RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 RBM26Q5T8P6 1007 aaKnown RBP23.22■■□□□ 1.31
USP39-218ENST00000493829 TMED8Q6PL24 325 aaPredicted RBP23.22■■□□□ 1.31
USP39-218ENST00000493829 SDR42E1Q8WUS8 393 aa23.22■■□□□ 1.31
USP39-218ENST00000493829 APPP05067 770 aa23.22■■□□□ 1.31
USP39-218ENST00000493829 FAM163AQ96GL9 167 aaPredicted RBP23.22■■□□□ 1.31
USP39-218ENST00000493829 ZDHHC15Q96MV8 337 aa23.22■■□□□ 1.31
USP39-218ENST00000493829 CNOT7Q9UIV1 285 aaKnown RBP23.22■■□□□ 1.31
USP39-218ENST00000493829 FOXP2O15409 715 aa23.21■■□□□ 1.31
USP39-218ENST00000493829 HDLBPQ00341 1268 aaKnown RBP23.21■■□□□ 1.31
USP39-218ENST00000493829 APOBEC3HQ6NTF7 200 aaKnown RBP23.21■■□□□ 1.31
USP39-218ENST00000493829 MYOZ2Q9NPC6 264 aa23.21■■□□□ 1.31
USP39-218ENST00000493829 CDK5RAP2Q96SN8 1893 aa23.2■■□□□ 1.31
USP39-218ENST00000493829 ECM29Q5VYK3 1845 aa23.2■■□□□ 1.3
USP39-218ENST00000493829 EGFRP00533 1210 aa23.2■■□□□ 1.3
USP39-218ENST00000493829 HSPD1P10809 573 aaKnown RBP23.2■■□□□ 1.3
USP39-218ENST00000493829 DLGAP5Q15398 846 aa23.2■■□□□ 1.3
USP39-218ENST00000493829 TEX11Q8IYF3 940 aa23.2■■□□□ 1.3
USP39-218ENST00000493829 DPF2Q92785 391 aa23.2■■□□□ 1.3
USP39-218ENST00000493829 CRNKL1Q9BZJ0 848 aaKnown RBP23.2■■□□□ 1.3
USP39-218ENST00000493829 ZC3H4Q9UPT8 1303 aaKnown RBP23.2■■□□□ 1.3
USP39-218ENST00000493829 NAV1Q8NEY1 1877 aa23.19■■□□□ 1.3
USP39-218ENST00000493829 CACNB3P54284 484 aa23.19■■□□□ 1.3
USP39-218ENST00000493829 TBC1D10BQ4KMP7 808 aaPredicted RBP23.19■■□□□ 1.3
USP39-218ENST00000493829 DPY19L2Q6NUT2 758 aa23.19■■□□□ 1.3
USP39-218ENST00000493829 CDC42EP5Q6NZY7 148 aa23.19■■□□□ 1.3
USP39-218ENST00000493829 SAMD7Q7Z3H4 446 aa23.19■■□□□ 1.3
USP39-218ENST00000493829 USP40Q9NVE5 1235 aa23.19■■□□□ 1.3
USP39-218ENST00000493829 GPRC5DQ9NZD1 345 aa23.19■■□□□ 1.3
USP39-218ENST00000493829 SPDYE2BA6NHP3 402 aa23.19■■□□□ 1.3
USP39-218ENST00000493829 SPDYE6P0CI01 402 aa23.19■■□□□ 1.3
USP39-218ENST00000493829 RHBDL3P58872 404 aa23.19■■□□□ 1.3
USP39-218ENST00000493829 ZNF280AP59817 542 aaPredicted RBP23.19■■□□□ 1.3
USP39-218ENST00000493829 PRMT6Q96LA8 375 aaPredicted RBP23.19■■□□□ 1.3
USP39-218ENST00000493829 TDRD3Q9H7E2 651 aaKnown RBP23.19■■□□□ 1.3
USP39-218ENST00000493829 EPB41L4AQ9HCS5 686 aaPredicted RBP23.19■■□□□ 1.3
USP39-218ENST00000493829 EPS15P42566 896 aa23.18■■□□□ 1.3
USP39-218ENST00000493829 USP5P45974 858 aa23.18■■□□□ 1.3
USP39-218ENST00000493829 PPP4CP60510 307 aa23.18■■□□□ 1.3
USP39-218ENST00000493829 TGFBRAP1Q8WUH2 860 aa23.18■■□□□ 1.3
USP39-218ENST00000493829 UPF2Q9HAU5 1272 aaKnown RBP23.18■■□□□ 1.3
USP39-218ENST00000493829 CLRN2A0PK11 232 aa23.17■■□□□ 1.3
USP39-218ENST00000493829 PLCG2P16885 1265 aa23.17■■□□□ 1.3
USP39-218ENST00000493829 GNAT2P19087 354 aa23.17■■□□□ 1.3
USP39-218ENST00000493829 LMOD1P29536 600 aaPredicted RBP23.17■■□□□ 1.3
USP39-218ENST00000493829 PICALMQ13492 652 aa23.17■■□□□ 1.3
USP39-218ENST00000493829 SLC4A8Q2Y0W8 1093 aa23.17■■□□□ 1.3
USP39-218ENST00000493829 MRIQ9BWK5 157 aa23.17■■□□□ 1.3
USP39-218ENST00000493829 USP26Q9BXU7 913 aa23.17■■□□□ 1.3
USP39-218ENST00000493829 RBM8AQ9Y5S9 174 aaKnown RBP23.17■■□□□ 1.3
USP39-218ENST00000493829 GSG1L2A8MUP6 293 aa23.16■■□□□ 1.3
USP39-218ENST00000493829 H7C1D1 291 aa23.16■■□□□ 1.3
USP39-218ENST00000493829 TDO2P48775 406 aa23.16■■□□□ 1.3
USP39-218ENST00000493829 KIF4BQ2VIQ3 1234 aa23.16■■□□□ 1.3
USP39-218ENST00000493829 NBPF9Q3BBW0 867 aa23.16■■□□□ 1.3
USP39-218ENST00000493829 MAPKAPK5Q8IW41 473 aa23.16■■□□□ 1.3
USP39-218ENST00000493829 DSCC1Q9BVC3 393 aa23.16■■□□□ 1.3
USP39-218ENST00000493829 BAZ2AQ9UIF9 1905 aaKnown RBP23.16■■□□□ 1.3
USP39-218ENST00000493829 FOCADQ5VW36 1801 aa23.16■■□□□ 1.3
USP39-218ENST00000493829 GLTPD2A6NH11 291 aa23.16■■□□□ 1.3
USP39-218ENST00000493829 EIF5BO60841 1220 aaKnown RBP23.16■■□□□ 1.3
USP39-218ENST00000493829 TRPM4Q8TD43 1214 aa23.16■■□□□ 1.3
USP39-218ENST00000493829 PATL2C9JE40 543 aaKnown RBP23.15■■□□□ 1.3
USP39-218ENST00000493829 MAP4K1Q92918 833 aa23.15■■□□□ 1.3
USP39-218ENST00000493829 NAPBQ9H115 298 aa23.15■■□□□ 1.3
USP39-218ENST00000493829 WNT10BO00744 389 aa23.14■■□□□ 1.29
USP39-218ENST00000493829 CERS3Q8IU89 383 aa23.14■■□□□ 1.29
USP39-218ENST00000493829 IFNL3Q8IZI9 196 aa23.14■■□□□ 1.29
USP39-218ENST00000493829 NACAP1Q9BZK3 213 aa23.14■■□□□ 1.29
USP39-218ENST00000493829 VEZTQ9HBM0 779 aa23.14■■□□□ 1.29
USP39-218ENST00000493829 SAP30BPQ9UHR5 308 aaKnown RBP23.14■■□□□ 1.29
USP39-218ENST00000493829 ASTN2O75129 1339 aaPredicted RBP23.14■■□□□ 1.29
USP39-218ENST00000493829 FLT1P17948 1338 aa23.14■■□□□ 1.29
USP39-218ENST00000493829 DDX60LQ5H9U9 1706 aaKnown RBP23.14■■□□□ 1.29
USP39-218ENST00000493829 WDHD1O75717 1129 aaPredicted RBP23.13■■□□□ 1.29
USP39-218ENST00000493829 NFIAQ12857 509 aa23.13■■□□□ 1.29
USP39-218ENST00000493829 DCP1AQ9NPI6 582 aaPredicted RBP23.13■■□□□ 1.29
USP39-218ENST00000493829 DDX4Q9NQI0 724 aaKnown RBP23.13■■□□□ 1.29
USP39-218ENST00000493829 U3KPZ7 1027 aaPredicted RBP23.13■■□□□ 1.29
USP39-218ENST00000493829 LAMB1P07942 1786 aa23.13■■□□□ 1.29
USP39-218ENST00000493829 FGAP02671 866 aa23.13■■□□□ 1.29
USP39-218ENST00000493829 HAND2P61296 217 aa23.13■■□□□ 1.29
USP39-218ENST00000493829 MTMR14Q8NCE2 650 aa23.13■■□□□ 1.29
USP39-218ENST00000493829 C22orf23Q9BZE7 217 aa23.13■■□□□ 1.29
USP39-218ENST00000493829 ZNF70Q9UC06 446 aaPredicted RBP23.13■■□□□ 1.29
USP39-218ENST00000493829 SCAF8Q9UPN6 1271 aaKnown RBP23.13■■□□□ 1.29
USP39-218ENST00000493829 MYO1BO43795 1136 aa23.12■■□□□ 1.29
USP39-218ENST00000493829 TCP10Q12799 353 aa23.12■■□□□ 1.29
USP39-218ENST00000493829 DDRGK1Q96HY6 314 aa23.12■■□□□ 1.29
USP39-218ENST00000493829 ZBED3Q96IU2 234 aaPredicted RBP23.12■■□□□ 1.29
USP39-218ENST00000493829 L3MBTL3Q96JM7 780 aaPredicted RBP23.12■■□□□ 1.29
USP39-218ENST00000493829 MCM9Q9NXL9 1143 aa23.12■■□□□ 1.29
USP39-218ENST00000493829 TMOD2Q9NZR1 351 aa23.12■■□□□ 1.29
USP39-218ENST00000493829 PALD1Q9ULE6 856 aa23.12■■□□□ 1.29
USP39-218ENST00000493829 LAMA4Q16363 1823 aa23.12■■□□□ 1.29
USP39-218ENST00000493829 CYP2D7A0A087X1C5 515 aa23.11■■□□□ 1.29
USP39-218ENST00000493829 TCP10L2B9ZVM9 353 aa23.11■■□□□ 1.29
USP39-218ENST00000493829 SPDYE2Q495Y8 402 aa23.11■■□□□ 1.29
USP39-218ENST00000493829 ZNF526Q8TF50 670 aaPredicted RBP23.11■■□□□ 1.29
USP39-218ENST00000493829 ATP8A2Q9NTI2 1148 aa23.11■■□□□ 1.29
USP39-218ENST00000493829 CYP2D6P10635 497 aa23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms