RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 ZKSCAN4Q969J2 545 aaPredicted RBP30.45■■■□□ 2.47
LIME1-206ENST00000487026 OTUD5Q96G74 571 aa30.45■■■□□ 2.47
LIME1-206ENST00000487026 SEMA3EO15041 775 aa30.44■■■□□ 2.46
LIME1-206ENST00000487026 GNAI2P04899 355 aa30.44■■■□□ 2.46
LIME1-206ENST00000487026 TCP10Q12799 353 aa30.44■■■□□ 2.46
LIME1-206ENST00000487026 WRNIP1Q96S55 665 aa30.44■■■□□ 2.46
LIME1-206ENST00000487026 SALL1Q9NSC2 1324 aa30.44■■■□□ 2.46
LIME1-206ENST00000487026 A0A1B0GUL7 405 aa30.43■■■□□ 2.46
LIME1-206ENST00000487026 NFIAQ12857 509 aa30.43■■■□□ 2.46
LIME1-206ENST00000487026 DIEXFQ68CQ4 756 aaKnown RBP30.43■■■□□ 2.46
LIME1-206ENST00000487026 BRI3BPQ8WY22 251 aa30.43■■■□□ 2.46
LIME1-206ENST00000487026 USP40Q9NVE5 1235 aa30.43■■■□□ 2.46
LIME1-206ENST00000487026 SNCAIPQ9Y6H5 919 aa30.43■■■□□ 2.46
LIME1-206ENST00000487026 LAMB1P07942 1786 aa30.43■■■□□ 2.46
LIME1-206ENST00000487026 CCL15-CCL14A0A0B4J2E2 113 aa30.42■■■□□ 2.46
LIME1-206ENST00000487026 RASGRF1Q13972 1273 aa30.42■■■□□ 2.46
LIME1-206ENST00000487026 CCL15Q16663 113 aa30.42■■■□□ 2.46
LIME1-206ENST00000487026 FBXO46Q6PJ61 603 aaPredicted RBP30.42■■■□□ 2.46
LIME1-206ENST00000487026 TMEM57Q8N5G2 664 aa30.42■■■□□ 2.46
LIME1-206ENST00000487026 FAM151AQ8WW52 585 aa30.42■■■□□ 2.46
LIME1-206ENST00000487026 XAGE2Q96GT9 111 aa30.42■■■□□ 2.46
LIME1-206ENST00000487026 PNMA6EA0A0J9YXQ4 647 aa30.41■■■□□ 2.46
LIME1-206ENST00000487026 GTF2A2P52657 109 aa30.41■■■□□ 2.46
LIME1-206ENST00000487026 HOOK2Q96ED9 719 aa30.41■■■□□ 2.46
LIME1-206ENST00000487026 NEUROD6Q96NK8 337 aa30.41■■■□□ 2.46
LIME1-206ENST00000487026 AKAP2Q9Y2D5 859 aa30.41■■■□□ 2.46
LIME1-206ENST00000487026 ZKSCAN2Q63HK3 967 aa30.4■■■□□ 2.46
LIME1-206ENST00000487026 DCAF15Q66K64 600 aa30.4■■■□□ 2.46
LIME1-206ENST00000487026 ABCF2Q9UG63 623 aa30.4■■■□□ 2.46
LIME1-206ENST00000487026 SPDYE5A6NIY4 337 aa30.39■■■□□ 2.46
LIME1-206ENST00000487026 ZFPM1Q8IX07 1006 aa30.39■■■□□ 2.46
LIME1-206ENST00000487026 ZNF341Q9BYN7 854 aa30.39■■■□□ 2.46
LIME1-206ENST00000487026 FAM198AQ9UFP1 575 aa30.39■■■□□ 2.46
LIME1-206ENST00000487026 TRIM17Q9Y577 477 aa30.39■■■□□ 2.46
LIME1-206ENST00000487026 ERO1BQ86YB8 467 aa30.38■■■□□ 2.45
LIME1-206ENST00000487026 CD99L2Q8TCZ2 262 aa30.38■■■□□ 2.45
LIME1-206ENST00000487026 RPAP1Q9BWH6 1393 aaPredicted RBP30.38■■■□□ 2.45
LIME1-206ENST00000487026 INPP5BP32019 993 aa30.37■■■□□ 2.45
LIME1-206ENST00000487026 OTOP1Q7RTM1 612 aa30.37■■■□□ 2.45
LIME1-206ENST00000487026 FAM43AQ8N2R8 423 aa30.37■■■□□ 2.45
LIME1-206ENST00000487026 ZGPATQ8N5A5 531 aaKnown RBP30.37■■■□□ 2.45
LIME1-206ENST00000487026 ZBTB22O15209 634 aa30.36■■■□□ 2.45
LIME1-206ENST00000487026 G3BP1Q13283 466 aaKnown RBP eCLIP30.36■■■□□ 2.45
LIME1-206ENST00000487026 MVPQ14764 893 aaKnown RBP30.36■■■□□ 2.45
LIME1-206ENST00000487026 IRF6O14896 467 aa30.35■■■□□ 2.45
LIME1-206ENST00000487026 TAF1CQ15572 869 aaPredicted RBP30.35■■■□□ 2.45
LIME1-206ENST00000487026 DZIP1Q86YF9 867 aaKnown RBP30.35■■■□□ 2.45
LIME1-206ENST00000487026 ERO1AQ96HE7 468 aa30.35■■■□□ 2.45
LIME1-206ENST00000487026 CAP1Q01518 475 aa30.34■■■□□ 2.45
LIME1-206ENST00000487026 SP3Q02447 781 aa30.34■■■□□ 2.45
LIME1-206ENST00000487026 GORABQ5T7V8 394 aa30.34■■■□□ 2.45
LIME1-206ENST00000487026 AK9Q5TCS8 1911 aa30.34■■■□□ 2.45
LIME1-206ENST00000487026 ZFYVE28Q9HCC9 887 aa30.33■■■□□ 2.45
LIME1-206ENST00000487026 TNRC18O15417 2968 aaPredicted RBP30.33■■■□□ 2.45
LIME1-206ENST00000487026 MYH2Q9UKX2 1941 aa30.32■■■□□ 2.44
LIME1-206ENST00000487026 GAKO14976 1311 aa30.32■■■□□ 2.44
LIME1-206ENST00000487026 PDS5AQ29RF7 1337 aaKnown RBP30.32■■■□□ 2.44
LIME1-206ENST00000487026 CETPP11597 493 aa30.32■■■□□ 2.44
LIME1-206ENST00000487026 RGS3P49796 1198 aa30.32■■■□□ 2.44
LIME1-206ENST00000487026 PPIL2Q13356 520 aa30.32■■■□□ 2.44
LIME1-206ENST00000487026 SPTY2D1Q68D10 685 aaPredicted RBP30.32■■■□□ 2.44
LIME1-206ENST00000487026 PI16Q6UXB8 463 aa30.32■■■□□ 2.44
LIME1-206ENST00000487026 HMG20BQ9P0W2 317 aa30.32■■■□□ 2.44
LIME1-206ENST00000487026 ZNF112Q9UJU3 913 aa30.32■■■□□ 2.44
LIME1-206ENST00000487026 SNAPC2Q13487 334 aa30.31■■■□□ 2.44
LIME1-206ENST00000487026 C1orf115Q9H7X2 142 aa30.31■■■□□ 2.44
LIME1-206ENST00000487026 BTBD19C9JJ37 291 aa30.3■■■□□ 2.44
LIME1-206ENST00000487026 MECOMQ03112 1051 aa30.3■■■□□ 2.44
LIME1-206ENST00000487026 PPATQ06203 517 aa30.3■■■□□ 2.44
LIME1-206ENST00000487026 TBC1D9Q6ZT07 1266 aa30.3■■■□□ 2.44
LIME1-206ENST00000487026 ERICH6Q7L0X2 663 aa30.3■■■□□ 2.44
LIME1-206ENST00000487026 IDI2Q9BXS1 227 aa30.3■■■□□ 2.44
LIME1-206ENST00000487026 EFCC1Q9HA90 598 aa30.3■■■□□ 2.44
LIME1-206ENST00000487026 BTDP43251 543 aa30.29■■■□□ 2.44
LIME1-206ENST00000487026 SLF2Q8IX21 1173 aa30.29■■■□□ 2.44
LIME1-206ENST00000487026 GOLGA6L2Q8N9W4 650 aaPredicted RBP30.29■■■□□ 2.44
LIME1-206ENST00000487026 SPATA5Q8NB90 893 aa30.29■■■□□ 2.44
LIME1-206ENST00000487026 ZNF384Q8TF68 577 aa30.29■■■□□ 2.44
LIME1-206ENST00000487026 FAM163AQ96GL9 167 aaPredicted RBP30.29■■■□□ 2.44
LIME1-206ENST00000487026 PTPN22Q9Y2R2 807 aa30.29■■■□□ 2.44
LIME1-206ENST00000487026 RLBP1P12271 317 aa30.28■■■□□ 2.44
LIME1-206ENST00000487026 ATP8B2P98198 1209 aa30.28■■■□□ 2.44
LIME1-206ENST00000487026 POLA2Q14181 598 aa30.28■■■□□ 2.44
LIME1-206ENST00000487026 SH3BP5LQ7L8J4 393 aa30.28■■■□□ 2.44
LIME1-206ENST00000487026 FTSJ3Q8IY81 847 aaKnown RBP30.28■■■□□ 2.44
LIME1-206ENST00000487026 DDX4Q9NQI0 724 aaKnown RBP30.28■■■□□ 2.44
LIME1-206ENST00000487026 ENTPD3O75355 529 aa30.27■■■□□ 2.44
LIME1-206ENST00000487026 SLURP2P0DP57 97 aa30.27■■■□□ 2.44
LIME1-206ENST00000487026 PICALMQ13492 652 aa30.27■■■□□ 2.44
LIME1-206ENST00000487026 ZSCAN29Q8IWY8 852 aaPredicted RBP30.27■■■□□ 2.44
LIME1-206ENST00000487026 MROH7-TTC4A0A0A0MT08 1334 aa30.26■■■□□ 2.44
LIME1-206ENST00000487026 WDHD1O75717 1129 aaPredicted RBP30.26■■■□□ 2.43
LIME1-206ENST00000487026 ITPRIPQ8IWB1 547 aa30.26■■■□□ 2.43
LIME1-206ENST00000487026 DDTLA6NHG4 134 aaPredicted RBP30.25■■■□□ 2.43
LIME1-206ENST00000487026 ARID4AP29374 1257 aaPredicted RBP30.25■■■□□ 2.43
LIME1-206ENST00000487026 MCAMP43121 646 aa30.25■■■□□ 2.43
LIME1-206ENST00000487026 OS9Q13438 667 aaPredicted RBP30.25■■■□□ 2.43
LIME1-206ENST00000487026 SSH3Q8TE77 659 aa30.25■■■□□ 2.43
LIME1-206ENST00000487026 HTTP42858 3142 aa30.24■■■□□ 2.43
LIME1-206ENST00000487026 GPR75-ASB3A0A0A6YYF3 556 aa30.24■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 266.1 ms