RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 NBPF11Q86T75 865 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 ZBTB38Q8NAP3 1195 aaPredicted RBP6.12□□□□□ -1.43
USP28-213ENST00000544967 PHAXQ9H814 394 aaKnown RBP6.12□□□□□ -1.43
USP28-213ENST00000544967 DDX60LQ5H9U9 1706 aaKnown RBP6.12□□□□□ -1.43
USP28-213ENST00000544967 A6NJR5 290 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 AP5Z1O43299 807 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 GADD45BO75293 160 aaPredicted RBP6.11□□□□□ -1.43
USP28-213ENST00000544967 DDX58O95786 925 aaKnown RBP6.11□□□□□ -1.43
USP28-213ENST00000544967 POLD1P28340 1107 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 TNNT3P45378 269 aaPredicted RBP6.11□□□□□ -1.43
USP28-213ENST00000544967 PTPN14Q15678 1187 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 MAP3K11Q16584 847 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 SRLQ86TD4 932 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 GPATCH3Q96I76 525 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 CRAMP1Q96RY5 1269 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 VPS33BQ9H267 617 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 PPP1R1BQ9UD71 204 aaPredicted RBP6.11□□□□□ -1.43
USP28-213ENST00000544967 PHLPP2Q6ZVD8 1323 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 CARNS1A5YM72 827 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 MYO1CO00159 1063 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 ZPR1O75312 459 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 PNMA6AP0CW24 399 aaPredicted RBP6.11□□□□□ -1.43
USP28-213ENST00000544967 PTGS1P23219 599 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 MAGEA9P43362 315 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 GTF2A1P52655 376 aaPredicted RBP6.11□□□□□ -1.43
USP28-213ENST00000544967 GSCP56915 257 aaPredicted RBP6.11□□□□□ -1.43
USP28-213ENST00000544967 TPD52L1Q16890 204 aaPredicted RBP6.11□□□□□ -1.43
USP28-213ENST00000544967 C17orf53Q8N3J3 647 aaPredicted RBP6.11□□□□□ -1.43
USP28-213ENST00000544967 ESYT1Q9BSJ8 1104 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 RTFDC1Q9BY42 306 aaPredicted RBP6.11□□□□□ -1.43
USP28-213ENST00000544967 FAM107BQ9H098 131 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 THSD7BQ9C0I4 1608 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 NEK4P51957 841 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 TRDNQ13061 729 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 CCDC158Q5M9N0 1113 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 DNAJC14Q6Y2X3 702 aaPredicted RBP6.11□□□□□ -1.43
USP28-213ENST00000544967 TMC4Q7Z404 712 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 DNAAF4Q8WXU2 420 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 ZSCAN31Q96LW9 406 aaPredicted RBP6.11□□□□□ -1.43
USP28-213ENST00000544967 CEP89Q96ST8 783 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 OSBPL5Q9H0X9 879 aaPredicted RBP6.11□□□□□ -1.43
USP28-213ENST00000544967 ZNF446Q9NWS9 450 aa6.11□□□□□ -1.43
USP28-213ENST00000544967 MKRN1Q9UHC7 482 aaKnown RBP6.11□□□□□ -1.43
USP28-213ENST00000544967 ZNF215Q9UL58 517 aaPredicted RBP6.11□□□□□ -1.43
USP28-213ENST00000544967 AKAP11Q9UKA4 1901 aa6.1□□□□□ -1.43
USP28-213ENST00000544967 HMMRO75330 724 aa6.1□□□□□ -1.43
USP28-213ENST00000544967 KIF4AO95239 1232 aa6.1□□□□□ -1.43
USP28-213ENST00000544967 MMP10P09238 476 aa6.1□□□□□ -1.43
USP28-213ENST00000544967 SRGNP10124 158 aa6.1□□□□□ -1.43
USP28-213ENST00000544967 PLA2G4AP47712 749 aa6.1□□□□□ -1.43
USP28-213ENST00000544967 GCKRQ14397 625 aa6.1□□□□□ -1.43
USP28-213ENST00000544967 LONRF3Q496Y0 759 aa6.1□□□□□ -1.43
USP28-213ENST00000544967 SUSD4Q5VX71 490 aa6.1□□□□□ -1.43
USP28-213ENST00000544967 CCDC186Q7Z3E2 898 aa6.1□□□□□ -1.43
USP28-213ENST00000544967 LRRC8AQ8IWT6 810 aa6.1□□□□□ -1.43
USP28-213ENST00000544967 STK31Q9BXU1 1019 aa6.1□□□□□ -1.43
USP28-213ENST00000544967 SH2B1Q9NRF2 756 aaPredicted RBP6.1□□□□□ -1.43
USP28-213ENST00000544967 STAP2Q9UGK3 403 aa6.1□□□□□ -1.43
USP28-213ENST00000544967 RSPH14Q9UHP6 348 aa6.1□□□□□ -1.43
USP28-213ENST00000544967 MRVI1Q9Y6F6 885 aa6.1□□□□□ -1.43
USP28-213ENST00000544967 CTAGE5O15320 804 aa6.1□□□□□ -1.43
USP28-213ENST00000544967 STX6O43752 255 aa6.1□□□□□ -1.43
USP28-213ENST00000544967 SERPINB2P05120 415 aa6.1□□□□□ -1.43
USP28-213ENST00000544967 CCT4P50991 539 aaKnown RBP6.1□□□□□ -1.43
USP28-213ENST00000544967 RHBDL3P58872 404 aa6.1□□□□□ -1.43
USP28-213ENST00000544967 SEMA3FQ13275 785 aa6.1□□□□□ -1.43
USP28-213ENST00000544967 C15orf52Q6ZUT6 534 aaKnown RBP6.1□□□□□ -1.43
USP28-213ENST00000544967 SDR16C5Q8N3Y7 309 aa6.1□□□□□ -1.43
USP28-213ENST00000544967 KAZALD1Q96I82 304 aa6.1□□□□□ -1.43
USP28-213ENST00000544967 TCHHQ07283 1943 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 HSPA4P34932 840 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 FOXO4P98177 505 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 TYRO3Q06418 890 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 PPP1R42Q7Z4L9 355 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 CCDC91Q7Z6B0 441 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 FCHSD1Q86WN1 690 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 CCAR2Q8N163 923 aaKnown RBP6.09□□□□□ -1.43
USP28-213ENST00000544967 DRC1Q96MC2 740 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 C16orf45Q96MC5 204 aaPredicted RBP6.09□□□□□ -1.43
USP28-213ENST00000544967 TTC14Q96N46 770 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 NUP62CLQ9H1M0 184 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 MED4Q9NPJ6 270 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 TTC41PQ6P2S7 1318 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 CDK5RAP2Q96SN8 1893 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 MYH7P12883 1935 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 EFCAB8A8MWE9 144 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 ATP2B1P20020 1258 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 PDE6BP35913 854 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 ZSCAN26Q16670 478 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 TMCO3Q6UWJ1 677 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 CCDC150Q8NCX0 1101 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 TM6SF1Q9BZW5 370 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 MAP3K2Q9Y2U5 619 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 SCN9AQ15858 1988 aa6.09□□□□□ -1.43
USP28-213ENST00000544967 FAM177BA6PVY3 158 aa6.09□□□□□ -1.44
USP28-213ENST00000544967 IRF6O14896 467 aa6.09□□□□□ -1.44
USP28-213ENST00000544967 ZFYVE27Q5T4F4 411 aa6.09□□□□□ -1.44
USP28-213ENST00000544967 PPM1EQ8WY54 764 aa6.09□□□□□ -1.44
USP28-213ENST00000544967 KCNB2Q92953 911 aa6.09□□□□□ -1.44
USP28-213ENST00000544967 SETDB2Q96T68 719 aa6.09□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms