RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 TRIM42Q8IWZ5 723 aa4.54□□□□□ -1.68
CD44-234ENST00000531873 GOLM1Q8NBJ4 401 aa4.54□□□□□ -1.68
CD44-234ENST00000531873 HIRIP3Q9BW71 556 aaPredicted RBP4.54□□□□□ -1.68
CD44-234ENST00000531873 KRTAP4-9Q9BYQ8 210 aa4.54□□□□□ -1.68
CD44-234ENST00000531873 OSBPL2Q9H1P3 480 aa4.54□□□□□ -1.68
CD44-234ENST00000531873 GPN3Q9UHW5 284 aaPredicted RBP4.54□□□□□ -1.68
CD44-234ENST00000531873 PRR12Q9ULL5 1215 aa4.54□□□□□ -1.68
CD44-234ENST00000531873 SLC6A14Q9UN76 642 aa4.54□□□□□ -1.68
CD44-234ENST00000531873 EFR3BQ9Y2G0 817 aa4.54□□□□□ -1.68
CD44-234ENST00000531873 FAM229AH3BQW9 127 aa4.53□□□□□ -1.68
CD44-234ENST00000531873 GHRHP01286 108 aa4.53□□□□□ -1.68
CD44-234ENST00000531873 CPB1P15086 417 aa4.53□□□□□ -1.68
CD44-234ENST00000531873 BMP6P22004 513 aa4.53□□□□□ -1.68
CD44-234ENST00000531873 ZNF157P51786 506 aaPredicted RBP4.53□□□□□ -1.68
CD44-234ENST00000531873 TBC1D8BQ0IIM8 1120 aa4.53□□□□□ -1.68
CD44-234ENST00000531873 MBTPS1Q14703 1052 aa4.53□□□□□ -1.68
CD44-234ENST00000531873 GRIK4Q16099 956 aa4.53□□□□□ -1.68
CD44-234ENST00000531873 SNAP47Q5SQN1 464 aa4.53□□□□□ -1.68
CD44-234ENST00000531873 PERM1Q5SV97 790 aa4.53□□□□□ -1.68
CD44-234ENST00000531873 CEP135Q66GS9 1140 aa4.53□□□□□ -1.68
CD44-234ENST00000531873 BNC2Q6ZN30 1099 aaPredicted RBP4.53□□□□□ -1.68
CD44-234ENST00000531873 FAM196AQ6ZSG2 479 aa4.53□□□□□ -1.68
CD44-234ENST00000531873 NOP9Q86U38 636 aaKnown RBP4.53□□□□□ -1.68
CD44-234ENST00000531873 FBXO27Q8NI29 283 aa4.53□□□□□ -1.68
CD44-234ENST00000531873 STK35Q8TDR2 534 aa4.53□□□□□ -1.68
CD44-234ENST00000531873 BSNDQ8WZ55 320 aa4.53□□□□□ -1.68
CD44-234ENST00000531873 GAL3ST3Q96A11 431 aa4.53□□□□□ -1.68
CD44-234ENST00000531873 PUS7Q96PZ0 661 aaKnown RBP4.53□□□□□ -1.68
CD44-234ENST00000531873 LPIN3Q9BQK8 851 aa4.53□□□□□ -1.68
CD44-234ENST00000531873 LRRC3Q9BY71 257 aa4.53□□□□□ -1.68
CD44-234ENST00000531873 CLEC4MQ9H2X3 399 aaPredicted RBP4.53□□□□□ -1.68
CD44-234ENST00000531873 IGFLR1Q9H665 355 aa4.53□□□□□ -1.68
CD44-234ENST00000531873 RNF112Q9ULX5 631 aa4.53□□□□□ -1.68
CD44-234ENST00000531873 STARD13Q9Y3M8 1113 aa4.53□□□□□ -1.68
CD44-234ENST00000531873 PCDHB5Q9Y5E4 795 aa4.53□□□□□ -1.68
CD44-234ENST00000531873 FAM221AA4D161 298 aa4.52□□□□□ -1.69
CD44-234ENST00000531873 M0R082 166 aa4.52□□□□□ -1.69
CD44-234ENST00000531873 SMNDC1O75940 238 aaKnown RBP eCLIP4.52□□□□□ -1.69
CD44-234ENST00000531873 F13A1P00488 732 aa4.52□□□□□ -1.69
CD44-234ENST00000531873 SSBP05455 408 aaKnown RBP eCLIP4.52□□□□□ -1.69
CD44-234ENST00000531873 NID1P14543 1247 aa4.52□□□□□ -1.69
CD44-234ENST00000531873 ETFBP38117 255 aa4.52□□□□□ -1.69
CD44-234ENST00000531873 PCDH1Q08174 1060 aa4.52□□□□□ -1.69
CD44-234ENST00000531873 APOBRQ0VD83 1088 aa4.52□□□□□ -1.69
CD44-234ENST00000531873 COL9A2Q14055 689 aaPredicted RBP4.52□□□□□ -1.69
CD44-234ENST00000531873 ZNF423Q2M1K9 1284 aa4.52□□□□□ -1.69
CD44-234ENST00000531873 FAM35AQ86V20 835 aa4.52□□□□□ -1.69
CD44-234ENST00000531873 TXNRD3Q86VQ6 643 aa4.52□□□□□ -1.69
CD44-234ENST00000531873 SLITRK4Q8IW52 837 aa4.52□□□□□ -1.69
CD44-234ENST00000531873 NLGN1Q8N2Q7 840 aa4.52□□□□□ -1.69
CD44-234ENST00000531873 MICALL1Q8N3F8 863 aa4.52□□□□□ -1.69
CD44-234ENST00000531873 ZNF417Q8TAU3 575 aa4.52□□□□□ -1.69
CD44-234ENST00000531873 PLD4Q96BZ4 506 aa4.52□□□□□ -1.69
CD44-234ENST00000531873 ZNF587Q96SQ5 575 aaPredicted RBP4.52□□□□□ -1.69
CD44-234ENST00000531873 SSBP4Q9BWG4 385 aaPredicted RBP4.52□□□□□ -1.69
CD44-234ENST00000531873 ZSWIM4Q9H7M6 989 aa4.52□□□□□ -1.69
CD44-234ENST00000531873 TMEM39AQ9NV64 488 aa4.52□□□□□ -1.69
CD44-234ENST00000531873 STRIP2Q9ULQ0 834 aa4.52□□□□□ -1.69
CD44-234ENST00000531873 TRIM33Q9UPN9 1127 aa4.52□□□□□ -1.69
CD44-234ENST00000531873 TBX22Q9Y458 520 aa4.52□□□□□ -1.69
CD44-234ENST00000531873 MRVI1Q9Y6F6 885 aa4.52□□□□□ -1.69
CD44-234ENST00000531873 KLF4O43474 513 aa4.51□□□□□ -1.69
CD44-234ENST00000531873 ESRRAP11474 423 aaPredicted RBP4.51□□□□□ -1.69
CD44-234ENST00000531873 SELPP16109 830 aa4.51□□□□□ -1.69
CD44-234ENST00000531873 NME2P22392 152 aa4.51□□□□□ -1.69
CD44-234ENST00000531873 ADH7P40394 386 aa4.51□□□□□ -1.69
CD44-234ENST00000531873 NRG1Q02297 640 aaPredicted RBP4.51□□□□□ -1.69
CD44-234ENST00000531873 ZNF252P-AS1Q0IIN9 211 aa4.51□□□□□ -1.69
CD44-234ENST00000531873 SEPT6Q14141 434 aa4.51□□□□□ -1.69
CD44-234ENST00000531873 BMS1Q14692 1282 aaKnown RBP4.51□□□□□ -1.69
CD44-234ENST00000531873 PCSK7Q16549 785 aa4.51□□□□□ -1.69
CD44-234ENST00000531873 SOGA3Q5TF21 947 aa4.51□□□□□ -1.69
CD44-234ENST00000531873 JAZF1Q86VZ6 243 aa4.51□□□□□ -1.69
CD44-234ENST00000531873 CKAP2LQ8IYA6 745 aa4.51□□□□□ -1.69
CD44-234ENST00000531873 HNRNPLLQ8WVV9 542 aaKnown RBP4.51□□□□□ -1.69
CD44-234ENST00000531873 GATAD2BQ8WXI9 593 aa4.51□□□□□ -1.69
CD44-234ENST00000531873 LENG1Q96BZ8 264 aaPredicted RBP4.51□□□□□ -1.69
CD44-234ENST00000531873 SHDQ96IW2 340 aa4.51□□□□□ -1.69
CD44-234ENST00000531873 ADAM19Q9H013 955 aa4.51□□□□□ -1.69
CD44-234ENST00000531873 SMG9Q9H0W8 520 aaKnown RBP4.51□□□□□ -1.69
CD44-234ENST00000531873 RBSNQ9H1K0 784 aa4.51□□□□□ -1.69
CD44-234ENST00000531873 TLR3O15455 904 aaKnown RBP4.5□□□□□ -1.69
CD44-234ENST00000531873 CILPO75339 1184 aa4.5□□□□□ -1.69
CD44-234ENST00000531873 PTPRAP18433 802 aa4.5□□□□□ -1.69
CD44-234ENST00000531873 EPHA1P21709 976 aa4.5□□□□□ -1.69
CD44-234ENST00000531873 MPP2Q14168 576 aa4.5□□□□□ -1.69
CD44-234ENST00000531873 SEZ6Q53EL9 994 aa4.5□□□□□ -1.69
CD44-234ENST00000531873 NBPF6Q5VWK0 638 aa4.5□□□□□ -1.69
CD44-234ENST00000531873 ZNF746Q6NUN9 644 aaPredicted RBP4.5□□□□□ -1.69
CD44-234ENST00000531873 CCDC81Q6ZN84 652 aa4.5□□□□□ -1.69
CD44-234ENST00000531873 ANKS3Q6ZW76 656 aa4.5□□□□□ -1.69
CD44-234ENST00000531873 PDZD3Q86UT5 571 aa4.5□□□□□ -1.69
CD44-234ENST00000531873 CCDC84Q86UT8 332 aaPredicted RBP4.5□□□□□ -1.69
CD44-234ENST00000531873 SULF2Q8IWU5 870 aa4.5□□□□□ -1.69
CD44-234ENST00000531873 FAM169BQ8N8A8 192 aa4.5□□□□□ -1.69
CD44-234ENST00000531873 GRIN3AQ8TCU5 1115 aa4.5□□□□□ -1.69
CD44-234ENST00000531873 NKD1Q969G9 470 aa4.5□□□□□ -1.69
CD44-234ENST00000531873 NBPF4Q96M43 638 aa4.5□□□□□ -1.69
CD44-234ENST00000531873 SRRTQ9BXP5 876 aaKnown RBP4.5□□□□□ -1.69
CD44-234ENST00000531873 LACRTQ9GZZ8 138 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms