RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 CD209Q9NNX6 404 aa10.45□□□□□ -0.74
USP54-211ENST00000474929 TIMELESSQ9UNS1 1208 aa10.45□□□□□ -0.74
USP54-211ENST00000474929 SPEF2Q9C093 1822 aa10.44□□□□□ -0.74
USP54-211ENST00000474929 F8W031 263 aaPredicted RBP10.44□□□□□ -0.74
USP54-211ENST00000474929 CXCL11O14625 94 aa10.44□□□□□ -0.74
USP54-211ENST00000474929 CTSWP56202 376 aa10.44□□□□□ -0.74
USP54-211ENST00000474929 FAM110CQ1W6H9 321 aa10.44□□□□□ -0.74
USP54-211ENST00000474929 CC2D1BQ5T0F9 858 aaKnown RBP10.44□□□□□ -0.74
USP54-211ENST00000474929 CERS5Q8N5B7 392 aa10.44□□□□□ -0.74
USP54-211ENST00000474929 CCDC191Q8NCU4 936 aa10.44□□□□□ -0.74
USP54-211ENST00000474929 TMEM39BQ9GZU3 492 aa10.44□□□□□ -0.74
USP54-211ENST00000474929 KCNH6Q9H252 994 aa10.44□□□□□ -0.74
USP54-211ENST00000474929 PNMA3Q9UL41 463 aa10.44□□□□□ -0.74
USP54-211ENST00000474929 MYH3P11055 1940 aa10.44□□□□□ -0.74
USP54-211ENST00000474929 TCP10L2B9ZVM9 353 aa10.43□□□□□ -0.74
USP54-211ENST00000474929 GPR37L1O60883 481 aa10.43□□□□□ -0.74
USP54-211ENST00000474929 HOXB7P09629 217 aa10.43□□□□□ -0.74
USP54-211ENST00000474929 CYP2C8P10632 490 aa10.43□□□□□ -0.74
USP54-211ENST00000474929 GOLGA2Q08379 1002 aa10.43□□□□□ -0.74
USP54-211ENST00000474929 SHHQ15465 462 aa10.43□□□□□ -0.74
USP54-211ENST00000474929 C15orf52Q6ZUT6 534 aaKnown RBP10.43□□□□□ -0.74
USP54-211ENST00000474929 TXNRD3Q86VQ6 643 aa10.43□□□□□ -0.74
USP54-211ENST00000474929 ZKSCAN4Q969J2 545 aaPredicted RBP10.43□□□□□ -0.74
USP54-211ENST00000474929 HYPKQ9NX55 129 aa10.43□□□□□ -0.74
USP54-211ENST00000474929 DBF4Q9UBU7 674 aaPredicted RBP10.43□□□□□ -0.74
USP54-211ENST00000474929 IL1R1P14778 569 aa10.42□□□□□ -0.74
USP54-211ENST00000474929 MAPK8IP2Q13387 824 aaPredicted RBP10.42□□□□□ -0.74
USP54-211ENST00000474929 NOL9Q5SY16 702 aaKnown RBP10.42□□□□□ -0.74
USP54-211ENST00000474929 FAM83AQ86UY5 434 aa10.42□□□□□ -0.74
USP54-211ENST00000474929 TDRD3Q9H7E2 651 aaKnown RBP10.42□□□□□ -0.74
USP54-211ENST00000474929 CXXC1Q9P0U4 656 aaPredicted RBP10.42□□□□□ -0.74
USP54-211ENST00000474929 PCDHAC2Q9Y5I4 1007 aa10.42□□□□□ -0.74
USP54-211ENST00000474929 DNAJB2P25686 324 aa10.41□□□□□ -0.74
USP54-211ENST00000474929 GRIN2CQ14957 1233 aa10.41□□□□□ -0.74
USP54-211ENST00000474929 MAP3K21Q5TCX8 1036 aa10.41□□□□□ -0.74
USP54-211ENST00000474929 FKBP1CQ5VVH2 108 aa10.41□□□□□ -0.74
USP54-211ENST00000474929 DZIP1LQ8IYY4 767 aaKnown RBP10.41□□□□□ -0.74
USP54-211ENST00000474929 SOCS4Q8WXH5 440 aa10.41□□□□□ -0.74
USP54-211ENST00000474929 RNPC3Q96LT9 517 aaKnown RBP10.41□□□□□ -0.74
USP54-211ENST00000474929 CCDC85AQ96PX6 553 aaPredicted RBP10.41□□□□□ -0.74
USP54-211ENST00000474929 MPHOSPH8Q99549 860 aa10.41□□□□□ -0.74
USP54-211ENST00000474929 PNNQ9H307 717 aaKnown RBP10.41□□□□□ -0.74
USP54-211ENST00000474929 ZNF576Q9H609 170 aa10.41□□□□□ -0.74
USP54-211ENST00000474929 CWC25Q9NXE8 425 aaPredicted RBP10.41□□□□□ -0.74
USP54-211ENST00000474929 CHPF2Q9P2E5 772 aa10.41□□□□□ -0.74
USP54-211ENST00000474929 MSCO60682 206 aa10.4□□□□□ -0.74
USP54-211ENST00000474929 PRKAR2AP13861 404 aaKnown RBP10.4□□□□□ -0.74
USP54-211ENST00000474929 MOGSQ13724 837 aa10.4□□□□□ -0.74
USP54-211ENST00000474929 NFE2L2Q16236 605 aa10.4□□□□□ -0.74
USP54-211ENST00000474929 HDGFL1Q5TGJ6 251 aa10.4□□□□□ -0.74
USP54-211ENST00000474929 CDAN1Q8IWY9 1227 aa10.4□□□□□ -0.74
USP54-211ENST00000474929 ZNF428Q96B54 188 aa10.4□□□□□ -0.74
USP54-211ENST00000474929 TTF2Q9UNY4 1162 aaKnown RBP10.4□□□□□ -0.74
USP54-211ENST00000474929 MYBBP1AQ9BQG0 1328 aaKnown RBP10.39□□□□□ -0.75
USP54-211ENST00000474929 MAPK8IP3Q9UPT6 1336 aa10.39□□□□□ -0.75
USP54-211ENST00000474929 A0A0G2JLL6 359 aaPredicted RBP10.39□□□□□ -0.75
USP54-211ENST00000474929 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.39□□□□□ -0.75
USP54-211ENST00000474929 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.39□□□□□ -0.75
USP54-211ENST00000474929 XRCC5P13010 732 aaKnown RBP10.39□□□□□ -0.75
USP54-211ENST00000474929 GCLCP48506 637 aaPredicted RBP10.39□□□□□ -0.75
USP54-211ENST00000474929 LMOD3Q0VAK6 560 aa10.39□□□□□ -0.75
USP54-211ENST00000474929 C9orf50Q5SZB4 431 aa10.39□□□□□ -0.75
USP54-211ENST00000474929 GPAT2Q6NUI2 795 aa10.39□□□□□ -0.75
USP54-211ENST00000474929 PRRT2Q7Z6L0 340 aaPredicted RBP10.39□□□□□ -0.75
USP54-211ENST00000474929 AOX1Q06278 1338 aa10.38□□□□□ -0.75
USP54-211ENST00000474929 HSPA5P11021 654 aaKnown RBP10.38□□□□□ -0.75
USP54-211ENST00000474929 KLRK1P26718 216 aa10.38□□□□□ -0.75
USP54-211ENST00000474929 CRKP46108 304 aa10.38□□□□□ -0.75
USP54-211ENST00000474929 HDLBPQ00341 1268 aaKnown RBP10.38□□□□□ -0.75
USP54-211ENST00000474929 PDE3AQ14432 1141 aa10.38□□□□□ -0.75
USP54-211ENST00000474929 MFSD14BQ5SR56 506 aa10.38□□□□□ -0.75
USP54-211ENST00000474929 PPM1EQ8WY54 764 aa10.38□□□□□ -0.75
USP54-211ENST00000474929 TIFAQ96CG3 184 aa10.38□□□□□ -0.75
USP54-211ENST00000474929 MAST3O60307 1309 aa10.37□□□□□ -0.75
USP54-211ENST00000474929 PRR33A8MZF0 331 aa10.37□□□□□ -0.75
USP54-211ENST00000474929 PER1O15534 1290 aaPredicted RBP10.37□□□□□ -0.75
USP54-211ENST00000474929 ZKSCAN1P17029 563 aaPredicted RBP10.37□□□□□ -0.75
USP54-211ENST00000474929 RTP1P59025 263 aa10.37□□□□□ -0.75
USP54-211ENST00000474929 PABPC4Q13310 644 aaKnown RBP eCLIP10.37□□□□□ -0.75
USP54-211ENST00000474929 POTEEQ6S8J3 1075 aa10.37□□□□□ -0.75
USP54-211ENST00000474929 ANKRD13CQ8N6S4 541 aa10.37□□□□□ -0.75
USP54-211ENST00000474929 TTLL11Q8NHH1 800 aa10.37□□□□□ -0.75
USP54-211ENST00000474929 TRIB2Q92519 343 aa10.37□□□□□ -0.75
USP54-211ENST00000474929 SENP6Q9GZR1 1112 aaPredicted RBP10.37□□□□□ -0.75
USP54-211ENST00000474929 GREM2Q9H772 168 aa10.37□□□□□ -0.75
USP54-211ENST00000474929 PICK1Q9NRD5 415 aa10.37□□□□□ -0.75
USP54-211ENST00000474929 ZNF112Q9UJU3 913 aa10.37□□□□□ -0.75
USP54-211ENST00000474929 FRMPD3Q5JV73 1810 aa10.37□□□□□ -0.75
USP54-211ENST00000474929 DOCK3Q8IZD9 2030 aa10.36□□□□□ -0.75
USP54-211ENST00000474929 DNM1LO00429 736 aa10.36□□□□□ -0.75
USP54-211ENST00000474929 BMP1P13497 986 aa10.36□□□□□ -0.75
USP54-211ENST00000474929 INPP5BP32019 993 aa10.36□□□□□ -0.75
USP54-211ENST00000474929 CCDC174Q6PII3 467 aa10.36□□□□□ -0.75
USP54-211ENST00000474929 GADL1Q6ZQY3 521 aa10.36□□□□□ -0.75
USP54-211ENST00000474929 TEKT1Q969V4 418 aa10.36□□□□□ -0.75
USP54-211ENST00000474929 NUDT12Q9BQG2 462 aa10.36□□□□□ -0.75
USP54-211ENST00000474929 PRDM5Q9NQX1 630 aaPredicted RBP10.36□□□□□ -0.75
USP54-211ENST00000474929 AGTPBP1Q9UPW5 1226 aa10.36□□□□□ -0.75
USP54-211ENST00000474929 SMIM22K7EJ46 135 aa10.35□□□□□ -0.75
USP54-211ENST00000474929 ST18O60284 1047 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms