RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 MYSM1Q5VVJ2 828 aa19.06■□□□□ 0.64
CLCNKA-203ENST00000439316 RGS22Q8NE09 1264 aa19.06■□□□□ 0.64
CLCNKA-203ENST00000439316 KCND1Q9NSA2 647 aa19.06■□□□□ 0.64
CLCNKA-203ENST00000439316 ORC3Q9UBD5 711 aaPredicted RBP19.06■□□□□ 0.64
CLCNKA-203ENST00000439316 PCCAP05165 728 aaPredicted RBP19.05■□□□□ 0.64
CLCNKA-203ENST00000439316 SKILP12757 684 aa19.05■□□□□ 0.64
CLCNKA-203ENST00000439316 FAM196AQ6ZSG2 479 aa19.05■□□□□ 0.64
CLCNKA-203ENST00000439316 NYAP1Q6ZVC0 841 aa19.05■□□□□ 0.64
CLCNKA-203ENST00000439316 ZBTB38Q8NAP3 1195 aaPredicted RBP19.05■□□□□ 0.64
CLCNKA-203ENST00000439316 CCDC112Q8NEF3 446 aa19.05■□□□□ 0.64
CLCNKA-203ENST00000439316 NCOA7Q8NI08 942 aa19.05■□□□□ 0.64
CLCNKA-203ENST00000439316 ERCC4Q92889 916 aaPredicted RBP19.05■□□□□ 0.64
CLCNKA-203ENST00000439316 SDF4Q9BRK5 362 aa19.05■□□□□ 0.64
CLCNKA-203ENST00000439316 KIAA1468Q9P260 1216 aa19.05■□□□□ 0.64
CLCNKA-203ENST00000439316 CNTNAP4Q9C0A0 1308 aa19.05■□□□□ 0.64
CLCNKA-203ENST00000439316 SPTLC2O15270 562 aa19.04■□□□□ 0.64
CLCNKA-203ENST00000439316 CAMTA2O94983 1202 aa19.04■□□□□ 0.64
CLCNKA-203ENST00000439316 ZAP70P43403 619 aa19.04■□□□□ 0.64
CLCNKA-203ENST00000439316 CEP135Q66GS9 1140 aa19.04■□□□□ 0.64
CLCNKA-203ENST00000439316 PUS7LQ9H0K6 701 aaKnown RBP19.04■□□□□ 0.64
CLCNKA-203ENST00000439316 USP27XA6NNY8 438 aa19.04■□□□□ 0.64
CLCNKA-203ENST00000439316 GSDMDP57764 484 aa19.04■□□□□ 0.64
CLCNKA-203ENST00000439316 SF3A1Q15459 793 aaKnown RBP19.04■□□□□ 0.64
CLCNKA-203ENST00000439316 ZNF34Q8IZ26 560 aa19.04■□□□□ 0.64
CLCNKA-203ENST00000439316 SYNE4Q8N205 404 aa19.04■□□□□ 0.64
CLCNKA-203ENST00000439316 OSBPL5Q9H0X9 879 aaPredicted RBP19.04■□□□□ 0.64
CLCNKA-203ENST00000439316 PRDM4Q9UKN5 801 aa19.04■□□□□ 0.64
CLCNKA-203ENST00000439316 TAF1LQ8IZX4 1826 aa19.04■□□□□ 0.64
CLCNKA-203ENST00000439316 UBN2Q6ZU65 1347 aa19.03■□□□□ 0.64
CLCNKA-203ENST00000439316 POLR3DP05423 398 aaPredicted RBP19.03■□□□□ 0.64
CLCNKA-203ENST00000439316 CSF1RP07333 972 aa19.03■□□□□ 0.64
CLCNKA-203ENST00000439316 FILIP1Q7Z7B0 1213 aa19.03■□□□□ 0.64
CLCNKA-203ENST00000439316 RALYLQ86SE5 291 aaKnown RBP19.03■□□□□ 0.64
CLCNKA-203ENST00000439316 NBPF11Q86T75 865 aa19.03■□□□□ 0.64
CLCNKA-203ENST00000439316 KIF28PB7ZC32 967 aa19.02■□□□□ 0.64
CLCNKA-203ENST00000439316 GPAA1O43292 621 aa19.02■□□□□ 0.64
CLCNKA-203ENST00000439316 KIF23Q02241 960 aaPredicted RBP19.02■□□□□ 0.64
CLCNKA-203ENST00000439316 DPCR1Q3MIW9 517 aa19.02■□□□□ 0.64
CLCNKA-203ENST00000439316 SMIM5Q71RC9 77 aa19.02■□□□□ 0.64
CLCNKA-203ENST00000439316 IMPACTQ9P2X3 320 aa19.02■□□□□ 0.64
CLCNKA-203ENST00000439316 AKAP11Q9UKA4 1901 aa19.02■□□□□ 0.64
CLCNKA-203ENST00000439316 RC3H1Q5TC82 1133 aaKnown RBP19.02■□□□□ 0.64
CLCNKA-203ENST00000439316 TRMT112Q9UI30 125 aaKnown RBP19.02■□□□□ 0.64
CLCNKA-203ENST00000439316 ZNF213O14771 459 aa19.01■□□□□ 0.63
CLCNKA-203ENST00000439316 CPLX1O14810 134 aa19.01■□□□□ 0.63
CLCNKA-203ENST00000439316 TRIM37O94972 964 aa19.01■□□□□ 0.63
CLCNKA-203ENST00000439316 CBX1P83916 185 aa19.01■□□□□ 0.63
CLCNKA-203ENST00000439316 AXDND1Q5T1B0 1012 aaPredicted RBP19.01■□□□□ 0.63
CLCNKA-203ENST00000439316 ANO1Q5XXA6 986 aa19.01■□□□□ 0.63
CLCNKA-203ENST00000439316 CCAR2Q8N163 923 aaKnown RBP19.01■□□□□ 0.63
CLCNKA-203ENST00000439316 ZSCAN20P17040 1043 aaPredicted RBP19.01■□□□□ 0.63
CLCNKA-203ENST00000439316 IFIT5Q13325 482 aaKnown RBP19.01■□□□□ 0.63
CLCNKA-203ENST00000439316 TAF7LQ5H9L4 462 aa19.01■□□□□ 0.63
CLCNKA-203ENST00000439316 PI16Q6UXB8 463 aa19.01■□□□□ 0.63
CLCNKA-203ENST00000439316 NBPF3Q9H094 633 aa19.01■□□□□ 0.63
CLCNKA-203ENST00000439316 PRDM10Q9NQV6 1147 aa19.01■□□□□ 0.63
CLCNKA-203ENST00000439316 ZMYM6O95789 1325 aa19■□□□□ 0.63
CLCNKA-203ENST00000439316 GNPATO15228 680 aa19■□□□□ 0.63
CLCNKA-203ENST00000439316 CMA1P23946 247 aa19■□□□□ 0.63
CLCNKA-203ENST00000439316 U2AF2P26368 475 aaKnown RBP eCLIP19■□□□□ 0.63
CLCNKA-203ENST00000439316 NLRP12P59046 1061 aa19■□□□□ 0.63
CLCNKA-203ENST00000439316 PTPN14Q15678 1187 aa19■□□□□ 0.63
CLCNKA-203ENST00000439316 SYNE3Q6ZMZ3 975 aa19■□□□□ 0.63
CLCNKA-203ENST00000439316 RAB11FIP4Q86YS3 637 aa19■□□□□ 0.63
CLCNKA-203ENST00000439316 FBXW7Q969H0 707 aa19■□□□□ 0.63
CLCNKA-203ENST00000439316 DDX24Q9GZR7 859 aaKnown RBP eCLIP19■□□□□ 0.63
CLCNKA-203ENST00000439316 GJB4Q9NTQ9 266 aa19■□□□□ 0.63
CLCNKA-203ENST00000439316 BCORQ6W2J9 1755 aa19■□□□□ 0.63
CLCNKA-203ENST00000439316 CDHR2Q9BYE9 1310 aa19■□□□□ 0.63
CLCNKA-203ENST00000439316 MYH3P11055 1940 aa18.99■□□□□ 0.63
CLCNKA-203ENST00000439316 ZNF202O95125 648 aa18.99■□□□□ 0.63
CLCNKA-203ENST00000439316 SLC3A2P08195 630 aaKnown RBP18.99■□□□□ 0.63
CLCNKA-203ENST00000439316 PFKFB1P16118 471 aa18.99■□□□□ 0.63
CLCNKA-203ENST00000439316 MCAMP43121 646 aa18.99■□□□□ 0.63
CLCNKA-203ENST00000439316 ZRSR1Q15695 479 aaKnown RBP18.99■□□□□ 0.63
CLCNKA-203ENST00000439316 UTP14CQ5TAP6 766 aaKnown RBP18.99■□□□□ 0.63
CLCNKA-203ENST00000439316 ZNF512BQ96KM6 892 aaPredicted RBP18.99■□□□□ 0.63
CLCNKA-203ENST00000439316 ECM29Q5VYK3 1845 aa18.99■□□□□ 0.63
CLCNKA-203ENST00000439316 MROH7-TTC4A0A0A0MT08 1334 aa18.99■□□□□ 0.63
CLCNKA-203ENST00000439316 RPS6KA4O75676 772 aa18.99■□□□□ 0.63
CLCNKA-203ENST00000439316 ADD2P35612 726 aa18.99■□□□□ 0.63
CLCNKA-203ENST00000439316 DMTNQ08495 405 aa18.99■□□□□ 0.63
CLCNKA-203ENST00000439316 SUSD4Q5VX71 490 aa18.99■□□□□ 0.63
CLCNKA-203ENST00000439316 CCDC85AQ96PX6 553 aaPredicted RBP18.99■□□□□ 0.63
CLCNKA-203ENST00000439316 FEZ1Q99689 392 aa18.99■□□□□ 0.63
CLCNKA-203ENST00000439316 NIP7Q9Y221 180 aaKnown RBP eCLIP18.99■□□□□ 0.63
CLCNKA-203ENST00000439316 RIPOR2Q9Y4F9 1068 aa18.99■□□□□ 0.63
CLCNKA-203ENST00000439316 IRS4O14654 1257 aaPredicted RBP18.98■□□□□ 0.63
CLCNKA-203ENST00000439316 RXRBP28702 533 aa18.98■□□□□ 0.63
CLCNKA-203ENST00000439316 SLC39A14Q15043 492 aa18.98■□□□□ 0.63
CLCNKA-203ENST00000439316 CCDC150Q8NCX0 1101 aa18.98■□□□□ 0.63
CLCNKA-203ENST00000439316 ZNF592Q92610 1267 aa18.98■□□□□ 0.63
CLCNKA-203ENST00000439316 LRRC4BQ9NT99 713 aa18.98■□□□□ 0.63
CLCNKA-203ENST00000439316 CGNQ9P2M7 1197 aaKnown RBP18.98■□□□□ 0.63
CLCNKA-203ENST00000439316 ANGEL1Q9UNK9 670 aaKnown RBP18.98■□□□□ 0.63
CLCNKA-203ENST00000439316 NCAPHQ15003 741 aa18.97■□□□□ 0.63
CLCNKA-203ENST00000439316 METTL24Q5JXM2 366 aa18.97■□□□□ 0.63
CLCNKA-203ENST00000439316 AMIGO3Q86WK7 504 aa18.97■□□□□ 0.63
CLCNKA-203ENST00000439316 TBC1D10CQ8IV04 446 aa18.97■□□□□ 0.63
CLCNKA-203ENST00000439316 TIGD1Q96MW7 591 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms