP2O94887 1054 aaPredicted RBP21.18■□□□□ 0.98
VPS29-204ENST00000548259 TCP10Q12799 353 aa21.18■□□□□ 0.98
VPS29-204ENST00000548259 U2AF1L4Q8WU68 220 aaKnown RBP21.18■□□□□ 0.98
VPS29-204ENST00000548259 GNL3LQ9NVN8 582 aaKnown RBP21.18■□□□□ 0.98
VPS29-204ENST00000548259 ADGRA2Q96PE1 1338 aa21.18■□□□□ 0.98
VPS29-204ENST00000548259 A0A1W2PPC1 479 aa21.17■□□□□ 0.98
VPS29-204ENST00000548259 CTGFP29279 349 aa21.17■□□□□ 0.98
VPS29-204ENST00000548259 PRKCZQ05513 592 aa21.17■□□□□ 0.98
VPS29-204ENST00000548259 LPIN2Q92539 896 aa21.17■□□□□ 0.98
VPS29-204ENST00000548259 UBE2Q1Q7Z7E8 422 aa21.16■□□□□ 0.98
VPS29-204ENST00000548259 DAGLAQ9Y4D2 1042 aa21.16■□□□□ 0.98
VPS29-204ENST00000548259 ADCY3O60266 1144 aa21.15■□□□□ 0.98
VPS29-204ENST00000548259 EVI5O60447 810 aa21.15■□□□□ 0.98
VPS29-204ENST00000548259 LDHBP07195 334 aaKnown RBP21.15■□□□□ 0.98
VPS29-204ENST00000548259 BCRP11274 1271 aa21.15■□□□□ 0.98
VPS29-204ENST00000548259 FGFR2P21802 821 aa21.15■□□□□ 0.98
VPS29-204ENST00000548259 CDC42EP5Q6NZY7 148 aa21.15■□□□□ 0.98
VPS29-204ENST00000548259 ANKRD44Q8N8A2 993 aa21.15■□□□□ 0.98
VPS29-204ENST00000548259 USP40Q9NVE5 1235 aa21.15■□□□□ 0.98
VPS29-204ENST00000548259 ZBTB7BO15156 539 aaPredicted RBP21.14■□□□□ 0.97
VPS29-204ENST00000548259 SGPL1O95470 568 aa21.14■□□□□ 0.97
VPS29-204ENST00000548259 TFRCP02786 760 aaKnown RBP21.14■□□□□ 0.97
VPS29-204ENST00000548259 CYP2C8P10632 490 aa21.14■□□□□ 0.97
VPS29-204ENST00000548259 SLC17A8Q8NDX2 589 aa21.14■□□□□ 0.97
VPS29-204ENST00000548259 SMCR8Q8TEV9 937 aaPredicted RBP21.14■□□□□ 0.97
VPS29-204ENST00000548259 SLC45A1Q9Y2W3 748 aa21.14■□□□□ 0.97
VPS29-204ENST00000548259 MOGSQ13724 837 aa21.13■□□□□ 0.97
VPS29-204ENST00000548259 PXYLP1Q8TE99 480 aa21.13■□□□□ 0.97
VPS29-204ENST00000548259 ZHX2Q9Y6X8 837 aa21.13■□□□□ 0.97
VPS29-204ENST00000548259 PTPRCP08575 1304 aa21.12■□□□□ 0.97
VPS29-204ENST00000548259 A0A0G2JLL6 359 aaPredicted RBP21.12■□□□□ 0.97
VPS29-204ENST00000548259 EYA2O00167 538 aa21.12■□□□□ 0.97
VPS29-204ENST00000548259 TNPO2O14787 897 aaKnown RBP21.12■□□□□ 0.97
VPS29-204ENST00000548259 NFIAQ12857 509 aa21.12■□□□□ 0.97
VPS29-204ENST00000548259 DIXDC1Q155Q3 683 aa21.12■□□□□ 0.97
VPS29-204ENST00000548259 GPAT2Q6NUI2 795 aa21.12■□□□□ 0.97
VPS29-204ENST00000548259 GADL1Q6ZQY3 521 aa21.12■□□□□ 0.97
VPS29-204ENST00000548259 PRRT2Q7Z6L0 340 aaPredicted RBP21.12■□□□□ 0.97
VPS29-204ENST00000548259 ZSCAN29Q8IWY8 852 aaPredicted RBP21.12■□□□□ 0.97
VPS29-204ENST00000548259 SCYL3Q8IZE3 742 aa21.12■□□□□ 0.97
VPS29-204ENST00000548259 ZGPATQ8N5A5 531 aaKnown RBP21.12■□□□□ 0.97
VPS29-204ENST00000548259 KLHDC4Q8TBB5 520 aa21.12■□□□□ 0.97
VPS29-204ENST00000548259 UNC93B1Q9H1C4 597 aa21.12■□□□□ 0.97
VPS29-204ENST00000548259 SPINK5Q9NQ38 1064 aaPredicted RBP21.12■□□□□ 0.97
VPS29-204ENST00000548259 LRRFIP2Q9Y608 721 aaKnown RBP21.12■□□□□ 0.97
VPS29-204ENST00000548259 RANBP2P49792 3224 aaKnown RBP21.11■□□□□ 0.97
VPS29-204ENST00000548259 FLT3LGP49771 235 aa21.11■□□□□ 0.97
VPS29-204ENST00000548259 IRF5Q13568 498 aa21.11■□□□□ 0.97
VPS29-204ENST00000548259 SLF2Q8IX21 1173 aa21.11■□□□□ 0.97
VPS29-204ENST00000548259 COA7Q96BR5 231 aa21.11■□□□□ 0.97
VPS29-204ENST00000548259 PRO3102Q9H379 93 aa21.11■□□□□ 0.97
VPS29-204ENST00000548259 SEMA3EO15041 775 aa21.1■□□□□ 0.97
VPS29-204ENST00000548259 ENTPD3O75355 529 aa21.1■□□□□ 0.97
VPS29-204ENST00000548259 INHAP05111 366 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms