RNA–Protein interactions for RNA: ENST00000490278.1

CD46-216, Transcript of CD46 molecule, humanhuman

TSL 2

Gene CD46, Length 747 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-216ENST00000490278 TFE3P19532 575 aaPredicted RBP6.37□□□□□ -1.39
CD46-216ENST00000490278 EIF4A3P38919 411 aaKnown RBP6.37□□□□□ -1.39
CD46-216ENST00000490278 HNRNPUQ00839 825 aaKnown RBP eCLIP6.37□□□□□ -1.39
CD46-216ENST00000490278 LMNB2Q03252 620 aa6.37□□□□□ -1.39
CD46-216ENST00000490278 CAMK2GQ13555 558 aaPredicted RBP6.37□□□□□ -1.39
CD46-216ENST00000490278 ZC3H12CQ9C0D7 883 aaKnown RBP6.37□□□□□ -1.39
CD46-216ENST00000490278 MRPL18Q9H0U6 180 aaKnown RBP6.37□□□□□ -1.39
CD46-216ENST00000490278 MIR1-1HGQ9H1L0 117 aa6.37□□□□□ -1.39
CD46-216ENST00000490278 KRT82Q9NSB4 513 aa6.37□□□□□ -1.39
CD46-216ENST00000490278 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.36□□□□□ -1.39
CD46-216ENST00000490278 MSTNO14793 375 aa6.36□□□□□ -1.39
CD46-216ENST00000490278 CTSBP07858 339 aa6.36□□□□□ -1.39
CD46-216ENST00000490278 COL8A1P27658 744 aa6.36□□□□□ -1.39
CD46-216ENST00000490278 PDE3AQ14432 1141 aa6.36□□□□□ -1.39
CD46-216ENST00000490278 GRIK4Q16099 956 aa6.36□□□□□ -1.39
CD46-216ENST00000490278 CCDC84Q86UT8 332 aaPredicted RBP6.36□□□□□ -1.39
CD46-216ENST00000490278 TRIM42Q8IWZ5 723 aa6.36□□□□□ -1.39
CD46-216ENST00000490278 UBASH3BQ8TF42 649 aa6.36□□□□□ -1.39
CD46-216ENST00000490278 CCDC86Q9H6F5 360 aaKnown RBP6.36□□□□□ -1.39
CD46-216ENST00000490278 ADAMTS1Q9UHI8 967 aa6.36□□□□□ -1.39
CD46-216ENST00000490278 PCDHB5Q9Y5E4 795 aa6.36□□□□□ -1.39
CD46-216ENST00000490278 WISP1O95388 367 aa6.35□□□□□ -1.39
CD46-216ENST00000490278 DLGAP3O95886 979 aa6.35□□□□□ -1.39
CD46-216ENST00000490278 ITGB2P05107 769 aa6.35□□□□□ -1.39
CD46-216ENST00000490278 ZC3H6P61129 1189 aaKnown RBP6.35□□□□□ -1.39
CD46-216ENST00000490278 FAM160A1Q05DH4 1040 aa6.35□□□□□ -1.39
CD46-216ENST00000490278 PLA2G4EQ3MJ16 856 aa6.35□□□□□ -1.39
CD46-216ENST00000490278 EXOSC6Q5RKV6 272 aaKnown RBP6.35□□□□□ -1.39
CD46-216ENST00000490278 SNAP47Q5SQN1 464 aa6.35□□□□□ -1.39
CD46-216ENST00000490278 SHISA2Q6UWI4 295 aa6.35□□□□□ -1.39
CD46-216ENST00000490278 MPRIPQ6WCQ1 1025 aa6.35□□□□□ -1.39
CD46-216ENST00000490278 ACAD11Q709F0 780 aa6.35□□□□□ -1.39
CD46-216ENST00000490278 ALYREFQ86V81 257 aaKnown RBP6.35□□□□□ -1.39
CD46-216ENST00000490278 KIAA0825Q8IV33 1275 aa6.35□□□□□ -1.39
CD46-216ENST00000490278 ZNF296Q8WUU4 475 aaPredicted RBP6.35□□□□□ -1.39
CD46-216ENST00000490278 SPON2Q9BUD6 331 aa6.35□□□□□ -1.39
CD46-216ENST00000490278 RUSC1Q9BVN2 902 aa6.35□□□□□ -1.39
CD46-216ENST00000490278 KRTAP9-2Q9BYQ4 174 aa6.35□□□□□ -1.39
CD46-216ENST00000490278 ACBD3Q9H3P7 528 aa6.35□□□□□ -1.39
CD46-216ENST00000490278 KCNQ5Q9NR82 932 aa6.35□□□□□ -1.39
CD46-216ENST00000490278 CACNA2D2Q9NY47 1150 aa6.35□□□□□ -1.39
CD46-216ENST00000490278 SUPT16HQ9Y5B9 1047 aaKnown RBP6.35□□□□□ -1.39
CD46-216ENST00000490278 MEGF11A6BM72 1044 aa6.34□□□□□ -1.39
CD46-216ENST00000490278 ZNF862O60290 1169 aa6.34□□□□□ -1.39
CD46-216ENST00000490278 APBA3O96018 575 aa6.34□□□□□ -1.39
CD46-216ENST00000490278 SELPP16109 830 aa6.34□□□□□ -1.39
CD46-216ENST00000490278 GARTP22102 1010 aa6.34□□□□□ -1.39
CD46-216ENST00000490278 SEPT6Q14141 434 aa6.34□□□□□ -1.39
CD46-216ENST00000490278 DIEXFQ68CQ4 756 aaKnown RBP6.34□□□□□ -1.39
CD46-216ENST00000490278 FBXL19Q6PCT2 694 aa6.34□□□□□ -1.39
CD46-216ENST00000490278 KIAA1211Q6ZU35 1233 aa6.34□□□□□ -1.39
CD46-216ENST00000490278 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.34□□□□□ -1.39
CD46-216ENST00000490278 TMEM130Q8N3G9 435 aa6.34□□□□□ -1.39
CD46-216ENST00000490278 GOLM1Q8NBJ4 401 aa6.34□□□□□ -1.39
CD46-216ENST00000490278 GPBAR1Q8TDU6 330 aa6.34□□□□□ -1.39
CD46-216ENST00000490278 JARID2Q92833 1246 aaPredicted RBP6.34□□□□□ -1.39
CD46-216ENST00000490278 GAL3ST3Q96A11 431 aa6.34□□□□□ -1.39
CD46-216ENST00000490278 LENG1Q96BZ8 264 aaPredicted RBP6.34□□□□□ -1.39
CD46-216ENST00000490278 ACSBG1Q96GR2 724 aa6.34□□□□□ -1.39
CD46-216ENST00000490278 NACC1Q96RE7 527 aa6.34□□□□□ -1.39
CD46-216ENST00000490278 SPOCK3Q9BQ16 436 aa6.34□□□□□ -1.39
CD46-216ENST00000490278 RNF208Q9H0X6 261 aa6.34□□□□□ -1.39
CD46-216ENST00000490278 USP21Q9UK80 565 aa6.34□□□□□ -1.39
CD46-216ENST00000490278 C9orf172C9J069 976 aa6.33□□□□□ -1.4
CD46-216ENST00000490278 GREM1O60565 184 aa6.33□□□□□ -1.4
CD46-216ENST00000490278 LIG1P18858 919 aa6.33□□□□□ -1.4
CD46-216ENST00000490278 PTPN11Q06124 597 aaPredicted RBP6.33□□□□□ -1.4
CD46-216ENST00000490278 KIF4BQ2VIQ3 1234 aa6.33□□□□□ -1.4
CD46-216ENST00000490278 BNC2Q6ZN30 1099 aaPredicted RBP6.33□□□□□ -1.4
CD46-216ENST00000490278 WDR89Q96FK6 387 aaPredicted RBP6.33□□□□□ -1.4
CD46-216ENST00000490278 C8orf37Q96NL8 207 aa6.33□□□□□ -1.4
CD46-216ENST00000490278 PSMG3-AS1Q96PY0 264 aa6.33□□□□□ -1.4
CD46-216ENST00000490278 TMPRSS13Q9BYE2 586 aa6.33□□□□□ -1.4
CD46-216ENST00000490278 RAD18Q9NS91 495 aa6.33□□□□□ -1.4
CD46-216ENST00000490278 PCDHA4Q9UN74 947 aa6.33□□□□□ -1.4
CD46-216ENST00000490278 INPP5FQ9Y2H2 1132 aa6.33□□□□□ -1.4
CD46-216ENST00000490278 KRTAP9-6A0A140TA67 174 aa6.32□□□□□ -1.4
CD46-216ENST00000490278 F8W735 103 aaPredicted RBP6.32□□□□□ -1.4
CD46-216ENST00000490278 AOC2O75106 756 aa6.32□□□□□ -1.4
CD46-216ENST00000490278 F13A1P00488 732 aa6.32□□□□□ -1.4
CD46-216ENST00000490278 SLFN14P0C7P3 912 aa6.32□□□□□ -1.4
CD46-216ENST00000490278 TNNI2P48788 182 aa6.32□□□□□ -1.4
CD46-216ENST00000490278 NRG1Q02297 640 aaPredicted RBP6.32□□□□□ -1.4
CD46-216ENST00000490278 PAK2Q13177 524 aa6.32□□□□□ -1.4
CD46-216ENST00000490278 GNL2Q13823 731 aaKnown RBP6.32□□□□□ -1.4
CD46-216ENST00000490278 NUTM2GQ5VZR2 741 aa6.32□□□□□ -1.4
CD46-216ENST00000490278 FAM196AQ6ZSG2 479 aa6.32□□□□□ -1.4
CD46-216ENST00000490278 GATAD2BQ8WXI9 593 aa6.32□□□□□ -1.4
CD46-216ENST00000490278 DCAF5Q96JK2 942 aa6.32□□□□□ -1.4
CD46-216ENST00000490278 WDR18Q9BV38 432 aa6.32□□□□□ -1.4
CD46-216ENST00000490278 AKTIPQ9H8T0 292 aa6.32□□□□□ -1.4
CD46-216ENST00000490278 CAPN10Q9HC96 672 aa6.32□□□□□ -1.4
CD46-216ENST00000490278 CYP4F12Q9HCS2 524 aa6.32□□□□□ -1.4
CD46-216ENST00000490278 ROBO2Q9HCK4 1378 aa6.31□□□□□ -1.4
CD46-216ENST00000490278 SYNGAP1Q96PV0 1343 aa6.31□□□□□ -1.4
CD46-216ENST00000490278 FAM221AA4D161 298 aa6.31□□□□□ -1.4
CD46-216ENST00000490278 BPNT1O95861 308 aa6.31□□□□□ -1.4
CD46-216ENST00000490278 GJA8P48165 433 aa6.31□□□□□ -1.4
CD46-216ENST00000490278 NAALADL2Q58DX5 795 aa6.31□□□□□ -1.4
CD46-216ENST00000490278 AGGF1Q8N302 714 aaeCLIP6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms