RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 CYFIP1Q7L576 1253 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 TMPRSS7Q7RTY8 843 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 FAM124AQ86V42 546 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 ZSWIM9Q86XI8 627 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 GLYCTKQ8IVS8 523 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 PHF6Q8IWS0 365 aaKnown RBP eCLIP0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 ZSCAN29Q8IWY8 852 aaPredicted RBP0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 SP8Q8IXZ3 490 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 SMYD4Q8IYR2 804 aaPredicted RBP0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 FAM177A1Q8N128 213 aaPredicted RBP0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 LILRA2Q8N149 483 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 MFSD2AQ8NA29 543 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 ZNF280CQ8ND82 737 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 HELQQ8TDG4 1101 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 GPR152Q8TDT2 470 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 ZDHHC1Q8WTX9 485 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 EZH1Q92800 747 aaPredicted RBP0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 KCNN1Q92952 543 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 CLP1Q92989 425 aaKnown RBP0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 ZNF428Q96B54 188 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 ELMO3Q96BJ8 720 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 NUDT16Q96DE0 195 aaKnown RBP0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 POM121Q96HA1 1249 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 MEGF10Q96KG7 1140 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 MDFIQ99750 246 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 SSBP4Q9BWG4 385 aaPredicted RBP0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 KRTAP9-3Q9BYQ3 159 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 SLC6A17Q9H1V8 727 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 DNAJC25Q9H1X3 360 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 EHD4Q9H223 541 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 LIN7BQ9HAP6 207 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 PCDH18Q9HCL0 1135 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 PRDM5Q9NQX1 630 aaPredicted RBP0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 KRT82Q9NSB4 513 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 GPATCH2Q9NW75 528 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 KLK14Q9P0G3 267 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 KLF15Q9UIH9 416 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 TPX2Q9ULW0 747 aaKnown RBP0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 TRIM33Q9UPN9 1127 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 USTQ9Y2C2 406 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 DAGLAQ9Y4D2 1042 aa0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 OAS3Q9Y6K5 1087 aaKnown RBP0.86□□□□□ -2.27
RNU4-54P-201ENST00000516428 A0A096LPE4 126 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 A0A1W2PP55 124 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 A0A1W2PPZ6 126 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 B8ZZF3 427 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 PIK3CDO00329 1044 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 FANCGO15287 622 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 PPM1GO15355 546 aaPredicted RBP0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 NUAK1O60285 661 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 PRMT3O60678 531 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 SEMA7AO75326 666 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 PPFIA2O75334 1257 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 DEAF1O75398 565 aaPredicted RBP0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 ALX3O95076 343 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 BPNT1O95861 308 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 ABL1P00519 1130 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 CEACAM5P06731 702 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 C8AP07357 584 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 THBS1P07996 1170 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 GLI1P08151 1106 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 ADH5P11766 374 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 SYN1P17600 705 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 NCLP19338 710 aaKnown RBP0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 SPINK2P20155 84 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 GSTT1P30711 240 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 PREPP48147 710 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 YARSP54577 528 aaKnown RBP0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 CTSWP56202 376 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 JAG1P78504 1218 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 PCDH1Q08174 1060 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 RAD51AP2Q09MP3 1159 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 PWP1Q13610 501 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 SLC14A2Q15849 920 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 AOC3Q16853 763 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 CLEC16AQ2KHT3 1053 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 ZNF792Q3KQV3 632 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 TSGA10IPQ3SY00 556 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 FBLN7Q53RD9 439 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 COX20Q5RI15 118 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 ALG1LQ6GMV1 187 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 OGFOD2Q6N063 350 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 SYDE1Q6ZW31 735 aaPredicted RBP0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 HDXQ7Z353 690 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 THAP5Q7Z6K1 395 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 CEP120Q8N960 986 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 FLAD1Q8NFF5 587 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 PIWIL2Q8TC59 973 aaKnown RBP0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 PPP1R13LQ8WUF5 828 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 FBLIM1Q8WUP2 373 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 EDEM1Q92611 657 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 KCNB2Q92953 911 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 KLHDC7BQ96G42 594 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 KIRREL1Q96J84 757 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 EAF1Q96JC9 268 aaPredicted RBP0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 DRC1Q96MC2 740 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 UBL7Q96S82 380 aaPredicted RBP0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 CARD10Q9BWT7 1032 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 TMPRSS13Q9BYE2 586 aa0.85□□□□□ -2.27
RNU4-54P-201ENST00000516428 BHLHE41Q9C0J9 482 aaPredicted RBP0.85□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms