RNA–Protein interactions for RNA: ENST00000448494.1

LINC00342-202, long intergenic non-protein coding RNA 342, humanhuman

TSL 2 BASIC

Gene LINC00342, Length 2,351 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00342-202ENST00000448494 VPS37CA5D8V6 355 aaPredicted RBP12.18□□□□□ -0.46
LINC00342-202ENST00000448494 RNF8O76064 485 aa12.18□□□□□ -0.46
LINC00342-202ENST00000448494 SKOR1P84550 965 aa12.18□□□□□ -0.46
LINC00342-202ENST00000448494 USP4Q13107 963 aa12.18□□□□□ -0.46
LINC00342-202ENST00000448494 CCDC38Q502W7 563 aa12.18□□□□□ -0.46
LINC00342-202ENST00000448494 AOPEPQ8N6M6 819 aa12.18□□□□□ -0.46
LINC00342-202ENST00000448494 CFAP53Q96M91 514 aa12.18□□□□□ -0.46
LINC00342-202ENST00000448494 SCLT1Q96NL6 688 aa12.18□□□□□ -0.46
LINC00342-202ENST00000448494 GORASP1Q9BQQ3 440 aa12.18□□□□□ -0.46
LINC00342-202ENST00000448494 HOOK1Q9UJC3 728 aaKnown RBP12.18□□□□□ -0.46
LINC00342-202ENST00000448494 BIN1O00499 593 aa12.18□□□□□ -0.46
LINC00342-202ENST00000448494 GIGYF1O75420 1035 aaPredicted RBP12.18□□□□□ -0.46
LINC00342-202ENST00000448494 IFIT2P09913 472 aaKnown RBP12.18□□□□□ -0.46
LINC00342-202ENST00000448494 ZBED6P86452 979 aa12.18□□□□□ -0.46
LINC00342-202ENST00000448494 STIM1Q13586 685 aa12.18□□□□□ -0.46
LINC00342-202ENST00000448494 MYBPC2Q14324 1141 aa12.18□□□□□ -0.46
LINC00342-202ENST00000448494 E2F5Q15329 346 aa12.18□□□□□ -0.46
LINC00342-202ENST00000448494 GALNT15Q8N3T1 639 aa12.18□□□□□ -0.46
LINC00342-202ENST00000448494 C17orf50Q8WW18 174 aa12.18□□□□□ -0.46
LINC00342-202ENST00000448494 ZSCAN31Q96LW9 406 aaPredicted RBP12.18□□□□□ -0.46
LINC00342-202ENST00000448494 AGAP3Q96P47 875 aa12.18□□□□□ -0.46
LINC00342-202ENST00000448494 TRIM7Q9C029 511 aa12.18□□□□□ -0.46
LINC00342-202ENST00000448494 YIPF3Q9GZM5 350 aa12.18□□□□□ -0.46
LINC00342-202ENST00000448494 SH2B1Q9NRF2 756 aaPredicted RBP12.18□□□□□ -0.46
LINC00342-202ENST00000448494 IFNKQ9P0W0 207 aa12.18□□□□□ -0.46
LINC00342-202ENST00000448494 ZNF202O95125 648 aa12.17□□□□□ -0.46
LINC00342-202ENST00000448494 AK2P54819 239 aa12.17□□□□□ -0.46
LINC00342-202ENST00000448494 DEUP1Q05D60 604 aa12.17□□□□□ -0.46
LINC00342-202ENST00000448494 CCDC57Q2TAC2 916 aa12.17□□□□□ -0.46
LINC00342-202ENST00000448494 RUFY3Q7L099 469 aa12.17□□□□□ -0.46
LINC00342-202ENST00000448494 ANKRD44Q8N8A2 993 aa12.17□□□□□ -0.46
LINC00342-202ENST00000448494 RASSF8Q8NHQ8 419 aa12.17□□□□□ -0.46
LINC00342-202ENST00000448494 SMARCC2Q8TAQ2 1214 aa12.17□□□□□ -0.46
LINC00342-202ENST00000448494 CCDC12Q8WUD4 166 aaPredicted RBP12.17□□□□□ -0.46
LINC00342-202ENST00000448494 KNDC1Q76NI1 1749 aa12.17□□□□□ -0.46
LINC00342-202ENST00000448494 MGRN1O60291 552 aa12.16□□□□□ -0.46
LINC00342-202ENST00000448494 FCHSD2O94868 740 aa12.16□□□□□ -0.46
LINC00342-202ENST00000448494 PDCP20941 246 aa12.16□□□□□ -0.46
LINC00342-202ENST00000448494 PAX3P23760 479 aa12.16□□□□□ -0.46
LINC00342-202ENST00000448494 CRELD2Q6UXH1 353 aaPredicted RBP12.16□□□□□ -0.46
LINC00342-202ENST00000448494 FAM177A1Q8N128 213 aaPredicted RBP12.16□□□□□ -0.46
LINC00342-202ENST00000448494 SDR16C5Q8N3Y7 309 aa12.16□□□□□ -0.46
LINC00342-202ENST00000448494 COG1Q8WTW3 980 aa12.16□□□□□ -0.46
LINC00342-202ENST00000448494 TSC22D3Q99576 134 aa12.16□□□□□ -0.46
LINC00342-202ENST00000448494 YIPF2Q9BWQ6 316 aa12.16□□□□□ -0.46
LINC00342-202ENST00000448494 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.16□□□□□ -0.46
LINC00342-202ENST00000448494 ARAP3Q8WWN8 1544 aa12.16□□□□□ -0.46
LINC00342-202ENST00000448494 PTPRMP28827 1452 aa12.16□□□□□ -0.46
LINC00342-202ENST00000448494 PIP4K2BP78356 416 aa12.16□□□□□ -0.46
LINC00342-202ENST00000448494 RPAP2Q8IXW5 612 aaPredicted RBP12.16□□□□□ -0.46
LINC00342-202ENST00000448494 NSMCE1Q8WV22 266 aa12.16□□□□□ -0.46
LINC00342-202ENST00000448494 TRIM4Q9C037 500 aa12.16□□□□□ -0.46
LINC00342-202ENST00000448494 TRAPPC8Q9Y2L5 1435 aa12.16□□□□□ -0.46
LINC00342-202ENST00000448494 A6NHS1 94 aa12.15□□□□□ -0.46
LINC00342-202ENST00000448494 B4DLN1 442 aa12.15□□□□□ -0.46
LINC00342-202ENST00000448494 GOLGA8KD6RF30 607 aa12.15□□□□□ -0.46
LINC00342-202ENST00000448494 CUL3Q13618 768 aa12.15□□□□□ -0.46
LINC00342-202ENST00000448494 ZSWIM4Q9H7M6 989 aa12.15□□□□□ -0.46
LINC00342-202ENST00000448494 PUF60Q9UHX1 559 aaKnown RBP12.15□□□□□ -0.46
LINC00342-202ENST00000448494 C15orf41Q9Y2V0 281 aa12.15□□□□□ -0.46
LINC00342-202ENST00000448494 SASH1O94885 1247 aa12.15□□□□□ -0.46
LINC00342-202ENST00000448494 BLMHQ13867 455 aa12.15□□□□□ -0.46
LINC00342-202ENST00000448494 RNF187Q5TA31 235 aaPredicted RBP12.15□□□□□ -0.46
LINC00342-202ENST00000448494 CCHCR1Q8TD31 782 aa12.15□□□□□ -0.46
LINC00342-202ENST00000448494 PGBD1Q96JS3 809 aa12.15□□□□□ -0.46
LINC00342-202ENST00000448494 CDK13Q14004 1512 aaKnown RBP12.15□□□□□ -0.47
LINC00342-202ENST00000448494 RHOXF2BP0C7M4 288 aa12.14□□□□□ -0.47
LINC00342-202ENST00000448494 GGCXP38435 758 aa12.14□□□□□ -0.47
LINC00342-202ENST00000448494 PDE1AP54750 535 aa12.14□□□□□ -0.47
LINC00342-202ENST00000448494 TMED1Q13445 227 aa12.14□□□□□ -0.47
LINC00342-202ENST00000448494 WHAMMP3Q1A5X7 153 aa12.14□□□□□ -0.47
LINC00342-202ENST00000448494 MRPL50Q8N5N7 158 aaKnown RBP12.14□□□□□ -0.47
LINC00342-202ENST00000448494 JAKMIP1Q96N16 626 aaKnown RBP12.14□□□□□ -0.47
LINC00342-202ENST00000448494 RHOXF2Q9BQY4 288 aa12.14□□□□□ -0.47
LINC00342-202ENST00000448494 CARD14Q9BXL6 1004 aa12.14□□□□□ -0.47
LINC00342-202ENST00000448494 EHD4Q9H223 541 aa12.14□□□□□ -0.47
LINC00342-202ENST00000448494 CTAGE15A4D2H0 777 aa12.14□□□□□ -0.47
LINC00342-202ENST00000448494 SRRM3A6NNA2 597 aaPredicted RBP12.14□□□□□ -0.47
LINC00342-202ENST00000448494 BUB1BO60566 1050 aaPredicted RBP12.14□□□□□ -0.47
LINC00342-202ENST00000448494 LUC7L3O95232 432 aaKnown RBP12.14□□□□□ -0.47
LINC00342-202ENST00000448494 LINGO3P0C6S8 592 aa12.14□□□□□ -0.47
LINC00342-202ENST00000448494 CTAGE8P0CG41 777 aa12.14□□□□□ -0.47
LINC00342-202ENST00000448494 GNAT1P11488 350 aa12.14□□□□□ -0.47
LINC00342-202ENST00000448494 MFSD4BQ5TF39 518 aa12.14□□□□□ -0.47
LINC00342-202ENST00000448494 CTAGE6Q86UF2 777 aa12.14□□□□□ -0.47
LINC00342-202ENST00000448494 CCAR1Q8IX12 1150 aaKnown RBP12.14□□□□□ -0.47
LINC00342-202ENST00000448494 CTAGE4Q8IX94 777 aa12.14□□□□□ -0.47
LINC00342-202ENST00000448494 CUL5Q93034 780 aa12.14□□□□□ -0.47
LINC00342-202ENST00000448494 DNAAF2Q9NVR5 837 aaKnown RBP12.14□□□□□ -0.47
LINC00342-202ENST00000448494 TRIM35Q9UPQ4 493 aa12.14□□□□□ -0.47
LINC00342-202ENST00000448494 EFCAB6Q5THR3 1501 aa12.14□□□□□ -0.47
LINC00342-202ENST00000448494 TUBGCP6Q96RT7 1819 aa12.13□□□□□ -0.47
LINC00342-202ENST00000448494 CBFA2T2O43439 604 aa12.13□□□□□ -0.47
LINC00342-202ENST00000448494 XRCC4Q13426 336 aa12.13□□□□□ -0.47
LINC00342-202ENST00000448494 MKRN4PQ13434 485 aaPredicted RBP12.13□□□□□ -0.47
LINC00342-202ENST00000448494 ACCSLQ4AC99 568 aa12.13□□□□□ -0.47
LINC00342-202ENST00000448494 LARP1BQ659C4 914 aaKnown RBP12.13□□□□□ -0.47
LINC00342-202ENST00000448494 TMEM139Q8IV31 216 aa12.13□□□□□ -0.47
LINC00342-202ENST00000448494 RIPOR2Q9Y4F9 1068 aa12.13□□□□□ -0.47
LINC00342-202ENST00000448494 NRXN1Q9ULB1 1477 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms