RNA–Protein interactions for RNA: ENST00000477334.1

RBM39-231, Transcript of RNA binding motif protein 39, human

TSL 2

Gene RBM39, Length 949 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-231	ENST00000477334	IGLV1-40	P01703	118 aa		7.11	□□□□□ -1.27
RBM39-231	ENST00000477334	DDX54	Q8TDD1	881 aa	Known RBP	7.11	□□□□□ -1.27
RBM39-231	ENST00000477334	MYRFL	Q96LU7	910 aa		7.11	□□□□□ -1.27
RBM39-231	ENST00000477334	KRTAP4-12	Q9BQ66	201 aa		7.11	□□□□□ -1.27
RBM39-231	ENST00000477334	SOX17	Q9H6I2	414 aa	Predicted RBP	7.11	□□□□□ -1.27
RBM39-231	ENST00000477334	PAGE1	O75459	146 aa		7.1	□□□□□ -1.27
RBM39-231	ENST00000477334	ST13	P50502	369 aa	Known RBP	7.1	□□□□□ -1.27
RBM39-231	ENST00000477334	ANKRD34A	Q69YU3	496 aa		7.1	□□□□□ -1.27
RBM39-231	ENST00000477334	NPM2	Q86SE8	214 aa	Known RBP	7.1	□□□□□ -1.27
RBM39-231	ENST00000477334	ANKRD24	Q8TF21	1146 aa		7.1	□□□□□ -1.27
RBM39-231	ENST00000477334	TRIM56	Q9BRZ2	755 aa	Known RBP	7.1	□□□□□ -1.27
RBM39-231	ENST00000477334	USP26	Q9BXU7	913 aa		7.1	□□□□□ -1.27
RBM39-231	ENST00000477334	KRTAP9-9	Q9BYP9	154 aa		7.1	□□□□□ -1.27
RBM39-231	ENST00000477334	KRTAP9-4	Q9BYQ2	154 aa		7.1	□□□□□ -1.27
RBM39-231	ENST00000477334	RNF208	Q9H0X6	261 aa		7.1	□□□□□ -1.27
RBM39-231	ENST00000477334	MAP3K11	Q16584	847 aa		7.09	□□□□□ -1.27
RBM39-231	ENST00000477334	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	7.09	□□□□□ -1.27
RBM39-231	ENST00000477334	SV2B	Q7L1I2	683 aa		7.09	□□□□□ -1.27
RBM39-231	ENST00000477334	STK35	Q8TDR2	534 aa		7.09	□□□□□ -1.27
RBM39-231	ENST00000477334	RUSC1	Q9BVN2	902 aa		7.09	□□□□□ -1.27
RBM39-231	ENST00000477334	C7orf69	Q9H7B7	122 aa		7.09	□□□□□ -1.27
RBM39-231	ENST00000477334		F6X3S4	739 aa		7.08	□□□□□ -1.28
RBM39-231	ENST00000477334	ECEL1	O95672	775 aa		7.08	□□□□□ -1.28
RBM39-231	ENST00000477334	CYP11A1	P05108	521 aa		7.08	□□□□□ -1.28
RBM39-231	ENST00000477334	MAOB	P27338	520 aa		7.08	□□□□□ -1.28
RBM39-231	ENST00000477334	CD97	P48960	835 aa		7.08	□□□□□ -1.28
RBM39-231	ENST00000477334	NFIA	Q12857	509 aa		7.08	□□□□□ -1.28
RBM39-231	ENST00000477334	POU4F3	Q15319	338 aa		7.08	□□□□□ -1.28
RBM39-231	ENST00000477334	SULF2	Q8IWU5	870 aa		7.08	□□□□□ -1.28
RBM39-231	ENST00000477334	ZC3H12C	Q9C0D7	883 aa	Known RBP	7.08	□□□□□ -1.28
RBM39-231	ENST00000477334	NRSN2	Q9GZP1	204 aa		7.08	□□□□□ -1.28
RBM39-231	ENST00000477334	CBX8	Q9HC52	389 aa		7.08	□□□□□ -1.28
RBM39-231	ENST00000477334	MEGF11	A6BM72	1044 aa		7.07	□□□□□ -1.28
RBM39-231	ENST00000477334	SCAMP3	O14828	347 aa	Known RBP	7.07	□□□□□ -1.28
RBM39-231	ENST00000477334	SART1	O43290	800 aa	Known RBP	7.07	□□□□□ -1.28
RBM39-231	ENST00000477334	CTSB	P07858	339 aa		7.07	□□□□□ -1.28
RBM39-231	ENST00000477334	NME2	P22392	152 aa		7.07	□□□□□ -1.28
RBM39-231	ENST00000477334	ZNF76	P36508	570 aa		7.07	□□□□□ -1.28
RBM39-231	ENST00000477334	PREP	P48147	710 aa		7.07	□□□□□ -1.28
RBM39-231	ENST00000477334	FANCC	Q00597	558 aa		7.07	□□□□□ -1.28
RBM39-231	ENST00000477334	AP3B2	Q13367	1082 aa		7.07	□□□□□ -1.28
RBM39-231	ENST00000477334	PCNX4	Q63HM2	1172 aa		7.07	□□□□□ -1.28
RBM39-231	ENST00000477334	FDX2	Q6P4F2	183 aa		7.07	□□□□□ -1.28
RBM39-231	ENST00000477334	TRIM42	Q8IWZ5	723 aa		7.07	□□□□□ -1.28
RBM39-231	ENST00000477334	FAM20C	Q8IXL6	584 aa		7.07	□□□□□ -1.28
RBM39-231	ENST00000477334	CORO1B	Q9BR76	489 aa		7.07	□□□□□ -1.28
RBM39-231	ENST00000477334	NOC4L	Q9BVI4	516 aa	Known RBP	7.07	□□□□□ -1.28
RBM39-231	ENST00000477334	PCMTD2	Q9NV79	361 aa		7.07	□□□□□ -1.28
RBM39-231	ENST00000477334	LOC100289279	A0A1B0GTE1	492 aa		7.06	□□□□□ -1.28
RBM39-231	ENST00000477334	HMX2	A2RU54	273 aa		7.06	□□□□□ -1.28
RBM39-231	ENST00000477334	DLGAP3	O95886	979 aa		7.06	□□□□□ -1.28
RBM39-231	ENST00000477334	TGFB1	P01137	390 aa		7.06	□□□□□ -1.28
RBM39-231	ENST00000477334	BMP3	P12645	472 aa		7.06	□□□□□ -1.28
RBM39-231	ENST00000477334	SSTR4	P31391	388 aa		7.06	□□□□□ -1.28
RBM39-231	ENST00000477334	C9orf131	Q5VYM1	1079 aa		7.06	□□□□□ -1.28
RBM39-231	ENST00000477334	RNF43	Q68DV7	783 aa		7.06	□□□□□ -1.28
RBM39-231	ENST00000477334	TTBK2	Q6IQ55	1244 aa		7.06	□□□□□ -1.28
RBM39-231	ENST00000477334	ZDHHC13	Q8IUH4	622 aa		7.06	□□□□□ -1.28
RBM39-231	ENST00000477334	CLEC10A	Q8IUN9	316 aa		7.06	□□□□□ -1.28
RBM39-231	ENST00000477334	GGT7	Q9UJ14	662 aa		7.06	□□□□□ -1.28
RBM39-231	ENST00000477334	HIF3A	Q9Y2N7	669 aa		7.06	□□□□□ -1.28
RBM39-231	ENST00000477334	SAMM50	Q9Y512	469 aa		7.06	□□□□□ -1.28
RBM39-231	ENST00000477334	EIF4EBP3	O60516	100 aa	Predicted RBP	7.05	□□□□□ -1.28
RBM39-231	ENST00000477334	GSTP1	P09211	210 aa	Known RBP	7.05	□□□□□ -1.28
RBM39-231	ENST00000477334	BMP6	P22004	513 aa		7.05	□□□□□ -1.28
RBM39-231	ENST00000477334	ARNT	P27540	789 aa		7.05	□□□□□ -1.28
RBM39-231	ENST00000477334	RASIP1	Q5U651	963 aa		7.05	□□□□□ -1.28
RBM39-231	ENST00000477334	BEND4	Q6ZU67	534 aa		7.05	□□□□□ -1.28
RBM39-231	ENST00000477334	HS2ST1	Q7LGA3	356 aa		7.05	□□□□□ -1.28
RBM39-231	ENST00000477334	GRIN3A	Q8TCU5	1115 aa		7.05	□□□□□ -1.28
RBM39-231	ENST00000477334	KCNB2	Q92953	911 aa		7.05	□□□□□ -1.28
RBM39-231	ENST00000477334	RNF34	Q969K3	372 aa		7.05	□□□□□ -1.28
RBM39-231	ENST00000477334	FAM83C	Q9BQN1	747 aa		7.05	□□□□□ -1.28
RBM39-231	ENST00000477334	DBNDD2	Q9BQY9	259 aa		7.05	□□□□□ -1.28
RBM39-231	ENST00000477334	TMPRSS13	Q9BYE2	586 aa		7.05	□□□□□ -1.28
RBM39-231	ENST00000477334	KCNF1	Q9H3M0	494 aa		7.05	□□□□□ -1.28
RBM39-231	ENST00000477334	LIG3	P49916	1009 aa		7.04	□□□□□ -1.28
RBM39-231	ENST00000477334	HDLBP	Q00341	1268 aa	Known RBP	7.04	□□□□□ -1.28
RBM39-231	ENST00000477334	PDE3A	Q14432	1141 aa		7.04	□□□□□ -1.28
RBM39-231	ENST00000477334	NUTM2G	Q5VZR2	741 aa		7.04	□□□□□ -1.28
RBM39-231	ENST00000477334	MAP1S	Q66K74	1059 aa	Predicted RBP	7.04	□□□□□ -1.28
RBM39-231	ENST00000477334	MPRIP	Q6WCQ1	1025 aa		7.04	□□□□□ -1.28
RBM39-231	ENST00000477334	PDZD3	Q86UT5	571 aa		7.04	□□□□□ -1.28
RBM39-231	ENST00000477334	EMILIN2	Q9BXX0	1053 aa		7.04	□□□□□ -1.28
RBM39-231	ENST00000477334	COPRS	Q9NQ92	184 aa		7.04	□□□□□ -1.28
RBM39-231	ENST00000477334	METTL5	Q9NRN9	209 aa	Known RBP	7.04	□□□□□ -1.28
RBM39-231	ENST00000477334	KBTBD4	Q9NVX7	518 aa		7.04	□□□□□ -1.28
RBM39-231	ENST00000477334	TLR6	Q9Y2C9	796 aa		7.04	□□□□□ -1.28
RBM39-231	ENST00000477334	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	7.03	□□□□□ -1.28
RBM39-231	ENST00000477334	MINDY4B	A8MYZ0	360 aa		7.03	□□□□□ -1.28
RBM39-231	ENST00000477334	GAS2	O43903	313 aa	Known RBP	7.03	□□□□□ -1.28
RBM39-231	ENST00000477334	COBL	O75128	1261 aa		7.03	□□□□□ -1.28
RBM39-231	ENST00000477334	RLBP1	P12271	317 aa		7.03	□□□□□ -1.28
RBM39-231	ENST00000477334	TCF3	P15923	654 aa		7.03	□□□□□ -1.28
RBM39-231	ENST00000477334	GBP2	P32456	591 aa	Predicted RBP	7.03	□□□□□ -1.28
RBM39-231	ENST00000477334	ZNF252P-AS1	Q0IIN9	211 aa		7.03	□□□□□ -1.28
RBM39-231	ENST00000477334	LLGL2	Q6P1M3	1020 aa		7.03	□□□□□ -1.28
RBM39-231	ENST00000477334	RELL1	Q8IUW5	271 aa		7.03	□□□□□ -1.28
RBM39-231	ENST00000477334	RSRP1	Q9BUV0	290 aa		7.03	□□□□□ -1.28
RBM39-231	ENST00000477334	CCDC86	Q9H6F5	360 aa	Known RBP	7.03	□□□□□ -1.28

Retrieved 100 of 20,778 RNA–protein pairs in 249.4 ms