RNA–Protein interactions for RNA: ENST00000440048.1

VARS-217, Transcript of valyl-tRNA synthetase, humanhuman

TSL 1 (best)

Gene VARS, Length 804 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-217ENST00000440048 FKBP1CQ5VVH2 108 aa29■■■□□ 2.23
VARS-217ENST00000440048 AACSQ86V21 672 aa29■■■□□ 2.23
VARS-217ENST00000440048 KIF1BPQ96EK5 621 aa29■■■□□ 2.23
VARS-217ENST00000440048 ZNF512BQ96KM6 892 aaPredicted RBP29■■■□□ 2.23
VARS-217ENST00000440048 TEPSINQ96N21 525 aa29■■■□□ 2.23
VARS-217ENST00000440048 TMEM39BQ9GZU3 492 aa29■■■□□ 2.23
VARS-217ENST00000440048 SNRKQ9NRH2 765 aa29■■■□□ 2.23
VARS-217ENST00000440048 ANGEL1Q9UNK9 670 aaKnown RBP29■■■□□ 2.23
VARS-217ENST00000440048 CDC42EP5Q6NZY7 148 aa28.99■■■□□ 2.23
VARS-217ENST00000440048 RASAL3Q86YV0 1011 aa28.99■■■□□ 2.23
VARS-217ENST00000440048 CDAN1Q8IWY9 1227 aa28.99■■■□□ 2.23
VARS-217ENST00000440048 GAKO14976 1311 aa28.98■■■□□ 2.23
VARS-217ENST00000440048 PPP1R12BO60237 982 aaPredicted RBP28.98■■■□□ 2.23
VARS-217ENST00000440048 RAB11FIP3O75154 756 aa28.98■■■□□ 2.23
VARS-217ENST00000440048 MECOMQ03112 1051 aa28.98■■■□□ 2.23
VARS-217ENST00000440048 SLF2Q8IX21 1173 aa28.98■■■□□ 2.23
VARS-217ENST00000440048 CA12O43570 354 aa28.97■■■□□ 2.23
VARS-217ENST00000440048 MAP3K11Q16584 847 aa28.97■■■□□ 2.23
VARS-217ENST00000440048 LDLRAD1Q5T700 205 aa28.97■■■□□ 2.23
VARS-217ENST00000440048 FAM83AQ86UY5 434 aa28.97■■■□□ 2.23
VARS-217ENST00000440048 ZNF384Q8TF68 577 aa28.97■■■□□ 2.23
VARS-217ENST00000440048 FAM163AQ96GL9 167 aaPredicted RBP28.97■■■□□ 2.23
VARS-217ENST00000440048 USP40Q9NVE5 1235 aa28.96■■■□□ 2.23
VARS-217ENST00000440048 LBX1P52954 281 aa28.95■■■□□ 2.22
VARS-217ENST00000440048 CLASRPQ8N2M8 674 aaKnown RBP28.95■■■□□ 2.22
VARS-217ENST00000440048 NSUN4Q96CB9 384 aaKnown RBP28.95■■■□□ 2.22
VARS-217ENST00000440048 RAI14Q9P0K7 980 aa28.95■■■□□ 2.22
VARS-217ENST00000440048 MYO5AQ9Y4I1 1855 aaKnown RBP28.95■■■□□ 2.22
VARS-217ENST00000440048 MROH7-TTC4A0A0A0MT08 1334 aa28.94■■■□□ 2.22
VARS-217ENST00000440048 USP2O75604 605 aaPredicted RBP28.94■■■□□ 2.22
VARS-217ENST00000440048 CYP2E1P05181 493 aaPredicted RBP28.94■■■□□ 2.22
VARS-217ENST00000440048 HSPA8P11142 646 aaKnown RBP28.94■■■□□ 2.22
VARS-217ENST00000440048 ZAP70P43403 619 aa28.94■■■□□ 2.22
VARS-217ENST00000440048 KIF23Q02241 960 aaPredicted RBP28.94■■■□□ 2.22
VARS-217ENST00000440048 LRP2BPQ9P2M1 347 aa28.94■■■□□ 2.22
VARS-217ENST00000440048 IREB2P48200 963 aaKnown RBP28.92■■■□□ 2.22
VARS-217ENST00000440048 GSTO1P78417 241 aa28.92■■■□□ 2.22
VARS-217ENST00000440048 NFIAQ12857 509 aa28.92■■■□□ 2.22
VARS-217ENST00000440048 CRBNQ96SW2 442 aa28.92■■■□□ 2.22
VARS-217ENST00000440048 AK9Q5TCS8 1911 aa28.91■■■□□ 2.22
VARS-217ENST00000440048 LDHCP07864 332 aa28.91■■■□□ 2.22
VARS-217ENST00000440048 BTDP43251 543 aa28.91■■■□□ 2.22
VARS-217ENST00000440048 TCP10Q12799 353 aa28.91■■■□□ 2.22
VARS-217ENST00000440048 FAM151AQ8WW52 585 aa28.91■■■□□ 2.22
VARS-217ENST00000440048 BCL11AQ9H165 835 aa28.91■■■□□ 2.22
VARS-217ENST00000440048 FAM198AQ9UFP1 575 aa28.91■■■□□ 2.22
VARS-217ENST00000440048 RPAP1Q9BWH6 1393 aaPredicted RBP28.9■■■□□ 2.22
VARS-217ENST00000440048 GPR75-ASB3A0A0A6YYF3 556 aa28.9■■■□□ 2.22
VARS-217ENST00000440048 IFIT2P09913 472 aaKnown RBP28.9■■■□□ 2.22
VARS-217ENST00000440048 CLMNQ96JQ2 1002 aa28.9■■■□□ 2.22
VARS-217ENST00000440048 PIH1D3Q9NQM4 214 aaKnown RBP28.9■■■□□ 2.22
VARS-217ENST00000440048 PCDHB15Q9Y5E8 787 aa28.9■■■□□ 2.22
VARS-217ENST00000440048 MAST2Q6P0Q8 1798 aa28.9■■■□□ 2.22
VARS-217ENST00000440048 OTOFQ9HC10 1997 aa28.9■■■□□ 2.22
VARS-217ENST00000440048 REM2Q8IYK8 340 aaPredicted RBP28.89■■■□□ 2.22
VARS-217ENST00000440048 UNCXA6NJT0 531 aa28.88■■■□□ 2.21
VARS-217ENST00000440048 SLC10A4Q96EP9 437 aa28.88■■■□□ 2.21
VARS-217ENST00000440048 CSRNP1Q96S65 589 aa28.88■■■□□ 2.21
VARS-217ENST00000440048 IDI2Q9BXS1 227 aa28.88■■■□□ 2.21
VARS-217ENST00000440048 ZBTB4Q9P1Z0 1013 aaPredicted RBP28.88■■■□□ 2.21
VARS-217ENST00000440048 NDUFB9Q9Y6M9 179 aa28.88■■■□□ 2.21
VARS-217ENST00000440048 RHBDL3P58872 404 aa28.87■■■□□ 2.21
VARS-217ENST00000440048 MKRN3Q13064 507 aaKnown RBP28.87■■■□□ 2.21
VARS-217ENST00000440048 ANKRD13AQ8IZ07 590 aa28.87■■■□□ 2.21
VARS-217ENST00000440048 LRRCC1Q9C099 1032 aa28.87■■■□□ 2.21
VARS-217ENST00000440048 DCTPP1Q9H773 170 aa28.87■■■□□ 2.21
VARS-217ENST00000440048 RFX7Q2KHR2 1363 aa28.87■■■□□ 2.21
VARS-217ENST00000440048 WDHD1O75717 1129 aaPredicted RBP28.86■■■□□ 2.21
VARS-217ENST00000440048 RGS3P49796 1198 aa28.86■■■□□ 2.21
VARS-217ENST00000440048 NAA16Q6N069 864 aaPredicted RBP28.86■■■□□ 2.21
VARS-217ENST00000440048 ZFPM1Q8IX07 1006 aa28.86■■■□□ 2.21
VARS-217ENST00000440048 HOOK2Q96ED9 719 aa28.86■■■□□ 2.21
VARS-217ENST00000440048 SMARCA5O60264 1052 aaPredicted RBP28.85■■■□□ 2.21
VARS-217ENST00000440048 SPRYD7Q5W111 196 aa28.85■■■□□ 2.21
VARS-217ENST00000440048 IGSF3O75054 1194 aa28.84■■■□□ 2.21
VARS-217ENST00000440048 ENTPD3O75355 529 aa28.84■■■□□ 2.21
VARS-217ENST00000440048 DDX55Q8NHQ9 600 aaKnown RBP eCLIP28.84■■■□□ 2.21
VARS-217ENST00000440048 ANTXR1Q9H6X2 564 aa28.84■■■□□ 2.21
VARS-217ENST00000440048 DDX4Q9NQI0 724 aaKnown RBP28.84■■■□□ 2.21
VARS-217ENST00000440048 DOCK2Q92608 1830 aa28.83■■■□□ 2.21
VARS-217ENST00000440048 MAP3K9P80192 1104 aa28.83■■■□□ 2.21
VARS-217ENST00000440048 DCAF15Q66K64 600 aa28.83■■■□□ 2.21
VARS-217ENST00000440048 PPP1R3FQ6ZSY5 799 aaPredicted RBP28.83■■■□□ 2.21
VARS-217ENST00000440048 PPIL4Q8WUA2 492 aaKnown RBP eCLIP28.83■■■□□ 2.21
VARS-217ENST00000440048 WNK4Q96J92 1243 aa28.83■■■□□ 2.21
VARS-217ENST00000440048 TSKSQ9UJT2 592 aa28.83■■■□□ 2.21
VARS-217ENST00000440048 IDH1O75874 414 aaKnown RBP28.82■■■□□ 2.2
VARS-217ENST00000440048 MAP4K4O95819 1239 aaPredicted RBP28.82■■■□□ 2.2
VARS-217ENST00000440048 MIGA2Q7L4E1 593 aa28.82■■■□□ 2.2
VARS-217ENST00000440048 SAGE1Q9NXZ1 904 aa28.82■■■□□ 2.2
VARS-217ENST00000440048 PICALMQ13492 652 aa28.81■■■□□ 2.2
VARS-217ENST00000440048 ADGRA1Q86SQ6 560 aa28.81■■■□□ 2.2
VARS-217ENST00000440048 NOL10Q9BSC4 688 aaKnown RBP28.81■■■□□ 2.2
VARS-217ENST00000440048 ELP3Q9H9T3 547 aa28.81■■■□□ 2.2
VARS-217ENST00000440048 CASP8AP2Q9UKL3 1982 aa28.81■■■□□ 2.2
VARS-217ENST00000440048 VGLL4Q14135 290 aa28.8■■■□□ 2.2
VARS-217ENST00000440048 SH3BP5LQ7L8J4 393 aa28.8■■■□□ 2.2
VARS-217ENST00000440048 WRNIP1Q96S55 665 aa28.8■■■□□ 2.2
VARS-217ENST00000440048 ZNF341Q9BYN7 854 aa28.8■■■□□ 2.2
VARS-217ENST00000440048 AATFQ9NY61 560 aaKnown RBP eCLIP28.8■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms