RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 MVPQ14764 893 aaKnown RBP22.2■■□□□ 1.14
SQSTM1-209ENST00000504627 IFNL1Q8IU54 200 aa22.2■■□□□ 1.14
SQSTM1-209ENST00000504627 ZGPATQ8N5A5 531 aaKnown RBP22.2■■□□□ 1.14
SQSTM1-209ENST00000504627 OPTNQ96CV9 577 aa22.2■■□□□ 1.14
SQSTM1-209ENST00000504627 CSADQ9Y600 493 aa22.2■■□□□ 1.14
SQSTM1-209ENST00000504627 OTUD7BQ6GQQ9 843 aa22.19■■□□□ 1.14
SQSTM1-209ENST00000504627 EXOC6Q8TAG9 804 aa22.19■■□□□ 1.14
SQSTM1-209ENST00000504627 XAGE2Q96GT9 111 aa22.19■■□□□ 1.14
SQSTM1-209ENST00000504627 DAGLAQ9Y4D2 1042 aa22.19■■□□□ 1.14
SQSTM1-209ENST00000504627 SALL1Q9NSC2 1324 aa22.19■■□□□ 1.14
SQSTM1-209ENST00000504627 PNMA6EA0A0J9YXQ4 647 aa22.18■■□□□ 1.14
SQSTM1-209ENST00000504627 GJA5P36382 358 aa22.18■■□□□ 1.14
SQSTM1-209ENST00000504627 AAMPQ13685 434 aa22.18■■□□□ 1.14
SQSTM1-209ENST00000504627 RASGRF1Q13972 1273 aa22.18■■□□□ 1.14
SQSTM1-209ENST00000504627 GORABQ5T7V8 394 aa22.18■■□□□ 1.14
SQSTM1-209ENST00000504627 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.18■■□□□ 1.14
SQSTM1-209ENST00000504627 CFHR5Q9BXR6 569 aa22.18■■□□□ 1.14
SQSTM1-209ENST00000504627 ABCF2Q9UG63 623 aa22.18■■□□□ 1.14
SQSTM1-209ENST00000504627 COG6Q9Y2V7 657 aa22.18■■□□□ 1.14
SQSTM1-209ENST00000504627 FKTNO75072 461 aa22.17■■□□□ 1.14
SQSTM1-209ENST00000504627 VGLL4Q14135 290 aa22.17■■□□□ 1.14
SQSTM1-209ENST00000504627 NOM1Q5C9Z4 860 aaKnown RBP22.17■■□□□ 1.14
SQSTM1-209ENST00000504627 DCAF15Q66K64 600 aa22.17■■□□□ 1.14
SQSTM1-209ENST00000504627 CDC42EP5Q6NZY7 148 aa22.17■■□□□ 1.14
SQSTM1-209ENST00000504627 ITPRIPQ8IWB1 547 aa22.17■■□□□ 1.14
SQSTM1-209ENST00000504627 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.17■■□□□ 1.14
SQSTM1-209ENST00000504627 USP40Q9NVE5 1235 aa22.17■■□□□ 1.14
SQSTM1-209ENST00000504627 DDX19BQ9UMR2 479 aa22.17■■□□□ 1.14
SQSTM1-209ENST00000504627 IGF2BP3O00425 579 aaKnown RBP eCLIP22.16■■□□□ 1.14
SQSTM1-209ENST00000504627 SPTY2D1Q68D10 685 aaPredicted RBP22.16■■□□□ 1.14
SQSTM1-209ENST00000504627 DZIP1Q86YF9 867 aaKnown RBP22.16■■□□□ 1.14
SQSTM1-209ENST00000504627 FAM151AQ8WW52 585 aa22.16■■□□□ 1.14
SQSTM1-209ENST00000504627 WRNIP1Q96S55 665 aa22.16■■□□□ 1.14
SQSTM1-209ENST00000504627 R3HDMLQ9H3Y0 253 aa22.16■■□□□ 1.14
SQSTM1-209ENST00000504627 ZBTB22O15209 634 aa22.15■■□□□ 1.14
SQSTM1-209ENST00000504627 TCP10Q12799 353 aa22.15■■□□□ 1.14
SQSTM1-209ENST00000504627 OS9Q13438 667 aaPredicted RBP22.15■■□□□ 1.14
SQSTM1-209ENST00000504627 PKN2Q16513 984 aaKnown RBP22.15■■□□□ 1.14
SQSTM1-209ENST00000504627 SLF2Q8IX21 1173 aa22.15■■□□□ 1.14
SQSTM1-209ENST00000504627 PPP4R2Q9NY27 417 aa22.15■■□□□ 1.14
SQSTM1-209ENST00000504627 RPAP1Q9BWH6 1393 aaPredicted RBP22.14■■□□□ 1.14
SQSTM1-209ENST00000504627 PDS5AQ29RF7 1337 aaKnown RBP22.14■■□□□ 1.14
SQSTM1-209ENST00000504627 MIGA2Q7L4E1 593 aa22.14■■□□□ 1.13
SQSTM1-209ENST00000504627 CNKSR2Q8WXI2 1034 aa22.14■■□□□ 1.13
SQSTM1-209ENST00000504627 OTUD5Q96G74 571 aa22.14■■□□□ 1.13
SQSTM1-209ENST00000504627 CHMP4BQ9H444 224 aaKnown RBP22.14■■□□□ 1.13
SQSTM1-209ENST00000504627 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.14■■□□□ 1.13
SQSTM1-209ENST00000504627 GTF2A2P52657 109 aa22.13■■□□□ 1.13
SQSTM1-209ENST00000504627 NFIAQ12857 509 aa22.13■■□□□ 1.13
SQSTM1-209ENST00000504627 ZNF341Q9BYN7 854 aa22.13■■□□□ 1.13
SQSTM1-209ENST00000504627 C1orf115Q9H7X2 142 aa22.13■■□□□ 1.13
SQSTM1-209ENST00000504627 TESPA1A2RU30 521 aaPredicted RBP22.12■■□□□ 1.13
SQSTM1-209ENST00000504627 ATP8B2P98198 1209 aa22.12■■□□□ 1.13
SQSTM1-209ENST00000504627 ERICH6Q7L0X2 663 aa22.12■■□□□ 1.13
SQSTM1-209ENST00000504627 ZKSCAN4Q969J2 545 aaPredicted RBP22.12■■□□□ 1.13
SQSTM1-209ENST00000504627 OTOFQ9HC10 1997 aa22.12■■□□□ 1.13
SQSTM1-209ENST00000504627 CCL15-CCL14A0A0B4J2E2 113 aa22.11■■□□□ 1.13
SQSTM1-209ENST00000504627 POLA2Q14181 598 aa22.11■■□□□ 1.13
SQSTM1-209ENST00000504627 CCL15Q16663 113 aa22.11■■□□□ 1.13
SQSTM1-209ENST00000504627 ERO1BQ86YB8 467 aa22.11■■□□□ 1.13
SQSTM1-209ENST00000504627 MS4A4AQ96JQ5 239 aa22.11■■□□□ 1.13
SQSTM1-209ENST00000504627 PTPN18Q99952 460 aa22.11■■□□□ 1.13
SQSTM1-209ENST00000504627 SPDYE5A6NIY4 337 aa22.1■■□□□ 1.13
SQSTM1-209ENST00000504627 ZBTB7BO15156 539 aaPredicted RBP22.1■■□□□ 1.13
SQSTM1-209ENST00000504627 SURF6O75683 361 aaKnown RBP22.1■■□□□ 1.13
SQSTM1-209ENST00000504627 MLLT1Q03111 559 aaPredicted RBP22.1■■□□□ 1.13
SQSTM1-209ENST00000504627 SPATA5Q8NB90 893 aa22.1■■□□□ 1.13
SQSTM1-209ENST00000504627 SSH3Q8TE77 659 aa22.1■■□□□ 1.13
SQSTM1-209ENST00000504627 HMG20BQ9P0W2 317 aa22.1■■□□□ 1.13
SQSTM1-209ENST00000504627 FAM198AQ9UFP1 575 aa22.1■■□□□ 1.13
SQSTM1-209ENST00000504627 SNCAIPQ9Y6H5 919 aa22.1■■□□□ 1.13
SQSTM1-209ENST00000504627 CRHR2Q13324 411 aa22.09■■□□□ 1.13
SQSTM1-209ENST00000504627 BRI3BPQ8WY22 251 aa22.09■■□□□ 1.13
SQSTM1-209ENST00000504627 HPS5Q9UPZ3 1129 aa22.09■■□□□ 1.13
SQSTM1-209ENST00000504627 GAKO14976 1311 aa22.08■■□□□ 1.13
SQSTM1-209ENST00000504627 UQCRFS1P1P0C7P4 283 aa22.08■■□□□ 1.13
SQSTM1-209ENST00000504627 ARID4AP29374 1257 aaPredicted RBP22.08■■□□□ 1.13
SQSTM1-209ENST00000504627 BTDP43251 543 aa22.08■■□□□ 1.13
SQSTM1-209ENST00000504627 RGS19P49795 217 aa22.08■■□□□ 1.13
SQSTM1-209ENST00000504627 RGS3P49796 1198 aa22.08■■□□□ 1.13
SQSTM1-209ENST00000504627 MECOMQ03112 1051 aa22.08■■□□□ 1.13
SQSTM1-209ENST00000504627 PI16Q6UXB8 463 aa22.08■■□□□ 1.13
SQSTM1-209ENST00000504627 ZSCAN29Q8IWY8 852 aaPredicted RBP22.08■■□□□ 1.13
SQSTM1-209ENST00000504627 FAM163AQ96GL9 167 aaPredicted RBP22.08■■□□□ 1.13
SQSTM1-209ENST00000504627 RAI14Q9P0K7 980 aa22.08■■□□□ 1.13
SQSTM1-209ENST00000504627 AK9Q5TCS8 1911 aa22.08■■□□□ 1.12
SQSTM1-209ENST00000504627 MROH7-TTC4A0A0A0MT08 1334 aa22.07■■□□□ 1.12
SQSTM1-209ENST00000504627 WDHD1O75717 1129 aaPredicted RBP22.07■■□□□ 1.12
SQSTM1-209ENST00000504627 CETPP11597 493 aa22.07■■□□□ 1.12
SQSTM1-209ENST00000504627 INPP5BP32019 993 aa22.07■■□□□ 1.12
SQSTM1-209ENST00000504627 TAF1CQ15572 869 aaPredicted RBP22.07■■□□□ 1.12
SQSTM1-209ENST00000504627 TNNI3KQ59H18 835 aa22.07■■□□□ 1.12
SQSTM1-209ENST00000504627 CCDC158Q5M9N0 1113 aa22.07■■□□□ 1.12
SQSTM1-209ENST00000504627 TTC39AQ5SRH9 613 aa22.07■■□□□ 1.12
SQSTM1-209ENST00000504627 FBXO46Q6PJ61 603 aaPredicted RBP22.07■■□□□ 1.12
SQSTM1-209ENST00000504627 IDI2Q9BXS1 227 aa22.07■■□□□ 1.12
SQSTM1-209ENST00000504627 GPR108Q9NPR9 543 aa22.07■■□□□ 1.12
SQSTM1-209ENST00000504627 FPGT-TNNI3KV9GXZ4 949 aa22.07■■□□□ 1.12
SQSTM1-209ENST00000504627 MYH2Q9UKX2 1941 aa22.07■■□□□ 1.12
SQSTM1-209ENST00000504627 IRF6O14896 467 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms