RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 ZIC5Q96T25 663 aa19.09■□□□□ 0.65
HMGA1-206ENST00000478214 RAI14Q9P0K7 980 aa19.09■□□□□ 0.65
HMGA1-206ENST00000478214 ANGEL1Q9UNK9 670 aaKnown RBP19.09■□□□□ 0.65
HMGA1-206ENST00000478214 CYP2E1P05181 493 aaPredicted RBP19.08■□□□□ 0.64
HMGA1-206ENST00000478214 MAP2K2P36507 400 aa19.08■□□□□ 0.64
HMGA1-206ENST00000478214 SLF2Q8IX21 1173 aa19.08■□□□□ 0.64
HMGA1-206ENST00000478214 CCDC102AQ96A19 550 aa19.08■□□□□ 0.64
HMGA1-206ENST00000478214 NSUN4Q96CB9 384 aaKnown RBP19.08■□□□□ 0.64
HMGA1-206ENST00000478214 FAM163AQ96GL9 167 aaPredicted RBP19.08■□□□□ 0.64
HMGA1-206ENST00000478214 USP40Q9NVE5 1235 aa19.08■□□□□ 0.64
HMGA1-206ENST00000478214 WBP1LQ9NX94 342 aa19.08■□□□□ 0.64
HMGA1-206ENST00000478214 LRP2BPQ9P2M1 347 aa19.08■□□□□ 0.64
HMGA1-206ENST00000478214 MROH7-TTC4A0A0A0MT08 1334 aa19.07■□□□□ 0.64
HMGA1-206ENST00000478214 SLC10A3P09131 477 aa19.07■□□□□ 0.64
HMGA1-206ENST00000478214 IFIT2P09913 472 aaKnown RBP19.07■□□□□ 0.64
HMGA1-206ENST00000478214 NFIAQ12857 509 aa19.07■□□□□ 0.64
HMGA1-206ENST00000478214 NOGQ13253 232 aa19.07■□□□□ 0.64
HMGA1-206ENST00000478214 LDLRAD1Q5T700 205 aa19.07■□□□□ 0.64
HMGA1-206ENST00000478214 FAM83AQ86UY5 434 aa19.07■□□□□ 0.64
HMGA1-206ENST00000478214 RASAL3Q86YV0 1011 aa19.07■□□□□ 0.64
HMGA1-206ENST00000478214 NDUFB9Q9Y6M9 179 aa19.07■□□□□ 0.64
HMGA1-206ENST00000478214 PPP1R12BO60237 982 aaPredicted RBP19.06■□□□□ 0.64
HMGA1-206ENST00000478214 BTDP43251 543 aa19.06■□□□□ 0.64
HMGA1-206ENST00000478214 MAP2K1Q02750 393 aaPredicted RBP19.06■□□□□ 0.64
HMGA1-206ENST00000478214 DCTPP1Q9H773 170 aa19.06■□□□□ 0.64
HMGA1-206ENST00000478214 PIH1D3Q9NQM4 214 aaKnown RBP19.06■□□□□ 0.64
HMGA1-206ENST00000478214 THSD7BQ9C0I4 1608 aa19.05■□□□□ 0.64
HMGA1-206ENST00000478214 SMARCA5O60264 1052 aaPredicted RBP19.05■□□□□ 0.64
HMGA1-206ENST00000478214 USP2O75604 605 aaPredicted RBP19.05■□□□□ 0.64
HMGA1-206ENST00000478214 GSTO1P78417 241 aa19.05■□□□□ 0.64
HMGA1-206ENST00000478214 MAP3K11Q16584 847 aa19.05■□□□□ 0.64
HMGA1-206ENST00000478214 LRRCC1Q9C099 1032 aa19.05■□□□□ 0.64
HMGA1-206ENST00000478214 GPR75-ASB3A0A0A6YYF3 556 aa19.04■□□□□ 0.64
HMGA1-206ENST00000478214 FOXN1O15353 648 aa19.04■□□□□ 0.64
HMGA1-206ENST00000478214 LDHCP07864 332 aa19.04■□□□□ 0.64
HMGA1-206ENST00000478214 TCP10Q12799 353 aa19.04■□□□□ 0.64
HMGA1-206ENST00000478214 FAM151AQ8WW52 585 aa19.04■□□□□ 0.64
HMGA1-206ENST00000478214 FAM198AQ9UFP1 575 aa19.04■□□□□ 0.64
HMGA1-206ENST00000478214 SUPT16HQ9Y5B9 1047 aaKnown RBP19.04■□□□□ 0.64
HMGA1-206ENST00000478214 AKAP11Q9UKA4 1901 aa19.04■□□□□ 0.64
HMGA1-206ENST00000478214 KIF23Q02241 960 aaPredicted RBP19.03■□□□□ 0.64
HMGA1-206ENST00000478214 ZFPM1Q8IX07 1006 aa19.03■□□□□ 0.64
HMGA1-206ENST00000478214 AIDAQ96BJ3 306 aa19.03■□□□□ 0.64
HMGA1-206ENST00000478214 CLMNQ96JQ2 1002 aa19.03■□□□□ 0.64
HMGA1-206ENST00000478214 ANTXR1Q9H6X2 564 aa19.03■□□□□ 0.64
HMGA1-206ENST00000478214 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.03■□□□□ 0.64
HMGA1-206ENST00000478214 MYH2Q9UKX2 1941 aa19.02■□□□□ 0.64
HMGA1-206ENST00000478214 WDHD1O75717 1129 aaPredicted RBP19.02■□□□□ 0.64
HMGA1-206ENST00000478214 IREB2P48200 963 aaKnown RBP19.02■□□□□ 0.64
HMGA1-206ENST00000478214 RGS3P49796 1198 aa19.02■□□□□ 0.64
HMGA1-206ENST00000478214 RHBDL3P58872 404 aa19.02■□□□□ 0.64
HMGA1-206ENST00000478214 NAA16Q6N069 864 aaPredicted RBP19.02■□□□□ 0.64
HMGA1-206ENST00000478214 IDI2Q9BXS1 227 aa19.02■□□□□ 0.64
HMGA1-206ENST00000478214 IDH1O75874 414 aaKnown RBP19.01■□□□□ 0.63
HMGA1-206ENST00000478214 SLC10A4Q96EP9 437 aa19.01■□□□□ 0.63
HMGA1-206ENST00000478214 DDX4Q9NQI0 724 aaKnown RBP19.01■□□□□ 0.63
HMGA1-206ENST00000478214 RFX7Q2KHR2 1363 aa19.01■□□□□ 0.63
HMGA1-206ENST00000478214 RPAP1Q9BWH6 1393 aaPredicted RBP19.01■□□□□ 0.63
HMGA1-206ENST00000478214 MKRN3Q13064 507 aaKnown RBP19■□□□□ 0.63
HMGA1-206ENST00000478214 PICALMQ13492 652 aa19■□□□□ 0.63
HMGA1-206ENST00000478214 ADGRA1Q86SQ6 560 aa19■□□□□ 0.63
HMGA1-206ENST00000478214 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19■□□□□ 0.63
HMGA1-206ENST00000478214 BEGAINQ9BUH8 593 aa19■□□□□ 0.63
HMGA1-206ENST00000478214 UNCXA6NJT0 531 aa18.99■□□□□ 0.63
HMGA1-206ENST00000478214 ENTPD3O75355 529 aa18.99■□□□□ 0.63
HMGA1-206ENST00000478214 ANKRD13AQ8IZ07 590 aa18.99■□□□□ 0.63
HMGA1-206ENST00000478214 EXOC6Q8TAG9 804 aa18.99■□□□□ 0.63
HMGA1-206ENST00000478214 CSRNP1Q96S65 589 aa18.99■□□□□ 0.63
HMGA1-206ENST00000478214 DNAJC2Q99543 621 aaKnown RBP18.99■□□□□ 0.63
HMGA1-206ENST00000478214 BOLA2Q9H3K6 86 aa18.99■□□□□ 0.63
HMGA1-206ENST00000478214 GOLIM4O00461 696 aa18.98■□□□□ 0.63
HMGA1-206ENST00000478214 IGSF3O75054 1194 aa18.98■□□□□ 0.63
HMGA1-206ENST00000478214 ATP5JP18859 108 aa18.98■□□□□ 0.63
HMGA1-206ENST00000478214 CYP7A1P22680 504 aa18.98■□□□□ 0.63
HMGA1-206ENST00000478214 CTCFP49711 727 aaPredicted RBP18.98■□□□□ 0.63
HMGA1-206ENST00000478214 MAP3K9P80192 1104 aa18.98■□□□□ 0.63
HMGA1-206ENST00000478214 SPRYD7Q5W111 196 aa18.98■□□□□ 0.63
HMGA1-206ENST00000478214 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.98■□□□□ 0.63
HMGA1-206ENST00000478214 MIGA2Q7L4E1 593 aa18.98■□□□□ 0.63
HMGA1-206ENST00000478214 SH3BP5LQ7L8J4 393 aa18.98■□□□□ 0.63
HMGA1-206ENST00000478214 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.98■□□□□ 0.63
HMGA1-206ENST00000478214 SH3RF3Q8TEJ3 882 aaPredicted RBP18.98■□□□□ 0.63
HMGA1-206ENST00000478214 HOOK2Q96ED9 719 aa18.98■□□□□ 0.63
HMGA1-206ENST00000478214 EDC3Q96F86 508 aaKnown RBP18.98■□□□□ 0.63
HMGA1-206ENST00000478214 NOL10Q9BSC4 688 aaKnown RBP18.98■□□□□ 0.63
HMGA1-206ENST00000478214 AATFQ9NY61 560 aaKnown RBP eCLIP18.98■□□□□ 0.635e-10■□□□□ 8.3
HMGA1-206ENST00000478214 BAG3O95817 575 aa18.97■□□□□ 0.63
HMGA1-206ENST00000478214 MAP4K4O95819 1239 aaPredicted RBP18.97■□□□□ 0.63
HMGA1-206ENST00000478214 PPP4CP60510 307 aa18.97■□□□□ 0.63
HMGA1-206ENST00000478214 MAP3K12Q12852 859 aa18.97■□□□□ 0.63
HMGA1-206ENST00000478214 DCAF15Q66K64 600 aa18.97■□□□□ 0.63
HMGA1-206ENST00000478214 TEX11Q8IYF3 940 aa18.97■□□□□ 0.63
HMGA1-206ENST00000478214 MAGEB6Q8N7X4 407 aa18.97■□□□□ 0.63
HMGA1-206ENST00000478214 ELP3Q9H9T3 547 aa18.97■□□□□ 0.63
HMGA1-206ENST00000478214 TSKSQ9UJT2 592 aa18.97■□□□□ 0.63
HMGA1-206ENST00000478214 HSPA8P11142 646 aaKnown RBP18.96■□□□□ 0.63
HMGA1-206ENST00000478214 AAMPQ13685 434 aa18.96■□□□□ 0.63
HMGA1-206ENST00000478214 VGLL4Q14135 290 aa18.96■□□□□ 0.63
HMGA1-206ENST00000478214 TTF1Q15361 905 aaPredicted RBP18.96■□□□□ 0.63
HMGA1-206ENST00000478214 ZSCAN29Q8IWY8 852 aaPredicted RBP18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms