RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 SAGE1Q9NXZ1 904 aa11.53□□□□□ -0.56
HDAC3-215ENST00000519474 ABCF2Q9UG63 623 aa11.53□□□□□ -0.56
HDAC3-215ENST00000519474 COG6Q9Y2V7 657 aa11.53□□□□□ -0.56
HDAC3-215ENST00000519474 TBC1D8O95759 1140 aa11.52□□□□□ -0.57
HDAC3-215ENST00000519474 ARID4AP29374 1257 aaPredicted RBP11.52□□□□□ -0.57
HDAC3-215ENST00000519474 INHBEP58166 350 aa11.52□□□□□ -0.57
HDAC3-215ENST00000519474 NFIAQ12857 509 aa11.52□□□□□ -0.57
HDAC3-215ENST00000519474 TNNI3KQ59H18 835 aa11.52□□□□□ -0.57
HDAC3-215ENST00000519474 GORABQ5T7V8 394 aa11.52□□□□□ -0.57
HDAC3-215ENST00000519474 SPTY2D1Q68D10 685 aaPredicted RBP11.52□□□□□ -0.57
HDAC3-215ENST00000519474 PI16Q6UXB8 463 aa11.52□□□□□ -0.57
HDAC3-215ENST00000519474 ANKRD13AQ8IZ07 590 aa11.52□□□□□ -0.57
HDAC3-215ENST00000519474 SPATA5Q8NB90 893 aa11.52□□□□□ -0.57
HDAC3-215ENST00000519474 FAM151AQ8WW52 585 aa11.52□□□□□ -0.57
HDAC3-215ENST00000519474 WNK4Q96J92 1243 aa11.52□□□□□ -0.57
HDAC3-215ENST00000519474 R3HDMLQ9H3Y0 253 aa11.52□□□□□ -0.57
HDAC3-215ENST00000519474 ZBTB40Q9NUA8 1239 aa11.52□□□□□ -0.57
HDAC3-215ENST00000519474 FAM198AQ9UFP1 575 aa11.52□□□□□ -0.57
HDAC3-215ENST00000519474 FPGT-TNNI3KV9GXZ4 949 aa11.52□□□□□ -0.57
HDAC3-215ENST00000519474 PDS5AQ29RF7 1337 aaKnown RBP11.52□□□□□ -0.57
HDAC3-215ENST00000519474 CASP8AP2Q9UKL3 1982 aa11.51□□□□□ -0.57
HDAC3-215ENST00000519474 CAPN15O75808 1086 aa11.51□□□□□ -0.57
HDAC3-215ENST00000519474 MCAMP43121 646 aa11.51□□□□□ -0.57
HDAC3-215ENST00000519474 MECOMQ03112 1051 aa11.51□□□□□ -0.57
HDAC3-215ENST00000519474 TCP10Q12799 353 aa11.51□□□□□ -0.57
HDAC3-215ENST00000519474 C20orf194Q5TEA3 1177 aa11.51□□□□□ -0.57
HDAC3-215ENST00000519474 MIGA2Q7L4E1 593 aa11.51□□□□□ -0.57
HDAC3-215ENST00000519474 SIRT2Q8IXJ6 389 aa11.51□□□□□ -0.57
HDAC3-215ENST00000519474 EAF2Q96CJ1 260 aaPredicted RBP11.51□□□□□ -0.57
HDAC3-215ENST00000519474 DBNDD2Q9BQY9 259 aa11.51□□□□□ -0.57
HDAC3-215ENST00000519474 CCDC8Q9H0W5 538 aaPredicted RBP11.51□□□□□ -0.57
HDAC3-215ENST00000519474 TMOD2Q9NZR1 351 aa11.51□□□□□ -0.57
HDAC3-215ENST00000519474 GAKO14976 1311 aa11.51□□□□□ -0.57
HDAC3-215ENST00000519474 ECM29Q5VYK3 1845 aa11.51□□□□□ -0.57
HDAC3-215ENST00000519474 GPR75-ASB3A0A0A6YYF3 556 aa11.5□□□□□ -0.57
HDAC3-215ENST00000519474 TESPA1A2RU30 521 aaPredicted RBP11.5□□□□□ -0.57
HDAC3-215ENST00000519474 MANSC4A6NHS7 340 aaPredicted RBP11.5□□□□□ -0.57
HDAC3-215ENST00000519474 TULP1O00294 542 aaPredicted RBP11.5□□□□□ -0.57
HDAC3-215ENST00000519474 UQCRFS1P1P0C7P4 283 aa11.5□□□□□ -0.57
HDAC3-215ENST00000519474 ZBTB48P10074 688 aaPredicted RBP11.5□□□□□ -0.57
HDAC3-215ENST00000519474 OS9Q13438 667 aaPredicted RBP11.5□□□□□ -0.57
HDAC3-215ENST00000519474 RPAP2Q8IXW5 612 aaPredicted RBP11.5□□□□□ -0.57
HDAC3-215ENST00000519474 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.5□□□□□ -0.57
HDAC3-215ENST00000519474 CNKSR2Q8WXI2 1034 aa11.5□□□□□ -0.57
HDAC3-215ENST00000519474 MS4A4AQ96JQ5 239 aa11.5□□□□□ -0.57
HDAC3-215ENST00000519474 ZNF512BQ96KM6 892 aaPredicted RBP11.5□□□□□ -0.57
HDAC3-215ENST00000519474 PTPN18Q99952 460 aa11.5□□□□□ -0.57
HDAC3-215ENST00000519474 IDI2Q9BXS1 227 aa11.5□□□□□ -0.57
HDAC3-215ENST00000519474 ELP3Q9H9T3 547 aa11.5□□□□□ -0.57
HDAC3-215ENST00000519474 SNRKQ9NRH2 765 aa11.5□□□□□ -0.57
HDAC3-215ENST00000519474 DDX19BQ9UMR2 479 aa11.5□□□□□ -0.57
HDAC3-215ENST00000519474 RHBDL3P58872 404 aa11.49□□□□□ -0.57
HDAC3-215ENST00000519474 CCDC158Q5M9N0 1113 aa11.49□□□□□ -0.57
HDAC3-215ENST00000519474 SH3BP5LQ7L8J4 393 aa11.49□□□□□ -0.57
HDAC3-215ENST00000519474 IFNL1Q8IU54 200 aa11.49□□□□□ -0.57
HDAC3-215ENST00000519474 SLF2Q8IX21 1173 aa11.49□□□□□ -0.57
HDAC3-215ENST00000519474 ZKSCAN4Q969J2 545 aaPredicted RBP11.49□□□□□ -0.57
HDAC3-215ENST00000519474 NSUN4Q96CB9 384 aaKnown RBP11.49□□□□□ -0.57
HDAC3-215ENST00000519474 OPTNQ96CV9 577 aa11.49□□□□□ -0.57
HDAC3-215ENST00000519474 ABHD8Q96I13 439 aa11.49□□□□□ -0.57
HDAC3-215ENST00000519474 CFHR5Q9BXR6 569 aa11.49□□□□□ -0.57
HDAC3-215ENST00000519474 MCOLN1Q9GZU1 580 aa11.49□□□□□ -0.57
HDAC3-215ENST00000519474 ZNF112Q9UJU3 913 aa11.49□□□□□ -0.57
HDAC3-215ENST00000519474 EXOC6BQ9Y2D4 811 aa11.49□□□□□ -0.57
HDAC3-215ENST00000519474 IGF2BP3O00425 579 aaKnown RBP eCLIP11.48□□□□□ -0.57
HDAC3-215ENST00000519474 ENTPD3O75355 529 aa11.48□□□□□ -0.57
HDAC3-215ENST00000519474 WDHD1O75717 1129 aaPredicted RBP11.48□□□□□ -0.57
HDAC3-215ENST00000519474 CYP2E1P05181 493 aaPredicted RBP11.48□□□□□ -0.57
HDAC3-215ENST00000519474 LDHCP07864 332 aa11.48□□□□□ -0.57
HDAC3-215ENST00000519474 MAP3K10Q02779 954 aa11.48□□□□□ -0.57
HDAC3-215ENST00000519474 SREBF2Q12772 1141 aa11.48□□□□□ -0.57
HDAC3-215ENST00000519474 DGKZQ13574 1117 aa11.48□□□□□ -0.57
HDAC3-215ENST00000519474 VGLL4Q14135 290 aa11.48□□□□□ -0.57
HDAC3-215ENST00000519474 PDE3AQ14432 1141 aa11.48□□□□□ -0.57
HDAC3-215ENST00000519474 TTC39AQ5SRH9 613 aa11.48□□□□□ -0.57
HDAC3-215ENST00000519474 DZIP1Q86YF9 867 aaKnown RBP11.48□□□□□ -0.57
HDAC3-215ENST00000519474 HOOK2Q96ED9 719 aa11.48□□□□□ -0.57
HDAC3-215ENST00000519474 DDX4Q9NQI0 724 aaKnown RBP11.48□□□□□ -0.57
HDAC3-215ENST00000519474 TLR7Q9NYK1 1049 aaKnown RBP11.48□□□□□ -0.57
HDAC3-215ENST00000519474 DBNLQ9UJU6 430 aaKnown RBP11.48□□□□□ -0.57
HDAC3-215ENST00000519474 AKAP11Q9UKA4 1901 aa11.48□□□□□ -0.57
HDAC3-215ENST00000519474 ARAP2Q8WZ64 1704 aa11.47□□□□□ -0.57
HDAC3-215ENST00000519474 DDTLA6NHG4 134 aaPredicted RBP11.47□□□□□ -0.57
HDAC3-215ENST00000519474 GPR25O00155 361 aa11.47□□□□□ -0.57
HDAC3-215ENST00000519474 SLURP2P0DP57 97 aa11.47□□□□□ -0.57
HDAC3-215ENST00000519474 INPP5BP32019 993 aa11.47□□□□□ -0.57
HDAC3-215ENST00000519474 BTDP43251 543 aa11.47□□□□□ -0.57
HDAC3-215ENST00000519474 ZAP70P43403 619 aa11.47□□□□□ -0.57
HDAC3-215ENST00000519474 RGS3P49796 1198 aa11.47□□□□□ -0.57
HDAC3-215ENST00000519474 NOM1Q5C9Z4 860 aaKnown RBP11.47□□□□□ -0.57
HDAC3-215ENST00000519474 RHPN1Q8TCX5 695 aa11.47□□□□□ -0.57
HDAC3-215ENST00000519474 ZNF296Q8WUU4 475 aaPredicted RBP11.47□□□□□ -0.57
HDAC3-215ENST00000519474 ZNF341Q9BYN7 854 aa11.47□□□□□ -0.57
HDAC3-215ENST00000519474 RAI14Q9P0K7 980 aa11.47□□□□□ -0.57
HDAC3-215ENST00000519474 LRP2BPQ9P2M1 347 aa11.47□□□□□ -0.57
HDAC3-215ENST00000519474 MROH7-TTC4A0A0A0MT08 1334 aa11.46□□□□□ -0.57
HDAC3-215ENST00000519474 PHF20L1A8MW92 1017 aa11.46□□□□□ -0.57
HDAC3-215ENST00000519474 ALDH1A1P00352 501 aa11.46□□□□□ -0.57
HDAC3-215ENST00000519474 GSTO1P78417 241 aa11.46□□□□□ -0.57
HDAC3-215ENST00000519474 HSP90AB4PQ58FF6 505 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms