RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Gm6583E9Q8Z1 469 aa13.31□□□□□ -0.28
Trim56-201ENSMUST00000054384 Bst2Q8R2Q8 172 aa13.31□□□□□ -0.28
Trim56-201ENSMUST00000054384 Fam114a2Q8VE88 497 aa13.31□□□□□ -0.28
Trim56-201ENSMUST00000054384 Golga5Q9QYE6 729 aa13.31□□□□□ -0.28
Trim56-201ENSMUST00000054384 Zranb1Q7M760 708 aa13.31□□□□□ -0.28
Trim56-201ENSMUST00000054384 Mrps25Q9D125 171 aaKnown RBP13.31□□□□□ -0.28
Trim56-201ENSMUST00000054384 Gm10093D3YYI8 482 aa13.31□□□□□ -0.28
Trim56-201ENSMUST00000054384 Hdac1O09106 482 aaKnown RBP13.31□□□□□ -0.28
Trim56-201ENSMUST00000054384 Tex2Q6ZPJ0 1128 aaKnown RBP13.31□□□□□ -0.28
Trim56-201ENSMUST00000054384 Rsad2Q8CBB9 362 aa13.31□□□□□ -0.28
Trim56-201ENSMUST00000054384 MmeQ61391 750 aa13.3□□□□□ -0.28
Trim56-201ENSMUST00000054384 FanclQ9CR14 375 aa13.3□□□□□ -0.28
Trim56-201ENSMUST00000054384 DroshaQ5HZJ0 1373 aaKnown RBP13.3□□□□□ -0.28
Trim56-201ENSMUST00000054384 Gm4758L7N258 96 aa13.3□□□□□ -0.28
Trim56-201ENSMUST00000054384 Ankrd13dQ6PD24 605 aa13.3□□□□□ -0.28
Trim56-201ENSMUST00000054384 Gm5624F6ZZG8 207 aa13.3□□□□□ -0.28
Trim56-201ENSMUST00000054384 Sde2Q8K1J5 448 aaKnown RBP13.3□□□□□ -0.28
Trim56-201ENSMUST00000054384 Lonp2Q9DBN5 852 aa13.3□□□□□ -0.28
Trim56-201ENSMUST00000054384 Q3TYL0 343 aa13.3□□□□□ -0.28
Trim56-201ENSMUST00000054384 Ifit2Q64112 472 aa13.3□□□□□ -0.28
Trim56-201ENSMUST00000054384 Atp2a3Q64518 1038 aa13.3□□□□□ -0.28
Trim56-201ENSMUST00000054384 Ccdc28aQ8CEI3 192 aa13.3□□□□□ -0.28
Trim56-201ENSMUST00000054384 Gbp5Q8CFB4 590 aa13.3□□□□□ -0.28
Trim56-201ENSMUST00000054384 Spats2Q8K1N4 545 aaKnown RBP13.3□□□□□ -0.28
Trim56-201ENSMUST00000054384 Plcd1Q8R3B1 756 aa13.3□□□□□ -0.28
Trim56-201ENSMUST00000054384 Cyb5rlB1AS42 316 aa13.3□□□□□ -0.28
Trim56-201ENSMUST00000054384 Abtb2Q7TQI7 1024 aa13.3□□□□□ -0.28
Trim56-201ENSMUST00000054384 Sh2b1Q91ZM2 756 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 Abcc4E9Q236 1325 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 Taf7Q9R1C0 341 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 Kif22Q3V300 660 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 Rexo1Q7TT28 1213 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 ParnQ8VDG3 624 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 Drc3Q9D5E4 523 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 Gcc2Q8CHG3 1679 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 IntuQ059U7 942 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 Acnat2Q8BGG9 420 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 Ufl1Q8CCJ3 793 aaKnown RBP13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 Acot11Q8VHQ9 594 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 Farp2Q91VS8 1065 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 Fam213aQ9CYH2 218 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 Prr16A3KMN5 304 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 ZfaP23607 742 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 Frat1P70339 274 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 Pde1bQ01065 535 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 Aldh8a1Q8BH00 487 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 Atp12aQ9Z1W8 1035 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 Sos2Q02384 1333 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 Duxf3A0A0N4SV92 674 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 Tmed1Q3V009 227 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 Nek11Q8C0Q4 628 aa13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 Xab2Q9DCD2 855 aaKnown RBP13.29□□□□□ -0.28
Trim56-201ENSMUST00000054384 Eef1bO70251 225 aaKnown RBP13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Pja2Q80U04 707 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Bloc1s4Q8VED2 215 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Rsph3bQ9DA80 389 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Rprd2Q6NXI6 1469 aaKnown RBP13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Krt18P05784 423 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Arid3aQ62431 601 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Nucks1Q80XU3 234 aaKnown RBP13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Tti2Q8BGV4 512 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Mrc2Q64449 1479 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Cavin2Q63918 418 aaKnown RBP13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Cplx3Q8R1B5 158 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Mapkbp1Q6NS57 1503 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Btn2a2A4QPC6 514 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Cep57Q8CEE0 500 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Pak2Q8CIN4 524 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 HscbQ8K3A0 234 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Irx4Q9QY61 515 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Mcmdc2E9Q956 681 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 AdpgkQ8VDL4 496 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 GckrQ91X44 587 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Ndufa8Q9DCJ5 172 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Elf2Q9JHC9 593 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Rps6ka2Q9WUT3 733 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Slc27a3O88561 667 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Gm28047Q3US59 414 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Ncaph2Q8BSP2 607 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Olfm5Q8BU90 496 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Thap12Q9CUX1 758 aa13.28□□□□□ -0.28
Trim56-201ENSMUST00000054384 Eme2Q56A04 373 aa13.27□□□□□ -0.28
Trim56-201ENSMUST00000054384 Sept3Q9Z1S5 350 aa13.27□□□□□ -0.28
Trim56-201ENSMUST00000054384 Parp1P11103 1013 aaKnown RBP13.27□□□□□ -0.28
Trim56-201ENSMUST00000054384 Ccdc160Q3UYG1 323 aa13.27□□□□□ -0.28
Trim56-201ENSMUST00000054384 Gzf1Q4VBD9 706 aa13.27□□□□□ -0.28
Trim56-201ENSMUST00000054384 9230110C19RikQ8CC70 267 aa13.27□□□□□ -0.28
Trim56-201ENSMUST00000054384 Plcd3Q8K2J0 785 aa13.27□□□□□ -0.28
Trim56-201ENSMUST00000054384 Ctnna3Q65CL1 895 aa13.27□□□□□ -0.28
Trim56-201ENSMUST00000054384 Zkscan5Q9Z1D8 819 aa13.27□□□□□ -0.28
Trim56-201ENSMUST00000054384 Kif1bQ60575 1816 aaKnown RBP13.27□□□□□ -0.29
Trim56-201ENSMUST00000054384 Exoc3l2D3YUP5 789 aa13.27□□□□□ -0.29
Trim56-201ENSMUST00000054384 Erich2E9Q1A6 463 aa13.27□□□□□ -0.29
Trim56-201ENSMUST00000054384 Mybl2P48972 704 aa13.27□□□□□ -0.29
Trim56-201ENSMUST00000054384 Ubash3aQ3V3E1 624 aa13.27□□□□□ -0.29
Trim56-201ENSMUST00000054384 Eid1Q9DCR4 169 aa13.27□□□□□ -0.29
Trim56-201ENSMUST00000054384 Pak1O88643 545 aa13.27□□□□□ -0.29
Trim56-201ENSMUST00000054384 U2af2P26369 475 aaKnown RBP13.27□□□□□ -0.29
Trim56-201ENSMUST00000054384 Pls1Q3V0K9 630 aa13.27□□□□□ -0.29
Trim56-201ENSMUST00000054384 Gas2l2Q5SSG4 860 aa13.27□□□□□ -0.29
Retrieved 100 of 22,080 RNA–protein pairs in 18.7 ms