RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 CNKSR1Q969H4 720 aa6.58□□□□□ -1.36
PTPN4-206ENST00000441089 TAF1DQ9H5J8 278 aaPredicted RBP6.58□□□□□ -1.36
PTPN4-206ENST00000441089 KLF15Q9UIH9 416 aa6.58□□□□□ -1.36
PTPN4-206ENST00000441089 GDF2Q9UK05 429 aaPredicted RBP6.58□□□□□ -1.36
PTPN4-206ENST00000441089 PCDHB11Q9Y5F2 797 aa6.58□□□□□ -1.36
PTPN4-206ENST00000441089 MAP3K19Q56UN5 1328 aa6.57□□□□□ -1.36
PTPN4-206ENST00000441089 COL5A3P25940 1745 aaPredicted RBP6.57□□□□□ -1.36
PTPN4-206ENST00000441089 AKAP11Q9UKA4 1901 aa6.57□□□□□ -1.36
PTPN4-206ENST00000441089 NFKBIEO00221 500 aa6.57□□□□□ -1.36
PTPN4-206ENST00000441089 DDNO94850 711 aaPredicted RBP6.57□□□□□ -1.36
PTPN4-206ENST00000441089 EPXP11678 715 aa6.57□□□□□ -1.36
PTPN4-206ENST00000441089 AMPD1P23109 780 aa6.57□□□□□ -1.36
PTPN4-206ENST00000441089 MSX1P28360 303 aa6.57□□□□□ -1.36
PTPN4-206ENST00000441089 ITPK1Q13572 414 aa6.57□□□□□ -1.36
PTPN4-206ENST00000441089 C4orf17Q53FE4 359 aa6.57□□□□□ -1.36
PTPN4-206ENST00000441089 EAPPQ56P03 285 aaPredicted RBP6.57□□□□□ -1.36
PTPN4-206ENST00000441089 PNMA8AQ86V59 439 aaPredicted RBP6.57□□□□□ -1.36
PTPN4-206ENST00000441089 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.57□□□□□ -1.36
PTPN4-206ENST00000441089 CNTROBQ8N137 903 aa6.57□□□□□ -1.36
PTPN4-206ENST00000441089 PIGBQ92521 554 aa6.57□□□□□ -1.36
PTPN4-206ENST00000441089 ADAMTSL1Q8N6G6 1762 aa6.57□□□□□ -1.36
PTPN4-206ENST00000441089 ST20-MTHFSA0A0A6YYL1 179 aa6.56□□□□□ -1.36
PTPN4-206ENST00000441089 GNB5O14775 395 aa6.56□□□□□ -1.36
PTPN4-206ENST00000441089 RPS6KA4O75676 772 aa6.56□□□□□ -1.36
PTPN4-206ENST00000441089 BMP4P12644 408 aa6.56□□□□□ -1.36
PTPN4-206ENST00000441089 FGFR3P22607 806 aa6.56□□□□□ -1.36
PTPN4-206ENST00000441089 GRM1Q13255 1194 aa6.56□□□□□ -1.36
PTPN4-206ENST00000441089 ESYT1Q9BSJ8 1104 aa6.56□□□□□ -1.36
PTPN4-206ENST00000441089 DNAAF2Q9NVR5 837 aaKnown RBP6.56□□□□□ -1.36
PTPN4-206ENST00000441089 TMOD3Q9NYL9 352 aa6.56□□□□□ -1.36
PTPN4-206ENST00000441089 ADAMTS7Q9UKP4 1686 aa6.55□□□□□ -1.36
PTPN4-206ENST00000441089 CNTNAP4Q9C0A0 1308 aa6.55□□□□□ -1.36
PTPN4-206ENST00000441089 LTBP3Q9NS15 1303 aa6.55□□□□□ -1.36
PTPN4-206ENST00000441089 A0A1B0GTH6 734 aa6.55□□□□□ -1.36
PTPN4-206ENST00000441089 NEURL1BA8MQ27 555 aa6.55□□□□□ -1.36
PTPN4-206ENST00000441089 FXR1P51114 621 aaKnown RBP eCLIP6.55□□□□□ -1.36
PTPN4-206ENST00000441089 ZMYM1Q5SVZ6 1142 aa6.55□□□□□ -1.36
PTPN4-206ENST00000441089 CYP4F22Q6NT55 531 aa6.55□□□□□ -1.36
PTPN4-206ENST00000441089 NME9Q86XW9 330 aa6.55□□□□□ -1.36
PTPN4-206ENST00000441089 RNF135Q8IUD6 432 aa6.55□□□□□ -1.36
PTPN4-206ENST00000441089 TRIM11Q96F44 468 aa6.55□□□□□ -1.36
PTPN4-206ENST00000441089 TESK2Q96S53 571 aa6.55□□□□□ -1.36
PTPN4-206ENST00000441089 DDX21Q9NR30 783 aaKnown RBP eCLIP6.55□□□□□ -1.36
PTPN4-206ENST00000441089 HACL1Q9UJ83 578 aa6.55□□□□□ -1.36
PTPN4-206ENST00000441089 ATXN7L1Q9ULK2 861 aaPredicted RBP6.55□□□□□ -1.36
PTPN4-206ENST00000441089 WASHC2AQ641Q2 1341 aa6.54□□□□□ -1.36
PTPN4-206ENST00000441089 H0YIN7 160 aa6.54□□□□□ -1.36
PTPN4-206ENST00000441089 CYP27B1O15528 508 aa6.54□□□□□ -1.36
PTPN4-206ENST00000441089 HOXC9P31274 260 aa6.54□□□□□ -1.36
PTPN4-206ENST00000441089 EPHX2P34913 555 aa6.54□□□□□ -1.36
PTPN4-206ENST00000441089 AMPHP49418 695 aa6.54□□□□□ -1.36
PTPN4-206ENST00000441089 DDR1Q08345 913 aa6.54□□□□□ -1.36
PTPN4-206ENST00000441089 RSPO4Q2I0M5 234 aaPredicted RBP6.54□□□□□ -1.36
PTPN4-206ENST00000441089 BANK1Q8NDB2 785 aa6.54□□□□□ -1.36
PTPN4-206ENST00000441089 SLC17A8Q8NDX2 589 aa6.54□□□□□ -1.36
PTPN4-206ENST00000441089 CCDC85AQ96PX6 553 aaPredicted RBP6.54□□□□□ -1.36
PTPN4-206ENST00000441089 KRTAP9-9Q9BYP9 154 aa6.54□□□□□ -1.36
PTPN4-206ENST00000441089 KRTAP9-4Q9BYQ2 154 aa6.54□□□□□ -1.36
PTPN4-206ENST00000441089 TAOK3Q9H2K8 898 aa6.54□□□□□ -1.36
PTPN4-206ENST00000441089 NRXN2Q9P2S2 1712 aa6.53□□□□□ -1.36
PTPN4-206ENST00000441089 KIF7Q2M1P5 1343 aa6.53□□□□□ -1.36
PTPN4-206ENST00000441089 USP42Q9H9J4 1324 aaKnown RBP6.53□□□□□ -1.36
PTPN4-206ENST00000441089 RANBP2P49792 3224 aaKnown RBP6.53□□□□□ -1.36
PTPN4-206ENST00000441089 POLRMTO00411 1230 aaKnown RBP6.53□□□□□ -1.36
PTPN4-206ENST00000441089 NBPF6Q5VWK0 638 aa6.53□□□□□ -1.36
PTPN4-206ENST00000441089 MAP1SQ66K74 1059 aaPredicted RBP6.53□□□□□ -1.36
PTPN4-206ENST00000441089 CHSY3Q70JA7 882 aa6.53□□□□□ -1.36
PTPN4-206ENST00000441089 FCHSD1Q86WN1 690 aa6.53□□□□□ -1.36
PTPN4-206ENST00000441089 NBPF4Q96M43 638 aa6.53□□□□□ -1.36
PTPN4-206ENST00000441089 ZSCAN10Q96SZ4 725 aaPredicted RBP6.53□□□□□ -1.36
PTPN4-206ENST00000441089 ASAP1Q9ULH1 1129 aa6.53□□□□□ -1.36
PTPN4-206ENST00000441089 PHF24Q9UPV7 400 aa6.53□□□□□ -1.36
PTPN4-206ENST00000441089 RTL1A6NKG5 1358 aa6.53□□□□□ -1.36
PTPN4-206ENST00000441089 CACNA1SQ13698 1873 aa6.53□□□□□ -1.36
PTPN4-206ENST00000441089 EDC4Q6P2E9 1401 aaKnown RBP6.52□□□□□ -1.37
PTPN4-206ENST00000441089 AOC2O75106 756 aa6.52□□□□□ -1.37
PTPN4-206ENST00000441089 GNRH1P01148 92 aa6.52□□□□□ -1.37
PTPN4-206ENST00000441089 TM4SF1P30408 202 aa6.52□□□□□ -1.37
PTPN4-206ENST00000441089 TSGA10IPQ3SY00 556 aa6.52□□□□□ -1.37
PTPN4-206ENST00000441089 SOGA3Q5TF21 947 aa6.52□□□□□ -1.37
PTPN4-206ENST00000441089 HDGFL2Q7Z4V5 671 aaPredicted RBP6.52□□□□□ -1.37
PTPN4-206ENST00000441089 C2CD5Q86YS7 1000 aa6.52□□□□□ -1.37
PTPN4-206ENST00000441089 XAGE2Q96GT9 111 aa6.52□□□□□ -1.37
PTPN4-206ENST00000441089 HHIPL1Q96JK4 782 aa6.52□□□□□ -1.37
PTPN4-206ENST00000441089 KDRP35968 1356 aa6.52□□□□□ -1.37
PTPN4-206ENST00000441089 SBNO2Q9Y2G9 1366 aa6.52□□□□□ -1.37
PTPN4-206ENST00000441089 PITPNM2Q9BZ72 1349 aa6.51□□□□□ -1.37
PTPN4-206ENST00000441089 C21orf2O43822 256 aa6.51□□□□□ -1.37
PTPN4-206ENST00000441089 NOGQ13253 232 aa6.51□□□□□ -1.37
PTPN4-206ENST00000441089 NKAPLQ5M9Q1 402 aa6.51□□□□□ -1.37
PTPN4-206ENST00000441089 USHBP1Q8N6Y0 703 aa6.51□□□□□ -1.37
PTPN4-206ENST00000441089 ATG3Q9NT62 314 aa6.51□□□□□ -1.37
PTPN4-206ENST00000441089 SPG7Q9UQ90 795 aa6.51□□□□□ -1.37
PTPN4-206ENST00000441089 INSRP06213 1382 aa6.51□□□□□ -1.37
PTPN4-206ENST00000441089 ARFGEF2Q9Y6D5 1785 aa6.5□□□□□ -1.37
PTPN4-206ENST00000441089 APBB1O00213 710 aa6.5□□□□□ -1.37
PTPN4-206ENST00000441089 ARAFP10398 606 aa6.5□□□□□ -1.37
PTPN4-206ENST00000441089 ATP4AP20648 1035 aa6.5□□□□□ -1.37
PTPN4-206ENST00000441089 LBRQ14739 615 aaKnown RBP6.5□□□□□ -1.37
PTPN4-206ENST00000441089 PKN2Q16513 984 aaKnown RBP6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms