RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 MCMDC2Q4G0Z9 681 aa11.4□□□□□ -0.58
PTCHD4-202ENST00000398738 CCDC93Q567U6 631 aa11.4□□□□□ -0.58
PTCHD4-202ENST00000398738 TYW1BQ6NUM6 668 aa11.4□□□□□ -0.58
PTCHD4-202ENST00000398738 C8orf76Q96K31 380 aa11.4□□□□□ -0.58
PTCHD4-202ENST00000398738 OVOS2A0A0J9YW53 1432 aa11.4□□□□□ -0.58
PTCHD4-202ENST00000398738 OVOS2Q6IE36 1432 aa11.4□□□□□ -0.58
PTCHD4-202ENST00000398738 CPLX1O14810 134 aa11.39□□□□□ -0.59
PTCHD4-202ENST00000398738 SPTLC2O15270 562 aa11.39□□□□□ -0.59
PTCHD4-202ENST00000398738 TIMM10P62072 90 aa11.39□□□□□ -0.59
PTCHD4-202ENST00000398738 GPS2Q13227 327 aa11.39□□□□□ -0.59
PTCHD4-202ENST00000398738 SH3D19Q5HYK7 790 aa11.39□□□□□ -0.59
PTCHD4-202ENST00000398738 WWC2Q6AWC2 1192 aa11.39□□□□□ -0.59
PTCHD4-202ENST00000398738 IPO4Q8TEX9 1081 aaKnown RBP11.39□□□□□ -0.59
PTCHD4-202ENST00000398738 CPLX3Q8WVH0 158 aa11.39□□□□□ -0.59
PTCHD4-202ENST00000398738 PFKFB2O60825 505 aa11.39□□□□□ -0.59
PTCHD4-202ENST00000398738 GIGYF1O75420 1035 aaPredicted RBP11.39□□□□□ -0.59
PTCHD4-202ENST00000398738 CASQ1P31415 396 aa11.39□□□□□ -0.59
PTCHD4-202ENST00000398738 PNOCQ13519 176 aa11.39□□□□□ -0.59
PTCHD4-202ENST00000398738 UBE3BQ7Z3V4 1068 aa11.39□□□□□ -0.59
PTCHD4-202ENST00000398738 IMPACTQ9P2X3 320 aa11.39□□□□□ -0.59
PTCHD4-202ENST00000398738 PSDA5PKW4 1024 aaPredicted RBP11.39□□□□□ -0.59
PTCHD4-202ENST00000398738 HDGFP51858 240 aaKnown RBP11.39□□□□□ -0.59
PTCHD4-202ENST00000398738 MTX1Q13505 466 aa11.39□□□□□ -0.59
PTCHD4-202ENST00000398738 AIFM3Q96NN9 605 aa11.39□□□□□ -0.59
PTCHD4-202ENST00000398738 ARFGAP3Q9NP61 516 aa11.39□□□□□ -0.59
PTCHD4-202ENST00000398738 LZTFL1Q9NQ48 299 aa11.39□□□□□ -0.59
PTCHD4-202ENST00000398738 TADA3O75528 432 aa11.38□□□□□ -0.59
PTCHD4-202ENST00000398738 ALDH1L1O75891 902 aa11.38□□□□□ -0.59
PTCHD4-202ENST00000398738 ATP2B1P20020 1258 aa11.38□□□□□ -0.59
PTCHD4-202ENST00000398738 PDIA3P30101 505 aaKnown RBP11.38□□□□□ -0.59
PTCHD4-202ENST00000398738 C1orf141Q5JVX7 400 aa11.38□□□□□ -0.59
PTCHD4-202ENST00000398738 ADALQ6DHV7 355 aa11.38□□□□□ -0.59
PTCHD4-202ENST00000398738 NAA16Q6N069 864 aaPredicted RBP11.38□□□□□ -0.59
PTCHD4-202ENST00000398738 CREBRFQ8IUR6 639 aa11.38□□□□□ -0.59
PTCHD4-202ENST00000398738 LINS1Q8NG48 757 aa11.38□□□□□ -0.59
PTCHD4-202ENST00000398738 FANCLQ9NW38 375 aa11.38□□□□□ -0.59
PTCHD4-202ENST00000398738 AMOTL2Q9Y2J4 779 aa11.38□□□□□ -0.59
PTCHD4-202ENST00000398738 KDRP35968 1356 aa11.38□□□□□ -0.59
PTCHD4-202ENST00000398738 MED23Q9ULK4 1368 aa11.38□□□□□ -0.59
PTCHD4-202ENST00000398738 MOXD2PA6NHM9 499 aa11.38□□□□□ -0.59
PTCHD4-202ENST00000398738 TFRCP02786 760 aaKnown RBP11.38□□□□□ -0.59
PTCHD4-202ENST00000398738 NEXNQ0ZGT2 675 aa11.38□□□□□ -0.59
PTCHD4-202ENST00000398738 LINC00301Q8NCQ3 95 aa11.38□□□□□ -0.59
PTCHD4-202ENST00000398738 SMARCC2Q8TAQ2 1214 aa11.38□□□□□ -0.59
PTCHD4-202ENST00000398738 ZDHHC16Q969W1 377 aa11.38□□□□□ -0.59
PTCHD4-202ENST00000398738 CLIC6Q96NY7 704 aa11.38□□□□□ -0.59
PTCHD4-202ENST00000398738 PARD6BQ9BYG5 372 aa11.38□□□□□ -0.59
PTCHD4-202ENST00000398738 VPS18Q9P253 973 aa11.38□□□□□ -0.59
PTCHD4-202ENST00000398738 ZRANB2O95218 330 aaKnown RBP eCLIP11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 TBC1D8O95759 1140 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 PFKFB1P16118 471 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 PPP2R3AQ06190 1150 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 GPR153Q6NV75 609 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 TRIM65Q6PJ69 517 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 CCDC12Q8WUD4 166 aaPredicted RBP11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 PLEKHA4Q9H4M7 779 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 RCCD1A6NED2 376 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 POM121CA8CG34 1229 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 E7EWF7 191 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 DDX58O95786 925 aaKnown RBP11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 IGKV5-2P06315 115 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 FKBP4Q02790 459 aaKnown RBP eCLIP11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 WASHC4Q2M389 1173 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 LRRFIP1Q32MZ4 808 aaKnown RBP11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 TNNI3KQ59H18 835 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 CC2D1AQ6P1N0 951 aaPredicted RBP11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 NUDT18Q6ZVK8 323 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 COPS6Q7L5N1 327 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 TRMT44Q8IYL2 757 aaKnown RBP11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 TXLNBQ8N3L3 684 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 SUGCTQ9HAC7 445 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 PARP3Q9Y6F1 533 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 FPGT-TNNI3KV9GXZ4 949 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 TULP2O00295 520 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 FDPSP14324 419 aaKnown RBP11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 LTKP29376 864 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 NLRP12P59046 1061 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 NCAPHQ15003 741 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 ZNF827Q17R98 1081 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 XAGE3Q8WTP9 111 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 PPP2R2CQ9Y2T4 447 aa11.37□□□□□ -0.59
PTCHD4-202ENST00000398738 SLIT1O75093 1534 aa11.36□□□□□ -0.59
PTCHD4-202ENST00000398738 KLF18A0A0U1RQI7 1052 aa11.36□□□□□ -0.59
PTCHD4-202ENST00000398738 GOLGA8BA8MQT2 603 aa11.36□□□□□ -0.59
PTCHD4-202ENST00000398738 SYKP43405 635 aa11.36□□□□□ -0.59
PTCHD4-202ENST00000398738 POTEHQ6S545 545 aa11.36□□□□□ -0.59
PTCHD4-202ENST00000398738 TOGARAM2Q6ZUX3 1019 aa11.36□□□□□ -0.59
PTCHD4-202ENST00000398738 DHX58Q96C10 678 aa11.36□□□□□ -0.59
PTCHD4-202ENST00000398738 CCDC85AQ96PX6 553 aaPredicted RBP11.36□□□□□ -0.59
PTCHD4-202ENST00000398738 ZNF609O15014 1411 aa11.36□□□□□ -0.59
PTCHD4-202ENST00000398738 CEBPAP49715 358 aaPredicted RBP11.36□□□□□ -0.59
PTCHD4-202ENST00000398738 CLK2P49760 499 aaKnown RBP11.36□□□□□ -0.59
PTCHD4-202ENST00000398738 MTF1Q14872 753 aa11.36□□□□□ -0.59
PTCHD4-202ENST00000398738 REXO1L1PQ8IX06 675 aa11.36□□□□□ -0.59
PTCHD4-202ENST00000398738 CABLES1Q8TDN4 633 aa11.36□□□□□ -0.59
PTCHD4-202ENST00000398738 RASSF4Q9H2L5 321 aa11.36□□□□□ -0.59
PTCHD4-202ENST00000398738 ADAM21Q9UKJ8 722 aa11.36□□□□□ -0.59
PTCHD4-202ENST00000398738 HDAC5Q9UQL6 1122 aa11.36□□□□□ -0.59
PTCHD4-202ENST00000398738 ARHGAP23Q9P227 1491 aa11.36□□□□□ -0.59
PTCHD4-202ENST00000398738 KIF28PB7ZC32 967 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms