RNA–Protein interactions for RNA: ENST00000469356.3

SREBF1-208, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 3

Gene SREBF1, Length 1,323 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-208	ENST00000469356	HIRA	P54198	1017 aa	Predicted RBP	27.67	■■■□□ 2.02
SREBF1-208	ENST00000469356	APOBEC3H	Q6NTF7	200 aa	Known RBP	27.67	■■■□□ 2.02
SREBF1-208	ENST00000469356	APOBEC3F	Q8IUX4	373 aa	Known RBP	27.67	■■■□□ 2.02
SREBF1-208	ENST00000469356	EGFR	P00533	1210 aa		27.67	■■■□□ 2.02
SREBF1-208	ENST00000469356	PPP4C	P60510	307 aa		27.67	■■■□□ 2.02
SREBF1-208	ENST00000469356	TNFAIP1	Q13829	316 aa		27.67	■■■□□ 2.02
SREBF1-208	ENST00000469356	BMP2KL	Q5H9B9	411 aa		27.67	■■■□□ 2.02
SREBF1-208	ENST00000469356	ZNF384	Q8TF68	577 aa		27.67	■■■□□ 2.02
SREBF1-208	ENST00000469356	APPBP2	Q92624	585 aa		27.67	■■■□□ 2.02
SREBF1-208	ENST00000469356	TDRD3	Q9H7E2	651 aa	Known RBP	27.67	■■■□□ 2.02
SREBF1-208	ENST00000469356	USP40	Q9NVE5	1235 aa		27.67	■■■□□ 2.02
SREBF1-208	ENST00000469356	PGAP2	Q9UHJ9	254 aa		27.67	■■■□□ 2.02
SREBF1-208	ENST00000469356	KIF3C	O14782	793 aa		27.66	■■■□□ 2.02
SREBF1-208	ENST00000469356	GSPT1	P15170	499 aa	Known RBP	27.66	■■■□□ 2.02
SREBF1-208	ENST00000469356	SDS	P20132	328 aa		27.66	■■■□□ 2.02
SREBF1-208	ENST00000469356	TNNI2	P48788	182 aa		27.66	■■■□□ 2.02
SREBF1-208	ENST00000469356	SPDYE2	Q495Y8	402 aa		27.66	■■■□□ 2.02
SREBF1-208	ENST00000469356	MAGEB6P1	A0A0J9YX57	407 aa		27.65	■■■□□ 2.02
SREBF1-208	ENST00000469356	TCRBV5S4A2T	A0A5A2	114 aa		27.65	■■■□□ 2.02
SREBF1-208	ENST00000469356	VEZT	Q9HBM0	779 aa		27.65	■■■□□ 2.02
SREBF1-208	ENST00000469356	AATF	Q9NY61	560 aa	Known RBP eCLIP	27.65	■■■□□ 2.02
SREBF1-208	ENST00000469356	GGA3	Q9NZ52	723 aa		27.65	■■■□□ 2.02
SREBF1-208	ENST00000469356	ZNF70	Q9UC06	446 aa	Predicted RBP	27.65	■■■□□ 2.02
SREBF1-208	ENST00000469356	TOMM70	O94826	608 aa		27.64	■■■□□ 2.01
SREBF1-208	ENST00000469356	ANGEL2	Q5VTE6	544 aa	Known RBP	27.64	■■■□□ 2.01
SREBF1-208	ENST00000469356	FKBP1C	Q5VVH2	108 aa		27.64	■■■□□ 2.01
SREBF1-208	ENST00000469356	SULF1	Q8IWU6	871 aa		27.64	■■■□□ 2.01
SREBF1-208	ENST00000469356	AIDA	Q96BJ3	306 aa		27.64	■■■□□ 2.01
SREBF1-208	ENST00000469356	DIAPH3	Q9NSV4	1193 aa		27.64	■■■□□ 2.01
SREBF1-208	ENST00000469356	PCDHAC2	Q9Y5I4	1007 aa		27.64	■■■□□ 2.01
SREBF1-208	ENST00000469356	CHADL	Q6NUI6	762 aa		27.63	■■■□□ 2.01
SREBF1-208	ENST00000469356	CDC42EP5	Q6NZY7	148 aa		27.63	■■■□□ 2.01
SREBF1-208	ENST00000469356	CLRN2	A0PK11	232 aa		27.62	■■■□□ 2.01
SREBF1-208	ENST00000469356	CDC37L1	Q7L3B6	337 aa		27.62	■■■□□ 2.01
SREBF1-208	ENST00000469356	SKAP1	Q86WV1	359 aa		27.62	■■■□□ 2.01
SREBF1-208	ENST00000469356	TEX11	Q8IYF3	940 aa		27.62	■■■□□ 2.01
SREBF1-208	ENST00000469356	MIGA1	Q8NAN2	632 aa		27.62	■■■□□ 2.01
SREBF1-208	ENST00000469356	HELLS	Q9NRZ9	838 aa		27.62	■■■□□ 2.01
SREBF1-208	ENST00000469356	ADAMTSL1	Q8N6G6	1762 aa		27.61	■■■□□ 2.01
SREBF1-208	ENST00000469356	POLR2A	P24928	1970 aa	Known RBP	27.61	■■■□□ 2.01
SREBF1-208	ENST00000469356	ZMYM1	Q5SVZ6	1142 aa		27.61	■■■□□ 2.01
SREBF1-208	ENST00000469356	ADGRA1	Q86SQ6	560 aa		27.61	■■■□□ 2.01
SREBF1-208	ENST00000469356	SMC1B	Q8NDV3	1235 aa		27.61	■■■□□ 2.01
SREBF1-208	ENST00000469356	RBM46	Q8TBY0	533 aa	Known RBP	27.61	■■■□□ 2.01
SREBF1-208	ENST00000469356	RUFY2	Q8WXA3	655 aa		27.61	■■■□□ 2.01
SREBF1-208	ENST00000469356	CRNKL1	Q9BZJ0	848 aa	Known RBP	27.61	■■■□□ 2.01
SREBF1-208	ENST00000469356	PPP2R3B	Q9Y5P8	575 aa		27.61	■■■□□ 2.01
SREBF1-208	ENST00000469356	MFAP1	P55081	439 aa	Known RBP	27.6	■■■□□ 2.01
SREBF1-208	ENST00000469356	CASC1	Q6TDU7	716 aa		27.59	■■■□□ 2.01
SREBF1-208	ENST00000469356	KRT26	Q7Z3Y9	468 aa		27.59	■■■□□ 2.01
SREBF1-208	ENST00000469356	FAM83A	Q86UY5	434 aa		27.59	■■■□□ 2.01
SREBF1-208	ENST00000469356	DDRGK1	Q96HY6	314 aa		27.59	■■■□□ 2.01
SREBF1-208	ENST00000469356	IDI2	Q9BXS1	227 aa		27.59	■■■□□ 2.01
SREBF1-208	ENST00000469356	NPM3	O75607	178 aa	Known RBP	27.58	■■■□□ 2.01
SREBF1-208	ENST00000469356	POTEI	P0CG38	1075 aa		27.58	■■■□□ 2.01
SREBF1-208	ENST00000469356	POTEJ	P0CG39	1038 aa		27.58	■■■□□ 2.01
SREBF1-208	ENST00000469356	GNAT2	P19087	354 aa		27.58	■■■□□ 2.01
SREBF1-208	ENST00000469356	RHBDL3	P58872	404 aa		27.58	■■■□□ 2.01
SREBF1-208	ENST00000469356	DYNLL1	P63167	89 aa	Known RBP	27.58	■■■□□ 2.01
SREBF1-208	ENST00000469356	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	27.58	■■■□□ 2.01
SREBF1-208	ENST00000469356	RIOK1	Q9BRS2	568 aa	Known RBP	27.58	■■■□□ 2.01
SREBF1-208	ENST00000469356	TCP10L2	B9ZVM9	353 aa		27.57	■■■□□ 2
SREBF1-208	ENST00000469356	ENTPD3	O75355	529 aa		27.57	■■■□□ 2
SREBF1-208	ENST00000469356	MBD4	O95243	580 aa		27.57	■■■□□ 2
SREBF1-208	ENST00000469356	USP5	P45974	858 aa		27.57	■■■□□ 2
SREBF1-208	ENST00000469356	MCMDC2	Q4G0Z9	681 aa		27.57	■■■□□ 2
SREBF1-208	ENST00000469356	OSBP2	Q969R2	916 aa		27.57	■■■□□ 2
SREBF1-208	ENST00000469356	PUS7L	Q9H0K6	701 aa	Known RBP	27.57	■■■□□ 2
SREBF1-208	ENST00000469356	FSTL1	Q12841	308 aa		27.56	■■■□□ 2
SREBF1-208	ENST00000469356	MAP1S	Q66K74	1059 aa	Predicted RBP	27.56	■■■□□ 2
SREBF1-208	ENST00000469356	ASTN2	O75129	1339 aa	Predicted RBP	27.56	■■■□□ 2
SREBF1-208	ENST00000469356	NMI	Q13287	307 aa	Predicted RBP	27.55	■■■□□ 2
SREBF1-208	ENST00000469356	FAM151A	Q8WW52	585 aa		27.55	■■■□□ 2
SREBF1-208	ENST00000469356	HOOK2	Q96ED9	719 aa		27.55	■■■□□ 2
SREBF1-208	ENST00000469356	DEFB129	Q9H1M3	183 aa		27.55	■■■□□ 2
SREBF1-208	ENST00000469356	ARMT1	Q9H993	441 aa		27.55	■■■□□ 2
SREBF1-208	ENST00000469356	GPAA1	O43292	621 aa		27.54	■■■□□ 2
SREBF1-208	ENST00000469356	USP48	Q86UV5	1035 aa		27.54	■■■□□ 2
SREBF1-208	ENST00000469356	LCORL	Q8N3X6	602 aa		27.54	■■■□□ 2
SREBF1-208	ENST00000469356	TGFBRAP1	Q8WUH2	860 aa		27.54	■■■□□ 2
SREBF1-208	ENST00000469356	WDHD1	O75717	1129 aa	Predicted RBP	27.53	■■■□□ 2
SREBF1-208	ENST00000469356	CHML	P26374	656 aa		27.53	■■■□□ 2
SREBF1-208	ENST00000469356	NF2	P35240	595 aa		27.53	■■■□□ 2
SREBF1-208	ENST00000469356	CACNB3	P54284	484 aa		27.53	■■■□□ 2
SREBF1-208	ENST00000469356	PICALM	Q13492	652 aa		27.53	■■■□□ 2
SREBF1-208	ENST00000469356	RASA3	Q14644	834 aa		27.53	■■■□□ 2
SREBF1-208	ENST00000469356	SLFNL1	Q499Z3	407 aa		27.53	■■■□□ 2
SREBF1-208	ENST00000469356	CWC27	Q6UX04	472 aa	Known RBP	27.53	■■■□□ 2
SREBF1-208	ENST00000469356	ATP8A2	Q9NTI2	1148 aa		27.53	■■■□□ 2
SREBF1-208	ENST00000469356	CDC45	O75419	566 aa		27.52	■■■□□ 2
SREBF1-208	ENST00000469356	CHGB	P05060	677 aa		27.52	■■■□□ 2
SREBF1-208	ENST00000469356	SUPT20HL1	Q3ZLR7	823 aa		27.52	■■■□□ 2
SREBF1-208	ENST00000469356	STRBP	Q96SI9	672 aa	Known RBP	27.52	■■■□□ 2
SREBF1-208	ENST00000469356	GLIS2	Q9BZE0	524 aa	Predicted RBP	27.52	■■■□□ 2
SREBF1-208	ENST00000469356	SLC4A4	Q9Y6R1	1079 aa		27.52	■■■□□ 2
SREBF1-208	ENST00000469356	RAD50	Q92878	1312 aa		27.52	■■■□□ 2
SREBF1-208	ENST00000469356	RPAP1	Q9BWH6	1393 aa	Predicted RBP	27.52	■■■□□ 2
SREBF1-208	ENST00000469356		M0R2C6	588 aa		27.51	■■□□□ 1.99
SREBF1-208	ENST00000469356	AMOTL1	Q8IY63	956 aa		27.51	■■□□□ 1.99
SREBF1-208	ENST00000469356	FAM227B	Q96M60	508 aa		27.51	■■□□□ 1.99

Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms