RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 FMR1NBQ8N0W7 255 aaPredicted RBP20.99■□□□□ 0.95
VIM-209ENST00000544301 KCNG4Q8TDN1 519 aa20.99■□□□□ 0.95
VIM-209ENST00000544301 KCNF1Q9H3M0 494 aa20.99■□□□□ 0.95
VIM-209ENST00000544301 ZNF652Q9Y2D9 606 aa20.99■□□□□ 0.95
VIM-209ENST00000544301 TACC3Q9Y6A5 838 aa20.99■□□□□ 0.95
VIM-209ENST00000544301 STX1AQ16623 288 aa20.98■□□□□ 0.95
VIM-209ENST00000544301 TMEM67Q5HYA8 995 aa20.98■□□□□ 0.95
VIM-209ENST00000544301 SGMS1Q86VZ5 419 aa20.98■□□□□ 0.95
VIM-209ENST00000544301 PLA2G4DQ86XP0 818 aa20.98■□□□□ 0.95
VIM-209ENST00000544301 ALG1Q9BT22 464 aa20.98■□□□□ 0.95
VIM-209ENST00000544301 COL4A1P02462 1669 aa20.98■□□□□ 0.95
VIM-209ENST00000544301 ZBTB43O43298 467 aa20.98■□□□□ 0.95
VIM-209ENST00000544301 PRKAB2O43741 272 aa20.98■□□□□ 0.95
VIM-209ENST00000544301 IQCB1Q15051 598 aa20.98■□□□□ 0.95
VIM-209ENST00000544301 SF3A1Q15459 793 aaKnown RBP20.98■□□□□ 0.95
VIM-209ENST00000544301 C11orf57Q6ZUT1 292 aaPredicted RBP20.98■□□□□ 0.95
VIM-209ENST00000544301 MICU3Q86XE3 530 aa20.98■□□□□ 0.95
VIM-209ENST00000544301 LCORLQ8N3X6 602 aa20.98■□□□□ 0.95
VIM-209ENST00000544301 AIFM3Q96NN9 605 aa20.98■□□□□ 0.95
VIM-209ENST00000544301 ZSWIM5Q9P217 1185 aa20.98■□□□□ 0.95
VIM-209ENST00000544301 PNPLA7Q6ZV29 1317 aa20.98■□□□□ 0.95
VIM-209ENST00000544301 BCL9LQ86UU0 1499 aa20.97■□□□□ 0.95
VIM-209ENST00000544301 SPTLC2O15270 562 aa20.97■□□□□ 0.95
VIM-209ENST00000544301 GNAT2P19087 354 aa20.97■□□□□ 0.95
VIM-209ENST00000544301 ZNF75DP51815 510 aa20.97■□□□□ 0.95
VIM-209ENST00000544301 CPLX2Q6PUV4 134 aaKnown RBP20.97■□□□□ 0.95
VIM-209ENST00000544301 NFXL1Q6ZNB6 911 aa20.97■□□□□ 0.95
VIM-209ENST00000544301 COL5A3P25940 1745 aaPredicted RBP20.97■□□□□ 0.95
VIM-209ENST00000544301 TIAM2Q8IVF5 1701 aa20.97■□□□□ 0.95
VIM-209ENST00000544301 LIFRP42702 1097 aa20.96■□□□□ 0.95
VIM-209ENST00000544301 AKNAD1Q5T1N1 836 aa20.96■□□□□ 0.95
VIM-209ENST00000544301 CLEC4GQ6UXB4 293 aa20.96■□□□□ 0.95
VIM-209ENST00000544301 SYNE3Q6ZMZ3 975 aa20.96■□□□□ 0.95
VIM-209ENST00000544301 C17orf53Q8N3J3 647 aaPredicted RBP20.96■□□□□ 0.95
VIM-209ENST00000544301 CDC5LQ99459 802 aaKnown RBP20.96■□□□□ 0.95
VIM-209ENST00000544301 CNNM2Q9H8M5 875 aa20.96■□□□□ 0.95
VIM-209ENST00000544301 SPTLC3Q9NUV7 552 aa20.96■□□□□ 0.95
VIM-209ENST00000544301 BCORQ6W2J9 1755 aa20.96■□□□□ 0.95
VIM-209ENST00000544301 CHD4Q14839 1912 aa20.96■□□□□ 0.95
VIM-209ENST00000544301 LTBP4Q8N2S1 1624 aa20.96■□□□□ 0.95
VIM-209ENST00000544301 A0A1B0GVL5 298 aa20.96■□□□□ 0.95
VIM-209ENST00000544301 NDUFA8P51970 172 aa20.96■□□□□ 0.95
VIM-209ENST00000544301 NTRK3Q16288 839 aa20.96■□□□□ 0.95
VIM-209ENST00000544301 CCDC144CPQ8IYA2 1237 aa20.96■□□□□ 0.95
VIM-209ENST00000544301 PHKBQ93100 1093 aa20.96■□□□□ 0.95
VIM-209ENST00000544301 TRIM5Q9C035 493 aa20.96■□□□□ 0.95
VIM-209ENST00000544301 FAM217BQ9NTX9 383 aaPredicted RBP20.96■□□□□ 0.95
VIM-209ENST00000544301 SLC4A4Q9Y6R1 1079 aa20.96■□□□□ 0.95
VIM-209ENST00000544301 GOLGA8AA7E2F4 631 aa20.95■□□□□ 0.94
VIM-209ENST00000544301 IFIT3O14879 490 aaKnown RBP20.95■□□□□ 0.94
VIM-209ENST00000544301 ANO1Q5XXA6 986 aa20.95■□□□□ 0.94
VIM-209ENST00000544301 NACAP1Q9BZK3 213 aa20.95■□□□□ 0.94
VIM-209ENST00000544301 KRT23Q9C075 422 aa20.95■□□□□ 0.94
VIM-209ENST00000544301 LRP2BPQ9P2M1 347 aa20.95■□□□□ 0.94
VIM-209ENST00000544301 TDO2P48775 406 aa20.95■□□□□ 0.94
VIM-209ENST00000544301 ERFEQ4G0M1 354 aa20.95■□□□□ 0.94
VIM-209ENST00000544301 KRT40Q6A162 431 aa20.95■□□□□ 0.94
VIM-209ENST00000544301 MFSD6Q6ZSS7 791 aa20.95■□□□□ 0.94
VIM-209ENST00000544301 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.95■□□□□ 0.94
VIM-209ENST00000544301 MYL10Q9BUA6 226 aa20.95■□□□□ 0.94
VIM-209ENST00000544301 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.94■□□□□ 0.94
VIM-209ENST00000544301 RANBP6O60518 1105 aaKnown RBP20.94■□□□□ 0.94
VIM-209ENST00000544301 C3orf67Q6ZVT6 689 aa20.94■□□□□ 0.94
VIM-209ENST00000544301 LINC00116Q8NCU8 138 aa20.94■□□□□ 0.94
VIM-209ENST00000544301 KIAA1524Q8TCG1 905 aa20.94■□□□□ 0.94
VIM-209ENST00000544301 STAG1Q8WVM7 1258 aa20.94■□□□□ 0.94
VIM-209ENST00000544301 ANO10Q9NW15 660 aa20.94■□□□□ 0.94
VIM-209ENST00000544301 PYCARDQ9ULZ3 195 aa20.94■□□□□ 0.94
VIM-209ENST00000544301 ZNF804BA4D1E1 1349 aa20.94■□□□□ 0.94
VIM-209ENST00000544301 IARSP41252 1262 aaKnown RBP20.93■□□□□ 0.94
VIM-209ENST00000544301 MIGA1Q8NAN2 632 aa20.93■□□□□ 0.94
VIM-209ENST00000544301 SLC12A7Q9Y666 1083 aa20.93■□□□□ 0.94
VIM-209ENST00000544301 CCDC69A6NI79 296 aa20.93■□□□□ 0.94
VIM-209ENST00000544301 GOLGA6L19H0YKK7 550 aa20.93■□□□□ 0.94
VIM-209ENST00000544301 PTGS1P23219 599 aa20.93■□□□□ 0.94
VIM-209ENST00000544301 VPS37DQ86XT2 251 aa20.93■□□□□ 0.94
VIM-209ENST00000544301 ANKRD18AQ8IVF6 992 aa20.93■□□□□ 0.94
VIM-209ENST00000544301 IQSEC3Q9UPP2 1182 aaPredicted RBP20.93■□□□□ 0.94
VIM-209ENST00000544301 A0A087WWV3 80 aa20.92■□□□□ 0.94
VIM-209ENST00000544301 SF3B3Q15393 1217 aaKnown RBP20.92■□□□□ 0.94
VIM-209ENST00000544301 AXDND1Q5T1B0 1012 aaPredicted RBP20.92■□□□□ 0.94
VIM-209ENST00000544301 SDF4Q9BRK5 362 aa20.92■□□□□ 0.94
VIM-209ENST00000544301 ECM29Q5VYK3 1845 aa20.92■□□□□ 0.94
VIM-209ENST00000544301 CYP7A1P22680 504 aa20.92■□□□□ 0.94
VIM-209ENST00000544301 SLC39A14Q15043 492 aa20.92■□□□□ 0.94
VIM-209ENST00000544301 DRC7Q8IY82 874 aa20.92■□□□□ 0.94
VIM-209ENST00000544301 ERCC4Q92889 916 aaPredicted RBP20.92■□□□□ 0.94
VIM-209ENST00000544301 ZNF831Q5JPB2 1677 aa20.91■□□□□ 0.94
VIM-209ENST00000544301 GYG1P46976 350 aa20.91■□□□□ 0.94
VIM-209ENST00000544301 DNTTIP2Q5QJE6 756 aaKnown RBP20.91■□□□□ 0.94
VIM-209ENST00000544301 SARM1Q6SZW1 724 aa20.91■□□□□ 0.94
VIM-209ENST00000544301 CCDC186Q7Z3E2 898 aa20.91■□□□□ 0.94
VIM-209ENST00000544301 ADGRA1Q86SQ6 560 aa20.91■□□□□ 0.94
VIM-209ENST00000544301 NID2Q14112 1375 aa20.91■□□□□ 0.94
VIM-209ENST00000544301 STK36Q9NRP7 1315 aa20.91■□□□□ 0.94
VIM-209ENST00000544301 UQCRHLA0A096LP55 91 aa20.9■□□□□ 0.94
VIM-209ENST00000544301 WTIPA6NIX2 430 aaPredicted RBP20.9■□□□□ 0.94
VIM-209ENST00000544301 UQCRHP07919 91 aa20.9■□□□□ 0.94
VIM-209ENST00000544301 RRP12Q5JTH9 1297 aaKnown RBP20.9■□□□□ 0.94
VIM-209ENST00000544301 DHX40Q8IX18 779 aaKnown RBP20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms