RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 DUSP9Q99956 384 aaKnown RBP3.76□□□□□ -1.81
HMGB1-208ENST00000490788 CBX8Q9HC52 389 aa3.76□□□□□ -1.81
HMGB1-208ENST00000490788 STOML1Q9UBI4 398 aa3.76□□□□□ -1.81
HMGB1-208ENST00000490788 PPM1HQ9ULR3 514 aa3.76□□□□□ -1.81
HMGB1-208ENST00000490788 TTF2Q9UNY4 1162 aaKnown RBP3.76□□□□□ -1.81
HMGB1-208ENST00000490788 USP17L7P0C7H9 530 aa3.75□□□□□ -1.81
HMGB1-208ENST00000490788 SLFN14P0C7P3 912 aa3.75□□□□□ -1.81
HMGB1-208ENST00000490788 AKAP4Q5JQC9 854 aa3.75□□□□□ -1.81
HMGB1-208ENST00000490788 TPTE2Q6XPS3 522 aa3.75□□□□□ -1.81
HMGB1-208ENST00000490788 PRR23CQ6ZRP0 262 aa3.75□□□□□ -1.81
HMGB1-208ENST00000490788 Q6ZS46 218 aa3.75□□□□□ -1.81
HMGB1-208ENST00000490788 SMG8Q8ND04 991 aaKnown RBP3.75□□□□□ -1.81
HMGB1-208ENST00000490788 GLIS3Q8NEA6 775 aa3.75□□□□□ -1.81
HMGB1-208ENST00000490788 KCNB2Q92953 911 aa3.75□□□□□ -1.81
HMGB1-208ENST00000490788 ACSBG1Q96GR2 724 aa3.75□□□□□ -1.81
HMGB1-208ENST00000490788 UBL7Q96S82 380 aaPredicted RBP3.75□□□□□ -1.81
HMGB1-208ENST00000490788 BCL2L13Q9BXK5 485 aa3.75□□□□□ -1.81
HMGB1-208ENST00000490788 OSBPL7Q9BZF2 842 aa3.75□□□□□ -1.81
HMGB1-208ENST00000490788 ZC3H12CQ9C0D7 883 aaKnown RBP3.75□□□□□ -1.81
HMGB1-208ENST00000490788 AP4E1Q9UPM8 1137 aa3.75□□□□□ -1.81
HMGB1-208ENST00000490788 HIF3AQ9Y2N7 669 aa3.75□□□□□ -1.81
HMGB1-208ENST00000490788 RAXQ9Y2V3 346 aa3.75□□□□□ -1.81
HMGB1-208ENST00000490788 GSC2O15499 205 aa3.74□□□□□ -1.81
HMGB1-208ENST00000490788 GSTP1P09211 210 aaKnown RBP3.74□□□□□ -1.81
HMGB1-208ENST00000490788 BMP3P12645 472 aa3.74□□□□□ -1.81
HMGB1-208ENST00000490788 PREPP48147 710 aa3.74□□□□□ -1.81
HMGB1-208ENST00000490788 FAAP100Q0VG06 881 aa3.74□□□□□ -1.81
HMGB1-208ENST00000490788 LRRC14Q15048 493 aa3.74□□□□□ -1.81
HMGB1-208ENST00000490788 DNAJC14Q6Y2X3 702 aaPredicted RBP3.74□□□□□ -1.81
HMGB1-208ENST00000490788 DYMQ7RTS9 669 aa3.74□□□□□ -1.81
HMGB1-208ENST00000490788 NPAS4Q8IUM7 802 aa3.74□□□□□ -1.81
HMGB1-208ENST00000490788 SULF2Q8IWU5 870 aa3.74□□□□□ -1.81
HMGB1-208ENST00000490788 GIMAP7Q8NHV1 300 aa3.74□□□□□ -1.81
HMGB1-208ENST00000490788 MYRFLQ96LU7 910 aa3.74□□□□□ -1.81
HMGB1-208ENST00000490788 TMPRSS13Q9BYE2 586 aa3.74□□□□□ -1.81
HMGB1-208ENST00000490788 SUGCTQ9HAC7 445 aa3.74□□□□□ -1.81
HMGB1-208ENST00000490788 PIDD1Q9HB75 910 aa3.74□□□□□ -1.81
HMGB1-208ENST00000490788 PICK1Q9NRD5 415 aa3.74□□□□□ -1.81
HMGB1-208ENST00000490788 PARP2Q9UGN5 583 aa3.74□□□□□ -1.81
HMGB1-208ENST00000490788 AK5Q9Y6K8 562 aa3.74□□□□□ -1.81
HMGB1-208ENST00000490788 TM4SF5O14894 197 aa3.73□□□□□ -1.81
HMGB1-208ENST00000490788 SORBS3O60504 671 aa3.73□□□□□ -1.81
HMGB1-208ENST00000490788 FBXO24O75426 580 aa3.73□□□□□ -1.81
HMGB1-208ENST00000490788 ADH5P11766 374 aa3.73□□□□□ -1.81
HMGB1-208ENST00000490788 NME2P22392 152 aa3.73□□□□□ -1.81
HMGB1-208ENST00000490788 ARNTP27540 789 aa3.73□□□□□ -1.81
HMGB1-208ENST00000490788 SOX4Q06945 474 aaPredicted RBP3.73□□□□□ -1.81
HMGB1-208ENST00000490788 CCDC85BQ15834 202 aaPredicted RBP3.73□□□□□ -1.81
HMGB1-208ENST00000490788 MAP1SQ66K74 1059 aaPredicted RBP3.73□□□□□ -1.81
HMGB1-208ENST00000490788 PAOXQ6QHF9 649 aa3.73□□□□□ -1.81
HMGB1-208ENST00000490788 PPP1R3FQ6ZSY5 799 aaPredicted RBP3.73□□□□□ -1.81
HMGB1-208ENST00000490788 BEND4Q6ZU67 534 aa3.73□□□□□ -1.81
HMGB1-208ENST00000490788 CLEC10AQ8IUN9 316 aa3.73□□□□□ -1.81
HMGB1-208ENST00000490788 FAM46AQ96IP4 442 aaKnown RBP3.73□□□□□ -1.81
HMGB1-208ENST00000490788 TRIM56Q9BRZ2 755 aaKnown RBP3.73□□□□□ -1.81
HMGB1-208ENST00000490788 VTI1BQ9UEU0 232 aa3.73□□□□□ -1.81
HMGB1-208ENST00000490788 CC2D2AQ9P2K1 1620 aa3.73□□□□□ -1.81
HMGB1-208ENST00000490788 LMTK3Q96Q04 1460 aa3.73□□□□□ -1.81
HMGB1-208ENST00000490788 RB1CC1Q8TDY2 1594 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 FAM95CA0A1B0GW59 222 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 AOC2O75106 756 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 DLGAP3O95886 979 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 DRD2P14416 443 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 LIG1P18858 919 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 RAB6AP20340 208 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 MAP4P27816 1152 aaKnown RBP3.72□□□□□ -1.81
HMGB1-208ENST00000490788 ASPAP45381 313 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 MFAP1P55081 439 aaKnown RBP3.72□□□□□ -1.81
HMGB1-208ENST00000490788 DAB2P98082 770 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 ID3Q02535 119 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 MAP7Q14244 749 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 NFKBIBQ15653 356 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 LLGL2Q6P1M3 1020 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 SV2BQ7L1I2 683 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 FAM20CQ8IXL6 584 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 ARMC10Q8N2F6 343 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 C3orf58Q8NDZ4 430 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 GIPC2Q8TF65 315 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 NECAB3Q96P71 396 aaPredicted RBP3.72□□□□□ -1.81
HMGB1-208ENST00000490788 FAM83CQ9BQN1 747 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 NRSN2Q9GZP1 204 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 ATXN3LQ9H3M9 355 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 SSU72Q9NP77 194 aaKnown RBP3.72□□□□□ -1.81
HMGB1-208ENST00000490788 KRT82Q9NSB4 513 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 RNF114Q9Y508 228 aa3.72□□□□□ -1.81
HMGB1-208ENST00000490788 RNGTTO60942 597 aaKnown RBP3.71□□□□□ -1.82
HMGB1-208ENST00000490788 TIAF1O95411 115 aa3.71□□□□□ -1.82
HMGB1-208ENST00000490788 ECEL1O95672 775 aa3.71□□□□□ -1.82
HMGB1-208ENST00000490788 IGLV1-40P01703 118 aa3.71□□□□□ -1.82
HMGB1-208ENST00000490788 RLBP1P12271 317 aa3.71□□□□□ -1.82
HMGB1-208ENST00000490788 FSTP19883 344 aa3.71□□□□□ -1.82
HMGB1-208ENST00000490788 TAF1CQ15572 869 aaPredicted RBP3.71□□□□□ -1.82
HMGB1-208ENST00000490788 SGO2Q562F6 1265 aa3.71□□□□□ -1.82
HMGB1-208ENST00000490788 TMC4Q7Z404 712 aa3.71□□□□□ -1.82
HMGB1-208ENST00000490788 TRIM42Q8IWZ5 723 aa3.71□□□□□ -1.82
HMGB1-208ENST00000490788 FBLIM1Q8WUP2 373 aa3.71□□□□□ -1.82
HMGB1-208ENST00000490788 FAM161BQ96MY7 647 aa3.71□□□□□ -1.82
HMGB1-208ENST00000490788 WDR18Q9BV38 432 aa3.71□□□□□ -1.82
HMGB1-208ENST00000490788 CCDC86Q9H6F5 360 aaKnown RBP3.71□□□□□ -1.82
HMGB1-208ENST00000490788 C7orf69Q9H7B7 122 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms