RNA–Protein interactions for RNA: ENST00000260810.9

TOPBP1-201, Transcript of DNA topoisomerase II binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOPBP1, Length 5,378 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-201ENST00000260810 ZSWIM6Q9HCJ5 1215 aa7.07□□□□□ -1.28
TOPBP1-201ENST00000260810 GPR108Q9NPR9 543 aa7.07□□□□□ -1.28
TOPBP1-201ENST00000260810 A0A087X0B3 334 aa7.07□□□□□ -1.28
TOPBP1-201ENST00000260810 FAM205CA6NFA0 338 aa7.07□□□□□ -1.28
TOPBP1-201ENST00000260810 FGAP02671 866 aa7.07□□□□□ -1.28
TOPBP1-201ENST00000260810 FOXP4Q8IVH2 680 aaPredicted RBP7.07□□□□□ -1.28
TOPBP1-201ENST00000260810 FGD4Q96M96 766 aa7.07□□□□□ -1.28
TOPBP1-201ENST00000260810 GBF1Q92538 1859 aa7.07□□□□□ -1.28
TOPBP1-201ENST00000260810 MYH9P35579 1960 aaKnown RBP7.06□□□□□ -1.28
TOPBP1-201ENST00000260810 DDTLA6NHG4 134 aaPredicted RBP7.06□□□□□ -1.28
TOPBP1-201ENST00000260810 MMP10P09238 476 aa7.06□□□□□ -1.28
TOPBP1-201ENST00000260810 TMEM63BQ5T3F8 832 aa7.06□□□□□ -1.28
TOPBP1-201ENST00000260810 MYH11P35749 1972 aa7.06□□□□□ -1.28
TOPBP1-201ENST00000260810 KIAA1671Q9BY89 1806 aa7.06□□□□□ -1.28
TOPBP1-201ENST00000260810 CTGFP29279 349 aa7.06□□□□□ -1.28
TOPBP1-201ENST00000260810 BOLA2Q9H3K6 86 aa7.06□□□□□ -1.28
TOPBP1-201ENST00000260810 CWC25Q9NXE8 425 aaPredicted RBP7.06□□□□□ -1.28
TOPBP1-201ENST00000260810 IQSEC3Q9UPP2 1182 aaPredicted RBP7.06□□□□□ -1.28
TOPBP1-201ENST00000260810 TSC2P49815 1807 aa7.06□□□□□ -1.28
TOPBP1-201ENST00000260810 SLC27A3Q5K4L6 730 aa7.05□□□□□ -1.28
TOPBP1-201ENST00000260810 EVPLQ92817 2033 aa7.05□□□□□ -1.28
TOPBP1-201ENST00000260810 TACC2O95359 2948 aa7.05□□□□□ -1.28
TOPBP1-201ENST00000260810 PHF14O94880 888 aa7.05□□□□□ -1.28
TOPBP1-201ENST00000260810 FSTL1Q12841 308 aa7.05□□□□□ -1.28
TOPBP1-201ENST00000260810 FAM173BQ6P4H8 233 aa7.05□□□□□ -1.28
TOPBP1-201ENST00000260810 GCC1Q96CN9 775 aa7.05□□□□□ -1.28
TOPBP1-201ENST00000260810 CDCA7Q9BWT1 371 aaPredicted RBP7.05□□□□□ -1.28
TOPBP1-201ENST00000260810 PPFIA3O75145 1194 aa7.05□□□□□ -1.28
TOPBP1-201ENST00000260810 DPY19L2P1Q6NXN4 242 aa7.05□□□□□ -1.28
TOPBP1-201ENST00000260810 API5Q9BZZ5 524 aaKnown RBP7.05□□□□□ -1.28
TOPBP1-201ENST00000260810 NIP7Q9Y221 180 aaKnown RBP eCLIP7.05□□□□□ -1.28
TOPBP1-201ENST00000260810 SERPINB2P05120 415 aa7.05□□□□□ -1.28
TOPBP1-201ENST00000260810 C1orf141Q5JVX7 400 aa7.05□□□□□ -1.28
TOPBP1-201ENST00000260810 TFCP2L1Q9NZI6 479 aa7.05□□□□□ -1.28
TOPBP1-201ENST00000260810 FAM205AQ6ZU69 1335 aa7.05□□□□□ -1.28
TOPBP1-201ENST00000260810 SLC27A2O14975 620 aa7.05□□□□□ -1.28
TOPBP1-201ENST00000260810 TROAPQ12815 778 aa7.05□□□□□ -1.28
TOPBP1-201ENST00000260810 CHST3Q7LGC8 479 aa7.05□□□□□ -1.28
TOPBP1-201ENST00000260810 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.05□□□□□ -1.28
TOPBP1-201ENST00000260810 GREB1Q4ZG55 1949 aa7.04□□□□□ -1.28
TOPBP1-201ENST00000260810 LMOD3Q0VAK6 560 aa7.04□□□□□ -1.28
TOPBP1-201ENST00000260810 C4orf32Q8N8J7 132 aa7.04□□□□□ -1.28
TOPBP1-201ENST00000260810 PDE8AO60658 829 aa7.04□□□□□ -1.28
TOPBP1-201ENST00000260810 KBTBD3Q8NAB2 608 aa7.04□□□□□ -1.28
TOPBP1-201ENST00000260810 VWCEQ96DN2 955 aa7.04□□□□□ -1.28
TOPBP1-201ENST00000260810 JAK2O60674 1132 aa7.04□□□□□ -1.28
TOPBP1-201ENST00000260810 GJA5P36382 358 aa7.04□□□□□ -1.28
TOPBP1-201ENST00000260810 DOCK6Q96HP0 2047 aa7.04□□□□□ -1.28
TOPBP1-201ENST00000260810 A0A087WWV3 80 aa7.04□□□□□ -1.28
TOPBP1-201ENST00000260810 SMARCC2Q8TAQ2 1214 aa7.04□□□□□ -1.28
TOPBP1-201ENST00000260810 SDR42E1Q8WUS8 393 aa7.04□□□□□ -1.28
TOPBP1-201ENST00000260810 ZNF292O60281 2723 aa7.04□□□□□ -1.28
TOPBP1-201ENST00000260810 SCN5AQ14524 2016 aa7.03□□□□□ -1.28
TOPBP1-201ENST00000260810 MECOMQ03112 1051 aa7.03□□□□□ -1.28
TOPBP1-201ENST00000260810 CTR9Q6PD62 1173 aa7.03□□□□□ -1.28
TOPBP1-201ENST00000260810 PSDA5PKW4 1024 aaPredicted RBP7.03□□□□□ -1.28
TOPBP1-201ENST00000260810 FZD9O00144 591 aa7.03□□□□□ -1.28
TOPBP1-201ENST00000260810 RXRBP28702 533 aa7.03□□□□□ -1.28
TOPBP1-201ENST00000260810 SCRN1Q12765 414 aa7.03□□□□□ -1.28
TOPBP1-201ENST00000260810 UPF3BQ9BZI7 483 aaKnown RBP7.03□□□□□ -1.28
TOPBP1-201ENST00000260810 APBB1O00213 710 aa7.03□□□□□ -1.28
TOPBP1-201ENST00000260810 PDS5AQ29RF7 1337 aaKnown RBP7.03□□□□□ -1.28
TOPBP1-201ENST00000260810 SURF6O75683 361 aaKnown RBP7.03□□□□□ -1.28
TOPBP1-201ENST00000260810 DPEP1P16444 411 aa7.03□□□□□ -1.28
TOPBP1-201ENST00000260810 CCDC136Q96JN2 1154 aa7.03□□□□□ -1.28
TOPBP1-201ENST00000260810 PTPRDP23468 1912 aa7.03□□□□□ -1.28
TOPBP1-201ENST00000260810 SYTL4Q96C24 671 aaPredicted RBP7.02□□□□□ -1.29
TOPBP1-201ENST00000260810 FAM163AQ96GL9 167 aaPredicted RBP7.02□□□□□ -1.29
TOPBP1-201ENST00000260810 LY9Q9HBG7 655 aa7.02□□□□□ -1.29
TOPBP1-201ENST00000260810 ZBTB12Q9Y330 459 aaPredicted RBP7.02□□□□□ -1.29
TOPBP1-201ENST00000260810 CCDC171Q6TFL3 1326 aa7.02□□□□□ -1.29
TOPBP1-201ENST00000260810 PDE6AP16499 860 aa7.02□□□□□ -1.29
TOPBP1-201ENST00000260810 RASSF7Q02833 373 aa7.02□□□□□ -1.29
TOPBP1-201ENST00000260810 CPVLQ9H3G5 476 aa7.02□□□□□ -1.29
TOPBP1-201ENST00000260810 ZNF536O15090 1300 aa7.02□□□□□ -1.29
TOPBP1-201ENST00000260810 ZBTB7AO95365 584 aa7.02□□□□□ -1.29
TOPBP1-201ENST00000260810 PLIN4Q96Q06 1357 aa7.02□□□□□ -1.29
TOPBP1-201ENST00000260810 LRRCC1Q9C099 1032 aa7.02□□□□□ -1.29
TOPBP1-201ENST00000260810 ZSWIM5Q9P217 1185 aa7.02□□□□□ -1.29
TOPBP1-201ENST00000260810 ATP6V0A2Q9Y487 856 aa7.02□□□□□ -1.29
TOPBP1-201ENST00000260810 VWA8A3KMH1 1905 aa7.02□□□□□ -1.29
TOPBP1-201ENST00000260810 CSB-PGBD3P0DP91 1061 aa7.01□□□□□ -1.29
TOPBP1-201ENST00000260810 SHMT1P34896 483 aa7.01□□□□□ -1.29
TOPBP1-201ENST00000260810 SNX21Q969T3 373 aa7.01□□□□□ -1.29
TOPBP1-201ENST00000260810 PGBD1Q96JS3 809 aa7.01□□□□□ -1.29
TOPBP1-201ENST00000260810 LRRC2Q9BYS8 371 aa7.01□□□□□ -1.29
TOPBP1-201ENST00000260810 EVA1CP58658 441 aa7.01□□□□□ -1.29
TOPBP1-201ENST00000260810 APTXQ7Z2E3 356 aaKnown RBP7.01□□□□□ -1.29
TOPBP1-201ENST00000260810 PRMT6Q96LA8 375 aaPredicted RBP7.01□□□□□ -1.29
TOPBP1-201ENST00000260810 ALDH8A1Q9H2A2 487 aaPredicted RBP7.01□□□□□ -1.29
TOPBP1-201ENST00000260810 PATJQ8NI35 1801 aa7.01□□□□□ -1.29
TOPBP1-201ENST00000260810 GADD45BO75293 160 aaPredicted RBP7.01□□□□□ -1.29
TOPBP1-201ENST00000260810 APBA3O96018 575 aa7.01□□□□□ -1.29
TOPBP1-201ENST00000260810 UBTFL1P0CB47 393 aaPredicted RBP7.01□□□□□ -1.29
TOPBP1-201ENST00000260810 SNHG28P0DPA3 235 aa7.01□□□□□ -1.29
TOPBP1-201ENST00000260810 AK2P54819 239 aa7.01□□□□□ -1.29
TOPBP1-201ENST00000260810 PRPF40BQ6NWY9 871 aaKnown RBP7.01□□□□□ -1.29
TOPBP1-201ENST00000260810 SLC30A10Q6XR72 485 aa7.01□□□□□ -1.29
TOPBP1-201ENST00000260810 ZIC5Q96T25 663 aa7.01□□□□□ -1.29
TOPBP1-201ENST00000260810 MROH7-TTC4A0A0A0MT08 1334 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms