RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 POLLQ9UGP5 575 aa31.25■■■□□ 2.59
LDB1-202ENST00000425280 B4E1Z4 1266 aa31.24■■■□□ 2.59
LDB1-202ENST00000425280 PRPF40AO75400 957 aaKnown RBP31.24■■■□□ 2.59
LDB1-202ENST00000425280 PDIA4P13667 645 aaKnown RBP31.24■■■□□ 2.59
LDB1-202ENST00000425280 TBC1D16Q8TBP0 767 aa31.24■■■□□ 2.59
LDB1-202ENST00000425280 NAP1L2Q9ULW6 460 aaPredicted RBP31.24■■■□□ 2.59
LDB1-202ENST00000425280 PDE6BP35913 854 aa31.23■■■□□ 2.59
LDB1-202ENST00000425280 CCT2P78371 535 aaKnown RBP31.23■■■□□ 2.59
LDB1-202ENST00000425280 SLC15A2Q16348 729 aa31.23■■■□□ 2.59
LDB1-202ENST00000425280 TMED8Q6PL24 325 aaPredicted RBP31.23■■■□□ 2.59
LDB1-202ENST00000425280 SMARCC2Q8TAQ2 1214 aa31.23■■■□□ 2.59
LDB1-202ENST00000425280 VPS37CA5D8V6 355 aaPredicted RBP31.23■■■□□ 2.59
LDB1-202ENST00000425280 FOXD4L6Q3SYB3 417 aaPredicted RBP31.23■■■□□ 2.59
LDB1-202ENST00000425280 AKNAD1Q5T1N1 836 aa31.23■■■□□ 2.59
LDB1-202ENST00000425280 FOXD4L3Q6VB84 417 aaPredicted RBP31.23■■■□□ 2.59
LDB1-202ENST00000425280 BRPF3Q9ULD4 1205 aa31.23■■■□□ 2.59
LDB1-202ENST00000425280 COL11A2P13942 1736 aaPredicted RBP31.22■■■□□ 2.59
LDB1-202ENST00000425280 CD209Q9NNX6 404 aa31.22■■■□□ 2.59
LDB1-202ENST00000425280 ATP6V0A2Q9Y487 856 aa31.22■■■□□ 2.59
LDB1-202ENST00000425280 CTDNEP1O95476 244 aa31.21■■■□□ 2.59
LDB1-202ENST00000425280 NSUN7Q8NE18 718 aaKnown RBP31.21■■■□□ 2.59
LDB1-202ENST00000425280 STAG1Q8WVM7 1258 aa31.21■■■□□ 2.59
LDB1-202ENST00000425280 NCOA5Q9HCD5 579 aaKnown RBP31.21■■■□□ 2.59
LDB1-202ENST00000425280 DDX49Q9Y6V7 483 aaKnown RBP31.21■■■□□ 2.59
LDB1-202ENST00000425280 KLHL40Q2TBA0 621 aa31.2■■■□□ 2.59
LDB1-202ENST00000425280 CNNM2Q9H8M5 875 aa31.2■■■□□ 2.59
LDB1-202ENST00000425280 KIAA1551Q9HCM1 1747 aa31.2■■■□□ 2.58
LDB1-202ENST00000425280 KLF18A0A0U1RQI7 1052 aa31.2■■■□□ 2.58
LDB1-202ENST00000425280 IL1R1P14778 569 aa31.2■■■□□ 2.58
LDB1-202ENST00000425280 PPARAQ07869 468 aa31.2■■■□□ 2.58
LDB1-202ENST00000425280 MFSD6Q6ZSS7 791 aa31.2■■■□□ 2.58
LDB1-202ENST00000425280 DZIP1Q86YF9 867 aaKnown RBP31.2■■■□□ 2.58
LDB1-202ENST00000425280 STK32BQ9NY57 414 aa31.2■■■□□ 2.58
LDB1-202ENST00000425280 SH2B2O14492 632 aaPredicted RBP31.19■■■□□ 2.58
LDB1-202ENST00000425280 IGSF3O75054 1194 aa31.19■■■□□ 2.58
LDB1-202ENST00000425280 AATFQ9NY61 560 aaKnown RBP eCLIP31.19■■■□□ 2.584e-6■■□□□ 11.7
LDB1-202ENST00000425280 ANGEL1Q9UNK9 670 aaKnown RBP31.19■■■□□ 2.58
LDB1-202ENST00000425280 LDHBP07195 334 aaKnown RBP31.18■■■□□ 2.58
LDB1-202ENST00000425280 DDX11Q96FC9 970 aa31.18■■■□□ 2.58
LDB1-202ENST00000425280 KRT23Q9C075 422 aa31.18■■■□□ 2.58
LDB1-202ENST00000425280 ATP6V1DQ9Y5K8 247 aa31.18■■■□□ 2.58
LDB1-202ENST00000425280 C6orf229H3BNL8 230 aa31.18■■■□□ 2.58
LDB1-202ENST00000425280 ALDH1B1P30837 517 aa31.18■■■□□ 2.58
LDB1-202ENST00000425280 CDC37L1Q7L3B6 337 aa31.18■■■□□ 2.58
LDB1-202ENST00000425280 ANAPC4Q9UJX5 808 aa31.18■■■□□ 2.58
LDB1-202ENST00000425280 HPS5Q9UPZ3 1129 aa31.18■■■□□ 2.58
LDB1-202ENST00000425280 CHMP4CQ96CF2 233 aa31.17■■■□□ 2.58
LDB1-202ENST00000425280 MASTLQ96GX5 879 aa31.17■■■□□ 2.58
LDB1-202ENST00000425280 TMEM87BQ96K49 555 aa31.17■■■□□ 2.58
LDB1-202ENST00000425280 TCHHQ07283 1943 aa31.17■■■□□ 2.58
LDB1-202ENST00000425280 PTPDC1A2A3K4 754 aa31.17■■■□□ 2.58
LDB1-202ENST00000425280 KDM4AO75164 1064 aa31.17■■■□□ 2.58
LDB1-202ENST00000425280 GIMAP6Q6P9H5 292 aa31.17■■■□□ 2.58
LDB1-202ENST00000425280 ZSWIM5Q9P217 1185 aa31.17■■■□□ 2.58
LDB1-202ENST00000425280 BAZ2AQ9UIF9 1905 aaKnown RBP31.16■■■□□ 2.58
LDB1-202ENST00000425280 QSER1Q2KHR3 1735 aa31.16■■■□□ 2.58
LDB1-202ENST00000425280 GOLGA8BA8MQT2 603 aa31.16■■■□□ 2.58
LDB1-202ENST00000425280 GRIK5Q16478 980 aa31.16■■■□□ 2.58
LDB1-202ENST00000425280 IGDCC4Q8TDY8 1250 aa31.16■■■□□ 2.58
LDB1-202ENST00000425280 MINDY4BA8MYZ0 360 aa31.15■■■□□ 2.58
LDB1-202ENST00000425280 HMGN5P82970 282 aaKnown RBP31.15■■■□□ 2.58
LDB1-202ENST00000425280 CRNKL1Q9BZJ0 848 aaKnown RBP31.15■■■□□ 2.58
LDB1-202ENST00000425280 RNF41Q9H4P4 317 aaPredicted RBP31.15■■■□□ 2.58
LDB1-202ENST00000425280 FAM184AQ8NB25 1140 aa31.14■■■□□ 2.58
LDB1-202ENST00000425280 DUOX1Q9NRD9 1551 aa31.14■■■□□ 2.58
LDB1-202ENST00000425280 OLFM4Q6UX06 510 aa31.13■■■□□ 2.57
LDB1-202ENST00000425280 GDPD2Q9HCC8 539 aa31.13■■■□□ 2.57
LDB1-202ENST00000425280 CNPY2Q9Y2B0 182 aa31.13■■■□□ 2.57
LDB1-202ENST00000425280 RRP12Q5JTH9 1297 aaKnown RBP31.13■■■□□ 2.57
LDB1-202ENST00000425280 STK11IPQ8N1F8 1099 aa31.13■■■□□ 2.57
LDB1-202ENST00000425280 GPT2Q8TD30 523 aa31.13■■■□□ 2.57
LDB1-202ENST00000425280 LY9Q9HBG7 655 aa31.13■■■□□ 2.57
LDB1-202ENST00000425280 SENP2Q9HC62 589 aa31.13■■■□□ 2.57
LDB1-202ENST00000425280 SMIM22K7EJ46 135 aa31.12■■■□□ 2.57
LDB1-202ENST00000425280 GSTO1P78417 241 aa31.12■■■□□ 2.57
LDB1-202ENST00000425280 TMEM67Q5HYA8 995 aa31.12■■■□□ 2.57
LDB1-202ENST00000425280 CTR9Q6PD62 1173 aa31.12■■■□□ 2.57
LDB1-202ENST00000425280 RAB11FIP4Q86YS3 637 aa31.12■■■□□ 2.57
LDB1-202ENST00000425280 TMEM87AQ8NBN3 555 aa31.12■■■□□ 2.57
LDB1-202ENST00000425280 TOMM22Q9NS69 142 aa31.12■■■□□ 2.57
LDB1-202ENST00000425280 CYP2D7A0A087X1C5 515 aa31.11■■■□□ 2.57
LDB1-202ENST00000425280 USP48Q86UV5 1035 aa31.11■■■□□ 2.57
LDB1-202ENST00000425280 FERMT3Q86UX7 667 aa31.11■■■□□ 2.57
LDB1-202ENST00000425280 C2CD5Q86YS7 1000 aa31.11■■■□□ 2.57
LDB1-202ENST00000425280 MPNDQ8N594 471 aa31.11■■■□□ 2.57
LDB1-202ENST00000425280 DCP1AQ9NPI6 582 aaPredicted RBP31.11■■■□□ 2.57
LDB1-202ENST00000425280 SGMS1Q86VZ5 419 aa31.1■■■□□ 2.57
LDB1-202ENST00000425280 ATP8A2Q9NTI2 1148 aa31.1■■■□□ 2.57
LDB1-202ENST00000425280 IFIT3O14879 490 aaKnown RBP31.1■■■□□ 2.57
LDB1-202ENST00000425280 DHX16O60231 1041 aaKnown RBP31.1■■■□□ 2.57
LDB1-202ENST00000425280 LIFRP42702 1097 aa31.1■■■□□ 2.57
LDB1-202ENST00000425280 DIXDC1Q155Q3 683 aa31.1■■■□□ 2.57
LDB1-202ENST00000425280 ZNF622Q969S3 477 aaKnown RBP eCLIP31.1■■■□□ 2.579e-11■□□□□ 10.4
LDB1-202ENST00000425280 KIF3AQ9Y496 699 aa31.1■■■□□ 2.57
LDB1-202ENST00000425280 NCLP19338 710 aaKnown RBP31.09■■■□□ 2.57
LDB1-202ENST00000425280 DNM1Q05193 864 aaKnown RBP31.09■■■□□ 2.57
LDB1-202ENST00000425280 APOA5Q6Q788 366 aa31.09■■■□□ 2.57
LDB1-202ENST00000425280 USP17L12C9JPN9 530 aa31.09■■■□□ 2.57
LDB1-202ENST00000425280 USP17L21D6R901 530 aa31.09■■■□□ 2.57
LDB1-202ENST00000425280 RIMBP2O15034 1052 aa31.09■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms