RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 ZNF569Q5MCW4 686 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 ATF7IPQ6VMQ6 1270 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 CCHCR1Q8TD31 782 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 GEMIN8Q9NWZ8 242 aaKnown RBP6.87□□□□□ -1.31
VCAN-203ENST00000343200 MIS18AQ9NYP9 233 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 TTF2Q9UNY4 1162 aaKnown RBP6.87□□□□□ -1.31
VCAN-203ENST00000343200 MDC1Q14676 2089 aaKnown RBP6.87□□□□□ -1.31
VCAN-203ENST00000343200 PTPN23Q9H3S7 1636 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 PRIM1P49642 420 aaKnown RBP6.87□□□□□ -1.31
VCAN-203ENST00000343200 UBXN1Q04323 297 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 ZNF428Q96B54 188 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 TRIM8Q9BZR9 551 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 UBA5Q9GZZ9 404 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 PUF60Q9UHX1 559 aaKnown RBP6.87□□□□□ -1.31
VCAN-203ENST00000343200 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.87□□□□□ -1.31
VCAN-203ENST00000343200 BMP15O95972 392 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 CCDC15Q0P6D6 951 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 PLCB4Q15147 1175 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 ZC3H18Q86VM9 953 aaKnown RBP6.87□□□□□ -1.31
VCAN-203ENST00000343200 TMCO5AQ8N6Q1 288 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 FAM210AQ96ND0 272 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 PPANQ9NQ55 473 aaKnown RBP6.87□□□□□ -1.31
VCAN-203ENST00000343200 DNAJC17Q9NVM6 304 aaKnown RBP6.87□□□□□ -1.31
VCAN-203ENST00000343200 FYCO1Q9BQS8 1478 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 PTGS1P23219 599 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 TMED10P49755 219 aaKnown RBP6.87□□□□□ -1.31
VCAN-203ENST00000343200 PPP2R5EQ16537 467 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 ZNF449Q6P9G9 518 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 TROVE2P10155 538 aaKnown RBP eCLIP6.87□□□□□ -1.31
VCAN-203ENST00000343200 CCDC122Q5T0U0 273 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 RGS22Q8NE09 1264 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 FLCNQ8NFG4 579 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 CACYBPQ9HB71 228 aaKnown RBP6.87□□□□□ -1.31
VCAN-203ENST00000343200 SCN3AQ9NY46 2000 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 NMIQ13287 307 aaPredicted RBP6.87□□□□□ -1.31
VCAN-203ENST00000343200 RIC3Q7Z5B4 369 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 MAK16Q9BXY0 300 aaKnown RBP6.87□□□□□ -1.31
VCAN-203ENST00000343200 TPRP12270 2363 aaKnown RBP6.87□□□□□ -1.31
VCAN-203ENST00000343200 GIMAP6Q6P9H5 292 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 CCDC186Q7Z3E2 898 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 FGD4Q96M96 766 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 KIF2CQ99661 725 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 TRIM55Q9BYV6 548 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 RAB17Q9H0T7 212 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 ARIH1Q9Y4X5 557 aaPredicted RBP6.87□□□□□ -1.31
VCAN-203ENST00000343200 ANKRD30BQ9BXX2 1392 aa6.87□□□□□ -1.31
VCAN-203ENST00000343200 LOC102724159A0A0B4J2E5 919 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 SUN1O94901 812 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 ARHGAP4P98171 946 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 PWP2Q15269 919 aaKnown RBP6.86□□□□□ -1.31
VCAN-203ENST00000343200 CYP26C1Q6V0L0 522 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 ZC3H15Q8WU90 426 aaKnown RBP6.86□□□□□ -1.31
VCAN-203ENST00000343200 PSPC1Q8WXF1 523 aaKnown RBP6.86□□□□□ -1.31
VCAN-203ENST00000343200 PARP2Q9UGN5 583 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 DBNLQ9UJU6 430 aaKnown RBP6.86□□□□□ -1.31
VCAN-203ENST00000343200 MTMR7Q9Y216 660 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 RPSAP08865 295 aaKnown RBP6.86□□□□□ -1.31
VCAN-203ENST00000343200 RNASELQ05823 741 aaKnown RBP6.86□□□□□ -1.31
VCAN-203ENST00000343200 CAPRIN2Q6IMN6 1127 aaKnown RBP6.86□□□□□ -1.31
VCAN-203ENST00000343200 KIFC3Q9BVG8 833 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 HOMER3Q9NSC5 361 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 SESN1Q9Y6P5 492 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 HARSP12081 509 aaKnown RBP6.86□□□□□ -1.31
VCAN-203ENST00000343200 E2F4Q16254 413 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 CFAP221Q4G0U5 840 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 SYT10Q6XYQ8 523 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 NLRP7Q8WX94 980 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 RGS16O15492 202 aaPredicted RBP6.86□□□□□ -1.31
VCAN-203ENST00000343200 MRPS15P82914 257 aaKnown RBP6.86□□□□□ -1.31
VCAN-203ENST00000343200 NECTIN2Q92692 538 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 FERMT3Q86UX7 667 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 NEK11Q8NG66 645 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 RILPQ96NA2 401 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 SPEF2Q9C093 1822 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 ANKRD36BQ8N2N9 1353 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 SAMD1Q6SPF0 538 aaPredicted RBP6.86□□□□□ -1.31
VCAN-203ENST00000343200 PIP4K2CQ8TBX8 421 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 HMG20BQ9P0W2 317 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 AKR1B15C9JRZ8 316 aaPredicted RBP6.86□□□□□ -1.31
VCAN-203ENST00000343200 STAT6P42226 847 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 ANGPT1Q15389 498 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 AACSQ86V21 672 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 NOX5Q96PH1 765 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 SPC25Q9HBM1 224 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 NACAE9PAV3 2078 aa6.86□□□□□ -1.31
VCAN-203ENST00000343200 A0A087WUV0 522 aaPredicted RBP6.85□□□□□ -1.31
VCAN-203ENST00000343200 ZSCAN22P10073 491 aaPredicted RBP6.85□□□□□ -1.31
VCAN-203ENST00000343200 MCF2P10911 925 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 GJB2P29033 226 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 AOPEPQ8N6M6 819 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 C1orf115Q9H7X2 142 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 CNGB3Q9NQW8 809 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 FBXO2Q9UK22 296 aaPredicted RBP6.85□□□□□ -1.31
VCAN-203ENST00000343200 LRPPRCP42704 1394 aaKnown RBP6.85□□□□□ -1.31
VCAN-203ENST00000343200 MYO7BQ6PIF6 2116 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 ACBD5Q5T8D3 534 aaPredicted RBP6.85□□□□□ -1.31
VCAN-203ENST00000343200 TCERG1LQ5VWI1 586 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 PALM2Q8IXS6 379 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 NGDNQ8NEJ9 315 aaKnown RBP6.85□□□□□ -1.31
VCAN-203ENST00000343200 P3H4Q92791 437 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms