RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 FPGT-TNNI3KV9GXZ4 949 aa14.24□□□□□ -0.13
RTN3-209ENST00000538995 MANSC4A6NHS7 340 aaPredicted RBP14.23□□□□□ -0.13
RTN3-209ENST00000538995 TRPA1O75762 1119 aa14.23□□□□□ -0.13
RTN3-209ENST00000538995 CACNB3P54284 484 aa14.23□□□□□ -0.13
RTN3-209ENST00000538995 INHBEP58166 350 aa14.23□□□□□ -0.13
RTN3-209ENST00000538995 CDAN1Q8IWY9 1227 aa14.23□□□□□ -0.13
RTN3-209ENST00000538995 SPATA5Q8NB90 893 aa14.23□□□□□ -0.13
RTN3-209ENST00000538995 FAM163AQ96GL9 167 aaPredicted RBP14.23□□□□□ -0.13
RTN3-209ENST00000538995 WNK4Q96J92 1243 aa14.23□□□□□ -0.13
RTN3-209ENST00000538995 CLMNQ96JQ2 1002 aa14.23□□□□□ -0.13
RTN3-209ENST00000538995 CDC42EP5Q6NZY7 148 aa14.22□□□□□ -0.13
RTN3-209ENST00000538995 ERC1Q8IUD2 1116 aa14.22□□□□□ -0.13
RTN3-209ENST00000538995 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.22□□□□□ -0.13
RTN3-209ENST00000538995 FAM151AQ8WW52 585 aa14.22□□□□□ -0.13
RTN3-209ENST00000538995 CFHR5Q9BXR6 569 aa14.22□□□□□ -0.13
RTN3-209ENST00000538995 HMG20BQ9P0W2 317 aa14.22□□□□□ -0.13
RTN3-209ENST00000538995 ABCF2Q9UG63 623 aa14.22□□□□□ -0.13
RTN3-209ENST00000538995 RFX7Q2KHR2 1363 aa14.22□□□□□ -0.13
RTN3-209ENST00000538995 IGSF3O75054 1194 aa14.21□□□□□ -0.13
RTN3-209ENST00000538995 ALDH1A1P00352 501 aa14.21□□□□□ -0.13
RTN3-209ENST00000538995 PDE3AQ14432 1141 aa14.21□□□□□ -0.13
RTN3-209ENST00000538995 HSP90AB4PQ58FF6 505 aa14.21□□□□□ -0.13
RTN3-209ENST00000538995 NOM1Q5C9Z4 860 aaKnown RBP14.21□□□□□ -0.13
RTN3-209ENST00000538995 CCDC158Q5M9N0 1113 aa14.21□□□□□ -0.13
RTN3-209ENST00000538995 DCAF15Q66K64 600 aa14.21□□□□□ -0.13
RTN3-209ENST00000538995 ERICH6Q7L0X2 663 aa14.21□□□□□ -0.13
RTN3-209ENST00000538995 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.21□□□□□ -0.13
RTN3-209ENST00000538995 ZNF512BQ96KM6 892 aaPredicted RBP14.21□□□□□ -0.13
RTN3-209ENST00000538995 MROH7-TTC4A0A0A0MT08 1334 aa14.2□□□□□ -0.14
RTN3-209ENST00000538995 MAP4K4O95819 1239 aaPredicted RBP14.2□□□□□ -0.14
RTN3-209ENST00000538995 MCAMP43121 646 aa14.2□□□□□ -0.14
RTN3-209ENST00000538995 GSTO1P78417 241 aa14.2□□□□□ -0.14
RTN3-209ENST00000538995 MAP3K9P80192 1104 aa14.2□□□□□ -0.14
RTN3-209ENST00000538995 CACNB1Q02641 598 aaPredicted RBP14.2□□□□□ -0.14
RTN3-209ENST00000538995 MKRN3Q13064 507 aaKnown RBP14.2□□□□□ -0.14
RTN3-209ENST00000538995 VGLL4Q14135 290 aa14.2□□□□□ -0.14
RTN3-209ENST00000538995 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.2□□□□□ -0.14
RTN3-209ENST00000538995 RPAP2Q8IXW5 612 aaPredicted RBP14.2□□□□□ -0.14
RTN3-209ENST00000538995 IDI2Q9BXS1 227 aa14.2□□□□□ -0.14
RTN3-209ENST00000538995 ZBTB40Q9NUA8 1239 aa14.2□□□□□ -0.14
RTN3-209ENST00000538995 USP40Q9NVE5 1235 aa14.2□□□□□ -0.14
RTN3-209ENST00000538995 CSADQ9Y600 493 aa14.2□□□□□ -0.14
RTN3-209ENST00000538995 AKAP11Q9UKA4 1901 aa14.19□□□□□ -0.14
RTN3-209ENST00000538995 LAMB1P07942 1786 aa14.19□□□□□ -0.14
RTN3-209ENST00000538995 HMMRO75330 724 aa14.19□□□□□ -0.14
RTN3-209ENST00000538995 ENTPD3O75355 529 aa14.19□□□□□ -0.14
RTN3-209ENST00000538995 LDHCP07864 332 aa14.19□□□□□ -0.14
RTN3-209ENST00000538995 MECOMQ03112 1051 aa14.19□□□□□ -0.14
RTN3-209ENST00000538995 NFIAQ12857 509 aa14.19□□□□□ -0.14
RTN3-209ENST00000538995 TTC39AQ5SRH9 613 aa14.19□□□□□ -0.14
RTN3-209ENST00000538995 PI16Q6UXB8 463 aa14.19□□□□□ -0.14
RTN3-209ENST00000538995 DBNDD2Q9BQY9 259 aa14.19□□□□□ -0.14
RTN3-209ENST00000538995 FAM198AQ9UFP1 575 aa14.19□□□□□ -0.14
RTN3-209ENST00000538995 COG6Q9Y2V7 657 aa14.19□□□□□ -0.14
RTN3-209ENST00000538995 OTOFQ9HC10 1997 aa14.19□□□□□ -0.14
RTN3-209ENST00000538995 GPR75-ASB3A0A0A6YYF3 556 aa14.18□□□□□ -0.14
RTN3-209ENST00000538995 TESPA1A2RU30 521 aaPredicted RBP14.18□□□□□ -0.14
RTN3-209ENST00000538995 GJA5P36382 358 aa14.18□□□□□ -0.14
RTN3-209ENST00000538995 BTDP43251 543 aa14.18□□□□□ -0.14
RTN3-209ENST00000538995 IFNL1Q8IU54 200 aa14.18□□□□□ -0.14
RTN3-209ENST00000538995 NSUN4Q96CB9 384 aaKnown RBP14.18□□□□□ -0.14
RTN3-209ENST00000538995 OPTNQ96CV9 577 aa14.18□□□□□ -0.14
RTN3-209ENST00000538995 WRNIP1Q96S55 665 aa14.18□□□□□ -0.14
RTN3-209ENST00000538995 ZNF341Q9BYN7 854 aa14.18□□□□□ -0.14
RTN3-209ENST00000538995 ELP3Q9H9T3 547 aa14.18□□□□□ -0.14
RTN3-209ENST00000538995 DBNLQ9UJU6 430 aaKnown RBP14.18□□□□□ -0.14
RTN3-209ENST00000538995 SPDYE5A6NIY4 337 aa14.17□□□□□ -0.14
RTN3-209ENST00000538995 NPM3O75607 178 aaKnown RBP14.17□□□□□ -0.14
RTN3-209ENST00000538995 RGS3P49796 1198 aa14.17□□□□□ -0.14
RTN3-209ENST00000538995 TCP10Q12799 353 aa14.17□□□□□ -0.14
RTN3-209ENST00000538995 OTUD7BQ6GQQ9 843 aa14.17□□□□□ -0.14
RTN3-209ENST00000538995 ZNF384Q8TF68 577 aa14.17□□□□□ -0.14
RTN3-209ENST00000538995 ABHD8Q96I13 439 aa14.17□□□□□ -0.14
RTN3-209ENST00000538995 RAI14Q9P0K7 980 aa14.17□□□□□ -0.14
RTN3-209ENST00000538995 LRP2BPQ9P2M1 347 aa14.17□□□□□ -0.14
RTN3-209ENST00000538995 EXOC6BQ9Y2D4 811 aa14.17□□□□□ -0.14
RTN3-209ENST00000538995 SNCAIPQ9Y6H5 919 aa14.17□□□□□ -0.14
RTN3-209ENST00000538995 WDHD1O75717 1129 aaPredicted RBP14.16□□□□□ -0.14
RTN3-209ENST00000538995 GTF2A2P52657 109 aa14.16□□□□□ -0.14
RTN3-209ENST00000538995 TBC1D9Q6ZT07 1266 aa14.16□□□□□ -0.14
RTN3-209ENST00000538995 ERO1BQ86YB8 467 aa14.16□□□□□ -0.14
RTN3-209ENST00000538995 EAF2Q96CJ1 260 aaPredicted RBP14.16□□□□□ -0.14
RTN3-209ENST00000538995 MCOLN1Q9GZU1 580 aa14.16□□□□□ -0.14
RTN3-209ENST00000538995 ZNF112Q9UJU3 913 aa14.16□□□□□ -0.14
RTN3-209ENST00000538995 ATRNL1Q5VV63 1379 aa14.16□□□□□ -0.14
RTN3-209ENST00000538995 COL2A1P02458 1487 aaPredicted RBP14.16□□□□□ -0.14
RTN3-209ENST00000538995 MYH2Q9UKX2 1941 aa14.15□□□□□ -0.14
RTN3-209ENST00000538995 GPR25O00155 361 aa14.15□□□□□ -0.14
RTN3-209ENST00000538995 IGF2BP3O00425 579 aaKnown RBP eCLIP14.15□□□□□ -0.14
RTN3-209ENST00000538995 CAPN15O75808 1086 aa14.15□□□□□ -0.14
RTN3-209ENST00000538995 TBC1D8O95759 1140 aa14.15□□□□□ -0.14
RTN3-209ENST00000538995 RHBDL3P58872 404 aa14.15□□□□□ -0.14
RTN3-209ENST00000538995 DGKZQ13574 1117 aa14.15□□□□□ -0.14
RTN3-209ENST00000538995 NOL9Q5SY16 702 aaKnown RBP14.15□□□□□ -0.14
RTN3-209ENST00000538995 TMED8Q6PL24 325 aaPredicted RBP14.15□□□□□ -0.14
RTN3-209ENST00000538995 CTU1Q7Z7A3 348 aaKnown RBP14.15□□□□□ -0.14
RTN3-209ENST00000538995 RHPN1Q8TCX5 695 aa14.15□□□□□ -0.14
RTN3-209ENST00000538995 KIF1BPQ96EK5 621 aa14.15□□□□□ -0.14
RTN3-209ENST00000538995 MS4A4AQ96JQ5 239 aa14.15□□□□□ -0.14
RTN3-209ENST00000538995 TLR7Q9NYK1 1049 aaKnown RBP14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms