RNA–Protein interactions for RNA: ENST00000299957.10

CASC4-201, Transcript of cancer susceptibility 4, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CASC4, Length 3,962 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-201ENST00000299957 NIP7Q9Y221 180 aaKnown RBP eCLIP15.18■□□□□ 0.02
CASC4-201ENST00000299957 CPS1P31327 1500 aa15.18■□□□□ 0.02
CASC4-201ENST00000299957 EIF3JO75822 258 aaKnown RBP15.18■□□□□ 0.02
CASC4-201ENST00000299957 TRIM21P19474 475 aaKnown RBP15.18■□□□□ 0.02
CASC4-201ENST00000299957 CASP1P29466 404 aa15.18■□□□□ 0.02
CASC4-201ENST00000299957 CDC25AP30304 524 aa15.18■□□□□ 0.02
CASC4-201ENST00000299957 PIP4K2BP78356 416 aa15.18■□□□□ 0.02
CASC4-201ENST00000299957 BRAPQ7Z569 592 aa15.18■□□□□ 0.02
CASC4-201ENST00000299957 FBXO18Q8NFZ0 1043 aa15.18■□□□□ 0.02
CASC4-201ENST00000299957 BBXQ8WY36 941 aaPredicted RBP15.18■□□□□ 0.02
CASC4-201ENST00000299957 COPRSQ9NQ92 184 aa15.18■□□□□ 0.02
CASC4-201ENST00000299957 PPP2R3AQ06190 1150 aa15.18■□□□□ 0.02
CASC4-201ENST00000299957 TTF1Q15361 905 aaPredicted RBP15.18■□□□□ 0.02
CASC4-201ENST00000299957 STOX1Q6ZVD7 989 aa15.18■□□□□ 0.02
CASC4-201ENST00000299957 NEK11Q8NG66 645 aa15.18■□□□□ 0.02
CASC4-201ENST00000299957 TDRD7Q8NHU6 1098 aaKnown RBP15.18■□□□□ 0.02
CASC4-201ENST00000299957 BABAM1Q9NWV8 329 aa15.18■□□□□ 0.02
CASC4-201ENST00000299957 NCOA3Q9Y6Q9 1424 aa15.18■□□□□ 0.02
CASC4-201ENST00000299957 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.17■□□□□ 0.02
CASC4-201ENST00000299957 LLPHQ9BRT6 129 aaKnown RBP15.17■□□□□ 0.02
CASC4-201ENST00000299957 UBA5Q9GZZ9 404 aa15.17■□□□□ 0.02
CASC4-201ENST00000299957 PHKA1P46020 1223 aa15.17■□□□□ 0.02
CASC4-201ENST00000299957 NCBP1Q09161 790 aaKnown RBP15.17■□□□□ 0.02
CASC4-201ENST00000299957 ARHGEF25Q86VW2 580 aa15.17■□□□□ 0.02
CASC4-201ENST00000299957 C10orf67Q8IYJ2 551 aa15.17■□□□□ 0.02
CASC4-201ENST00000299957 IGSF22Q8N9C0 903 aa15.17■□□□□ 0.02
CASC4-201ENST00000299957 FEZ1Q99689 392 aa15.17■□□□□ 0.02
CASC4-201ENST00000299957 ST7Q9NRC1 585 aa15.17■□□□□ 0.02
CASC4-201ENST00000299957 ELP1O95163 1332 aa15.17■□□□□ 0.02
CASC4-201ENST00000299957 EXOC5O00471 708 aa15.17■□□□□ 0.02
CASC4-201ENST00000299957 RSPH14Q9UHP6 348 aa15.17■□□□□ 0.02
CASC4-201ENST00000299957 KCNQ4P56696 695 aa15.17■□□□□ 0.02
CASC4-201ENST00000299957 NR5A1Q13285 461 aa15.17■□□□□ 0.02
CASC4-201ENST00000299957 PLCD3Q8N3E9 789 aa15.17■□□□□ 0.02
CASC4-201ENST00000299957 GTPBP4Q9BZE4 634 aaKnown RBP15.17■□□□□ 0.02
CASC4-201ENST00000299957 SEPT11Q9NVA2 429 aaKnown RBP15.17■□□□□ 0.02
CASC4-201ENST00000299957 CCDC175P0C221 793 aa15.16■□□□□ 0.02
CASC4-201ENST00000299957 NLRP12P59046 1061 aa15.16■□□□□ 0.02
CASC4-201ENST00000299957 SPTY2D1Q68D10 685 aaPredicted RBP15.16■□□□□ 0.02
CASC4-201ENST00000299957 HEATR3Q7Z4Q2 680 aa15.16■□□□□ 0.02
CASC4-201ENST00000299957 TIGD1Q96MW7 591 aa15.16■□□□□ 0.02
CASC4-201ENST00000299957 TMX4Q9H1E5 349 aaPredicted RBP15.16■□□□□ 0.02
CASC4-201ENST00000299957 GREM2Q9H772 168 aa15.16■□□□□ 0.02
CASC4-201ENST00000299957 PRKAB2O43741 272 aa15.16■□□□□ 0.02
CASC4-201ENST00000299957 GYS2P54840 703 aa15.16■□□□□ 0.02
CASC4-201ENST00000299957 RNASE9P60153 205 aaKnown RBP15.16■□□□□ 0.02
CASC4-201ENST00000299957 CRB1P82279 1406 aa15.16■□□□□ 0.02
CASC4-201ENST00000299957 RNF41Q9H4P4 317 aaPredicted RBP15.16■□□□□ 0.02
CASC4-201ENST00000299957 CEP152O94986 1710 aa15.16■□□□□ 0.02
CASC4-201ENST00000299957 CPSF1Q10570 1443 aaKnown RBP15.16■□□□□ 0.02
CASC4-201ENST00000299957 YEATS4O95619 227 aa15.16■□□□□ 0.02
CASC4-201ENST00000299957 CEP89Q96ST8 783 aa15.16■□□□□ 0.02
CASC4-201ENST00000299957 TAB2Q9NYJ8 693 aa15.16■□□□□ 0.02
CASC4-201ENST00000299957 ASAP1Q9ULH1 1129 aa15.16■□□□□ 0.02
CASC4-201ENST00000299957 CAPN2P17655 700 aa15.15■□□□□ 0.02
CASC4-201ENST00000299957 ESR2Q92731 530 aa15.15■□□□□ 0.02
CASC4-201ENST00000299957 C19orf44Q9H6X5 657 aa15.15■□□□□ 0.02
CASC4-201ENST00000299957 F8W031 263 aaPredicted RBP15.15■□□□□ 0.02
CASC4-201ENST00000299957 IL2RBP14784 551 aa15.15■□□□□ 0.02
CASC4-201ENST00000299957 UBXN1Q04323 297 aa15.15■□□□□ 0.02
CASC4-201ENST00000299957 PIK3AP1Q6ZUJ8 805 aa15.15■□□□□ 0.02
CASC4-201ENST00000299957 ZNF219Q9P2Y4 722 aaPredicted RBP15.15■□□□□ 0.02
CASC4-201ENST00000299957 CTNND2Q9UQB3 1225 aa15.15■□□□□ 0.02
CASC4-201ENST00000299957 MPHOSPH10O00566 681 aaKnown RBP15.15■□□□□ 0.02
CASC4-201ENST00000299957 FBXO38Q6PIJ6 1188 aa15.15■□□□□ 0.02
CASC4-201ENST00000299957 CACNA2D4Q7Z3S7 1137 aa15.15■□□□□ 0.02
CASC4-201ENST00000299957 CALCOCO1Q9P1Z2 691 aa15.15■□□□□ 0.02
CASC4-201ENST00000299957 RCOR1Q9UKL0 485 aa15.15■□□□□ 0.02
CASC4-201ENST00000299957 SHROOM2Q13796 1616 aa15.15■□□□□ 0.02
CASC4-201ENST00000299957 MACROD2A1Z1Q3 448 aa15.14■□□□□ 0.01
CASC4-201ENST00000299957 STAT6P42226 847 aa15.14■□□□□ 0.01
CASC4-201ENST00000299957 FAM47AQ5JRC9 791 aa15.14■□□□□ 0.01
CASC4-201ENST00000299957 CCDC191Q8NCU4 936 aa15.14■□□□□ 0.01
CASC4-201ENST00000299957 CCDC148Q8NFR7 591 aa15.14■□□□□ 0.01
CASC4-201ENST00000299957 SLF1Q9BQI6 1058 aa15.14■□□□□ 0.01
CASC4-201ENST00000299957 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.14■□□□□ 0.01
CASC4-201ENST00000299957 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.14■□□□□ 0.011e-6■■■□□ 16.4
CASC4-201ENST00000299957 CARMIL3Q8ND23 1372 aa15.14■□□□□ 0.01
CASC4-201ENST00000299957 PTPRMP28827 1452 aa15.14■□□□□ 0.01
CASC4-201ENST00000299957 ADGRB3O60242 1522 aa15.14■□□□□ 0.01
CASC4-201ENST00000299957 PPRC1Q5VV67 1664 aaKnown RBP15.14■□□□□ 0.01
CASC4-201ENST00000299957 ATP6V1AP38606 617 aa15.14■□□□□ 0.01
CASC4-201ENST00000299957 BCAMP50895 628 aa15.14■□□□□ 0.01
CASC4-201ENST00000299957 ZSCAN29Q8IWY8 852 aaPredicted RBP15.14■□□□□ 0.01
CASC4-201ENST00000299957 ZNF444Q8N0Y2 327 aaPredicted RBP15.14■□□□□ 0.01
CASC4-201ENST00000299957 LINC00301Q8NCQ3 95 aa15.14■□□□□ 0.01
CASC4-201ENST00000299957 DSCC1Q9BVC3 393 aa15.14■□□□□ 0.01
CASC4-201ENST00000299957 WDHD1O75717 1129 aaPredicted RBP15.14■□□□□ 0.01
CASC4-201ENST00000299957 SF3A3Q12874 501 aaKnown RBP eCLIP15.14■□□□□ 0.01
CASC4-201ENST00000299957 SCARF1Q14162 830 aa15.14■□□□□ 0.01
CASC4-201ENST00000299957 SPA17Q15506 151 aa15.14■□□□□ 0.01
CASC4-201ENST00000299957 TFCP2L1Q9NZI6 479 aa15.14■□□□□ 0.01
CASC4-201ENST00000299957 TMEM87AQ8NBN3 555 aa15.13■□□□□ 0.01
CASC4-201ENST00000299957 ARHGEF40Q8TER5 1519 aa15.13■□□□□ 0.01
CASC4-201ENST00000299957 KRT23Q9C075 422 aa15.13■□□□□ 0.01
CASC4-201ENST00000299957 ZCCHC17Q9NP64 241 aaKnown RBP15.13■□□□□ 0.01
CASC4-201ENST00000299957 WWC3Q9ULE0 1092 aa15.13■□□□□ 0.01
CASC4-201ENST00000299957 DENND2AQ9ULE3 1009 aa15.13■□□□□ 0.01
CASC4-201ENST00000299957 CTAGE15A4D2H0 777 aa15.13■□□□□ 0.01
CASC4-201ENST00000299957 TMEM232C9JQI7 657 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms