RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 TMEM14BQ9NUH8 114 aa8.98□□□□□ -0.97
CLN3-244ENST00000636147 C15orf65H3BRN8 121 aa8.98□□□□□ -0.97
CLN3-244ENST00000636147 NTN3O00634 580 aaPredicted RBP8.98□□□□□ -0.97
CLN3-244ENST00000636147 ESDP10768 282 aa8.98□□□□□ -0.97
CLN3-244ENST00000636147 TMEM249Q2WGJ8 235 aa8.98□□□□□ -0.97
CLN3-244ENST00000636147 C2orf83Q53S99 150 aa8.98□□□□□ -0.97
CLN3-244ENST00000636147 ATP5L2Q7Z4Y8 100 aa8.98□□□□□ -0.97
CLN3-244ENST00000636147 FAM90A1Q86YD7 464 aa8.98□□□□□ -0.97
CLN3-244ENST00000636147 TMEM160Q9NX00 188 aa8.98□□□□□ -0.97
CLN3-244ENST00000636147 ZNF257Q9Y2Q1 563 aa8.98□□□□□ -0.97
CLN3-244ENST00000636147 KIR3DS1Q14943 382 aa8.97□□□□□ -0.97
CLN3-244ENST00000636147 SP5Q6BEB4 398 aaPredicted RBP8.97□□□□□ -0.97
CLN3-244ENST00000636147 LTBP2Q14767 1821 aa8.97□□□□□ -0.97
CLN3-244ENST00000636147 BDP1A6H8Y1 2624 aa8.97□□□□□ -0.97
CLN3-244ENST00000636147 SRRM4A7MD48 611 aaKnown RBP8.97□□□□□ -0.97
CLN3-244ENST00000636147 PROP1O75360 226 aa8.97□□□□□ -0.97
CLN3-244ENST00000636147 IL4P05112 153 aa8.97□□□□□ -0.97
CLN3-244ENST00000636147 KIR2DL2P43627 348 aaPredicted RBP8.97□□□□□ -0.97
CLN3-244ENST00000636147 SSBP2P81877 361 aaPredicted RBP8.97□□□□□ -0.97
CLN3-244ENST00000636147 C1orf210Q8IVY1 113 aa8.97□□□□□ -0.97
CLN3-244ENST00000636147 PPIAL4EA0A075B759 164 aa8.97□□□□□ -0.97
CLN3-244ENST00000636147 IGKV1OR2-108A0A075B7D4 117 aa8.97□□□□□ -0.97
CLN3-244ENST00000636147 IGHV1-18A0A0C4DH31 117 aa8.97□□□□□ -0.97
CLN3-244ENST00000636147 PRR33A8MZF0 331 aa8.97□□□□□ -0.97
CLN3-244ENST00000636147 NCR2O95944 276 aa8.97□□□□□ -0.97
CLN3-244ENST00000636147 ARMS2P0C7Q2 107 aa8.97□□□□□ -0.97
CLN3-244ENST00000636147 PPIAL4FP0DN26 164 aa8.97□□□□□ -0.97
CLN3-244ENST00000636147 RASL11AQ6T310 242 aa8.97□□□□□ -0.97
CLN3-244ENST00000636147 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.97□□□□□ -0.97
CLN3-244ENST00000636147 FMC1Q96HJ9 113 aa8.97□□□□□ -0.97
CLN3-244ENST00000636147 VPS13AQ96RL7 3174 aa8.96□□□□□ -0.97
CLN3-244ENST00000636147 TCRAP04437 139 aa8.96□□□□□ -0.97
CLN3-244ENST00000636147 RPL11P62913 178 aaKnown RBP8.96□□□□□ -0.97
CLN3-244ENST00000636147 SEC11AP67812 179 aa8.96□□□□□ -0.97
CLN3-244ENST00000636147 TMEM108Q6UXF1 575 aa8.96□□□□□ -0.97
CLN3-244ENST00000636147 SCGB1D4Q6XE38 83 aa8.96□□□□□ -0.97
CLN3-244ENST00000636147 FER1L6-AS1Q8NA97 138 aa8.96□□□□□ -0.97
CLN3-244ENST00000636147 OR1N2Q8NGR9 330 aa8.96□□□□□ -0.97
CLN3-244ENST00000636147 ONECUT1Q9UBC0 465 aa8.96□□□□□ -0.97
CLN3-244ENST00000636147 CPAMD8Q8IZJ3 1885 aa8.96□□□□□ -0.97
CLN3-244ENST00000636147 LOC107984156A0A0G2JMH3 177 aa8.96□□□□□ -0.98
CLN3-244ENST00000636147 GOSR1O95249 250 aa8.96□□□□□ -0.98
CLN3-244ENST00000636147 CLEC3BP05452 202 aa8.96□□□□□ -0.98
CLN3-244ENST00000636147 ATP5IP56385 69 aaPredicted RBP8.96□□□□□ -0.98
CLN3-244ENST00000636147 ARL17AQ8IVW1 177 aa8.96□□□□□ -0.98
CLN3-244ENST00000636147 HIST1H4GQ99525 98 aa8.96□□□□□ -0.98
CLN3-244ENST00000636147 MS4A6AQ9H2W1 248 aa8.96□□□□□ -0.98
CLN3-244ENST00000636147 FBXL15Q9H469 300 aa8.96□□□□□ -0.98
CLN3-244ENST00000636147 D6R8Y8 96 aa8.96□□□□□ -0.98
CLN3-244ENST00000636147 SCGB1C2P0DMR2 95 aa8.96□□□□□ -0.98
CLN3-244ENST00000636147 CTRLP40313 264 aa8.96□□□□□ -0.98
CLN3-244ENST00000636147 C11orf53Q8IXP5 236 aa8.96□□□□□ -0.98
CLN3-244ENST00000636147 FDCSPQ8NFU4 85 aa8.96□□□□□ -0.98
CLN3-244ENST00000636147 SLC25A2Q9BXI2 301 aa8.96□□□□□ -0.98
CLN3-244ENST00000636147 IGHV3OR16-13A0A075B7E8 117 aa8.95□□□□□ -0.98
CLN3-244ENST00000636147 IGHV3-74A0A0B4J1X5 117 aa8.95□□□□□ -0.98
CLN3-244ENST00000636147 SMKR1H3BMG3 65 aa8.95□□□□□ -0.98
CLN3-244ENST00000636147 P0C879 139 aa8.95□□□□□ -0.98
CLN3-244ENST00000636147 PPIFP30405 207 aaKnown RBP8.95□□□□□ -0.98
CLN3-244ENST00000636147 IFI27P40305 119 aaPredicted RBP8.95□□□□□ -0.98
CLN3-244ENST00000636147 RPUSD1Q9UJJ7 312 aaKnown RBP8.95□□□□□ -0.98
CLN3-244ENST00000636147 SOX21Q9Y651 276 aaPredicted RBP8.95□□□□□ -0.98
CLN3-244ENST00000636147 M0R3E3 92 aa8.95□□□□□ -0.98
CLN3-244ENST00000636147 TAX1BP3O14907 124 aa8.95□□□□□ -0.98
CLN3-244ENST00000636147 UTF1Q5T230 341 aa8.95□□□□□ -0.98
CLN3-244ENST00000636147 LOC105371242A0A075B767 164 aa8.95□□□□□ -0.98
CLN3-244ENST00000636147 GLRXP35754 106 aa8.95□□□□□ -0.98
CLN3-244ENST00000636147 CFHR2P36980 270 aa8.95□□□□□ -0.98
CLN3-244ENST00000636147 FAM27E3Q08E93 113 aa8.95□□□□□ -0.98
CLN3-244ENST00000636147 SRSF9Q13242 221 aaKnown RBP eCLIP8.95□□□□□ -0.98
CLN3-244ENST00000636147 UBALD2Q8IYN6 164 aa8.95□□□□□ -0.98
CLN3-244ENST00000636147 ORMDL3Q8N138 153 aa8.95□□□□□ -0.98
CLN3-244ENST00000636147 MTURNQ8N3F0 131 aa8.95□□□□□ -0.98
CLN3-244ENST00000636147 ATG2AQ2TAZ0 1938 aa8.95□□□□□ -0.98
CLN3-244ENST00000636147 CIDEAO60543 219 aa8.94□□□□□ -0.98
CLN3-244ENST00000636147 S100A4P26447 101 aaKnown RBP8.94□□□□□ -0.98
CLN3-244ENST00000636147 TMPRSS3P57727 454 aa8.94□□□□□ -0.98
CLN3-244ENST00000636147 C1orf185Q5T7R7 199 aa8.94□□□□□ -0.98
CLN3-244ENST00000636147 FOXC2Q99958 501 aa8.94□□□□□ -0.98
CLN3-244ENST00000636147 SZT2Q5T011 3432 aa8.94□□□□□ -0.98
CLN3-244ENST00000636147 DSCAML1Q8TD84 2053 aa8.94□□□□□ -0.98
CLN3-244ENST00000636147 K7EP13 123 aa8.94□□□□□ -0.98
CLN3-244ENST00000636147 CD40P25942 277 aa8.94□□□□□ -0.98
CLN3-244ENST00000636147 TIMM23BQ5SRD1 257 aa8.94□□□□□ -0.98
CLN3-244ENST00000636147 SAMD5Q5TGI4 173 aa8.94□□□□□ -0.98
CLN3-244ENST00000636147 DEFB125Q8N687 156 aa8.94□□□□□ -0.98
CLN3-244ENST00000636147 OR5AN1Q8NGI8 311 aa8.94□□□□□ -0.98
CLN3-244ENST00000636147 MYOZ3Q8TDC0 251 aa8.94□□□□□ -0.98
CLN3-244ENST00000636147 TMEM186Q96B77 213 aa8.94□□□□□ -0.98
CLN3-244ENST00000636147 IFI27L1Q96BM0 104 aa8.94□□□□□ -0.98
CLN3-244ENST00000636147 H3BVH4 76 aa8.94□□□□□ -0.98
CLN3-244ENST00000636147 MC5RP33032 325 aa8.94□□□□□ -0.98
CLN3-244ENST00000636147 BCL6BQ8N143 479 aaPredicted RBP8.94□□□□□ -0.98
CLN3-244ENST00000636147 MAP1LC3AQ9H492 121 aa8.94□□□□□ -0.98
CLN3-244ENST00000636147 SPG11Q96JI7 2443 aa8.93□□□□□ -0.98
CLN3-244ENST00000636147 IGHV3-23P01764 117 aa8.93□□□□□ -0.98
CLN3-244ENST00000636147 EVI2AP22794 236 aa8.93□□□□□ -0.98
CLN3-244ENST00000636147 GDF5OSQ5U4N7 250 aa8.93□□□□□ -0.98
CLN3-244ENST00000636147 AMN1Q8IY45 258 aa8.93□□□□□ -0.98
CLN3-244ENST00000636147 RABAC1Q9UI14 185 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 158.7 ms