RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 SDR42E1Q8WUS8 393 aa21.44■■□□□ 1.02
VIM-201ENST00000224237 GIMAP6Q6P9H5 292 aa21.43■■□□□ 1.02
VIM-201ENST00000224237 NECAB1Q8N987 351 aa21.43■■□□□ 1.02
VIM-201ENST00000224237 EYA3Q99504 573 aa21.43■■□□□ 1.02
VIM-201ENST00000224237 MCM4P33991 863 aa21.43■■□□□ 1.02
VIM-201ENST00000224237 AATFQ9NY61 560 aaKnown RBP eCLIP21.43■■□□□ 1.02
VIM-201ENST00000224237 DLEC1Q9Y238 1755 aa21.42■■□□□ 1.02
VIM-201ENST00000224237 FAM205AQ6ZU69 1335 aa21.42■■□□□ 1.02
VIM-201ENST00000224237 PRC1O43663 620 aa21.42■■□□□ 1.02
VIM-201ENST00000224237 CLEC17AQ6ZS10 378 aa21.42■■□□□ 1.02
VIM-201ENST00000224237 CHST3Q7LGC8 479 aa21.42■■□□□ 1.02
VIM-201ENST00000224237 GTF3C6Q969F1 213 aa21.42■■□□□ 1.02
VIM-201ENST00000224237 CRNKL1Q9BZJ0 848 aaKnown RBP21.42■■□□□ 1.02
VIM-201ENST00000224237 CNNM2Q9H8M5 875 aa21.42■■□□□ 1.02
VIM-201ENST00000224237 AKNAD1Q5T1N1 836 aa21.41■■□□□ 1.02
VIM-201ENST00000224237 C7orf43Q8WVR3 580 aa21.41■■□□□ 1.02
VIM-201ENST00000224237 DOK7Q18PE1 504 aa21.41■■□□□ 1.02
VIM-201ENST00000224237 MFSD14BQ5SR56 506 aa21.41■■□□□ 1.02
VIM-201ENST00000224237 STAG1Q8WVM7 1258 aa21.41■■□□□ 1.02
VIM-201ENST00000224237 ZDHHC9Q9Y397 364 aa21.41■■□□□ 1.02
VIM-201ENST00000224237 DDX11L8A8MPP1 907 aa21.4■■□□□ 1.02
VIM-201ENST00000224237 BRD1O95696 1058 aa21.4■■□□□ 1.02
VIM-201ENST00000224237 LDHCP07864 332 aa21.4■■□□□ 1.02
VIM-201ENST00000224237 DPEP1P16444 411 aa21.4■■□□□ 1.02
VIM-201ENST00000224237 GJB2P29033 226 aa21.4■■□□□ 1.02
VIM-201ENST00000224237 ANTXR2P58335 489 aa21.4■■□□□ 1.02
VIM-201ENST00000224237 PPARAQ07869 468 aa21.4■■□□□ 1.02
VIM-201ENST00000224237 STK3Q13188 491 aa21.4■■□□□ 1.02
VIM-201ENST00000224237 MFSD6Q6ZSS7 791 aa21.4■■□□□ 1.02
VIM-201ENST00000224237 CERS3Q8IU89 383 aa21.4■■□□□ 1.02
VIM-201ENST00000224237 RNF41Q9H4P4 317 aaPredicted RBP21.4■■□□□ 1.02
VIM-201ENST00000224237 ANAPC4Q9UJX5 808 aa21.4■■□□□ 1.02
VIM-201ENST00000224237 NEDD4P46934 1319 aa21.4■■□□□ 1.02
VIM-201ENST00000224237 PSDA5PKW4 1024 aaPredicted RBP21.39■■□□□ 1.02
VIM-201ENST00000224237 EVCP57679 992 aa21.39■■□□□ 1.02
VIM-201ENST00000224237 CTDSPL2Q05D32 466 aa21.39■■□□□ 1.02
VIM-201ENST00000224237 APOBRQ0VD83 1088 aa21.39■■□□□ 1.02
VIM-201ENST00000224237 ZNF274Q96GC6 653 aaPredicted RBP21.39■■□□□ 1.02
VIM-201ENST00000224237 KRT23Q9C075 422 aa21.39■■□□□ 1.02
VIM-201ENST00000224237 MTFR1LQ9H019 292 aa21.39■■□□□ 1.02
VIM-201ENST00000224237 ATP8A2Q9NTI2 1148 aa21.39■■□□□ 1.02
VIM-201ENST00000224237 KIF13BQ9NQT8 1826 aa21.39■■□□□ 1.02
VIM-201ENST00000224237 PFKFB2O60825 505 aa21.39■■□□□ 1.01
VIM-201ENST00000224237 BAG3O95817 575 aa21.39■■□□□ 1.01
VIM-201ENST00000224237 KCNA3P22001 575 aa21.39■■□□□ 1.01
VIM-201ENST00000224237 CC2D2BQ6DHV5 1058 aa21.39■■□□□ 1.01
VIM-201ENST00000224237 SNED1Q8TER0 1413 aa21.39■■□□□ 1.01
VIM-201ENST00000224237 NOL10Q9BSC4 688 aaKnown RBP21.39■■□□□ 1.01
VIM-201ENST00000224237 MYH2Q9UKX2 1941 aa21.38■■□□□ 1.01
VIM-201ENST00000224237 MROH7-TTC4A0A0A0MT08 1334 aa21.38■■□□□ 1.01
VIM-201ENST00000224237 WDR33Q9C0J8 1336 aaKnown RBP21.38■■□□□ 1.01
VIM-201ENST00000224237 B4E1Z4 1266 aa21.38■■□□□ 1.01
VIM-201ENST00000224237 C21orf2O43822 256 aa21.38■■□□□ 1.01
VIM-201ENST00000224237 PDIA4P13667 645 aaKnown RBP21.38■■□□□ 1.01
VIM-201ENST00000224237 DEKP35659 375 aaKnown RBP21.38■■□□□ 1.01
VIM-201ENST00000224237 SLF2Q8IX21 1173 aa21.38■■□□□ 1.01
VIM-201ENST00000224237 CHMP4CQ96CF2 233 aa21.38■■□□□ 1.01
VIM-201ENST00000224237 SUGT1Q9Y2Z0 365 aa21.38■■□□□ 1.01
VIM-201ENST00000224237 BAZ2AQ9UIF9 1905 aaKnown RBP21.38■■□□□ 1.01
VIM-201ENST00000224237 GTF2IP78347 998 aa21.37■■□□□ 1.01
VIM-201ENST00000224237 DIXDC1Q155Q3 683 aa21.37■■□□□ 1.01
VIM-201ENST00000224237 TMEM87BQ96K49 555 aa21.37■■□□□ 1.01
VIM-201ENST00000224237 RTFDC1Q9BY42 306 aaPredicted RBP21.37■■□□□ 1.01
VIM-201ENST00000224237 MINDY4BA8MYZ0 360 aa21.37■■□□□ 1.01
VIM-201ENST00000224237 G3V3G9 751 aa21.37■■□□□ 1.01
VIM-201ENST00000224237 BAG4O95429 457 aaKnown RBP21.37■■□□□ 1.01
VIM-201ENST00000224237 PPP4CP60510 307 aa21.37■■□□□ 1.01
VIM-201ENST00000224237 SCRN1Q12765 414 aa21.37■■□□□ 1.01
VIM-201ENST00000224237 DCAF8Q5TAQ9 597 aa21.37■■□□□ 1.01
VIM-201ENST00000224237 LLPHQ9BRT6 129 aaKnown RBP21.37■■□□□ 1.01
VIM-201ENST00000224237 DCP1AQ9NPI6 582 aaPredicted RBP21.37■■□□□ 1.01
VIM-201ENST00000224237 ANGEL1Q9UNK9 670 aaKnown RBP21.37■■□□□ 1.01
VIM-201ENST00000224237 LAMB1P07942 1786 aa21.36■■□□□ 1.01
VIM-201ENST00000224237 SYT1P21579 422 aa21.36■■□□□ 1.01
VIM-201ENST00000224237 POLD1P28340 1107 aa21.36■■□□□ 1.01
VIM-201ENST00000224237 CYB5R4Q7L1T6 521 aa21.36■■□□□ 1.01
VIM-201ENST00000224237 PODNQ7Z5L7 613 aa21.36■■□□□ 1.01
VIM-201ENST00000224237 TTLL6Q8N841 843 aa21.36■■□□□ 1.01
VIM-201ENST00000224237 FBXW7Q969H0 707 aa21.36■■□□□ 1.01
VIM-201ENST00000224237 DBNDD1Q9H9R9 158 aa21.36■■□□□ 1.01
VIM-201ENST00000224237 ARPP21Q9UBL0 812 aaPredicted RBP21.36■■□□□ 1.01
VIM-201ENST00000224237 GOLGA6L22H0YM25 854 aa21.35■■□□□ 1.01
VIM-201ENST00000224237 STX6O43752 255 aa21.35■■□□□ 1.01
VIM-201ENST00000224237 PCP11498 1178 aaKnown RBP21.35■■□□□ 1.01
VIM-201ENST00000224237 PTMSP20962 102 aa21.35■■□□□ 1.01
VIM-201ENST00000224237 PDIA3P30101 505 aaKnown RBP21.35■■□□□ 1.01
VIM-201ENST00000224237 NKX2-3Q8TAU0 364 aa21.35■■□□□ 1.01
VIM-201ENST00000224237 PDCP20941 246 aa21.35■■□□□ 1.01
VIM-201ENST00000224237 GRIPAP1Q4V328 841 aa21.35■■□□□ 1.01
VIM-201ENST00000224237 CTR9Q6PD62 1173 aa21.35■■□□□ 1.01
VIM-201ENST00000224237 FAM163AQ96GL9 167 aaPredicted RBP21.35■■□□□ 1.01
VIM-201ENST00000224237 MXD3Q9BW11 206 aa21.35■■□□□ 1.01
VIM-201ENST00000224237 SH2B2O14492 632 aaPredicted RBP21.34■■□□□ 1.01
VIM-201ENST00000224237 KDM4AO75164 1064 aa21.34■■□□□ 1.01
VIM-201ENST00000224237 MTA3Q9BTC8 594 aa21.34■■□□□ 1.01
VIM-201ENST00000224237 GPHNQ9NQX3 736 aaPredicted RBP21.34■■□□□ 1.01
VIM-201ENST00000224237 NAP1L2Q9ULW6 460 aaPredicted RBP21.34■■□□□ 1.01
VIM-201ENST00000224237 TACC3Q9Y6A5 838 aa21.34■■□□□ 1.01
VIM-201ENST00000224237 KLF18A0A0U1RQI7 1052 aa21.33■■□□□ 1.01
VIM-201ENST00000224237 SBK1Q52WX2 424 aa21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms