RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 TMEM252Q8N6L7 170 aa15.39■□□□□ 0.05
CLN3-240ENST00000631023 TMEM217Q8N7C4 229 aa15.39■□□□□ 0.05
CLN3-240ENST00000631023 NBEAL2Q6ZNJ1 2754 aa15.39■□□□□ 0.05
CLN3-240ENST00000631023 E5RGE8 158 aa15.38■□□□□ 0.05
CLN3-240ENST00000631023 K7EQG2 157 aa15.38■□□□□ 0.05
CLN3-240ENST00000631023 ORM2P19652 201 aa15.38■□□□□ 0.05
CLN3-240ENST00000631023 LRRC37A5PQ49AS3 106 aa15.38■□□□□ 0.05
CLN3-240ENST00000631023 RCHY1Q96PM5 261 aa15.38■□□□□ 0.05
CLN3-240ENST00000631023 CITED4Q96RK1 184 aa15.38■□□□□ 0.05
CLN3-240ENST00000631023 TMEM147Q9BVK8 224 aa15.38■□□□□ 0.05
CLN3-240ENST00000631023 MAP6D1Q9H9H5 199 aa15.38■□□□□ 0.05
CLN3-240ENST00000631023 ALG5Q9Y673 324 aa15.38■□□□□ 0.05
CLN3-240ENST00000631023 AGRNO00468 2067 aa15.38■□□□□ 0.05
CLN3-240ENST00000631023 TMEM182Q6ZP80 229 aaPredicted RBP15.37■□□□□ 0.05
CLN3-240ENST00000631023 APRG1Q8IVJ8 170 aa15.37■□□□□ 0.05
CLN3-240ENST00000631023 OR1B1Q8NGR6 318 aa15.37■□□□□ 0.05
CLN3-240ENST00000631023 SLC25A31Q9H0C2 315 aa15.37■□□□□ 0.05
CLN3-240ENST00000631023 RAB31Q13636 194 aa15.36■□□□□ 0.05
CLN3-240ENST00000631023 RGS21Q2M5E4 152 aa15.36■□□□□ 0.05
CLN3-240ENST00000631023 S100A7AQ86SG5 101 aa15.36■□□□□ 0.05
CLN3-240ENST00000631023 OR8I2Q8N0Y5 310 aa15.36■□□□□ 0.05
CLN3-240ENST00000631023 DCANP1Q8TF63 244 aa15.36■□□□□ 0.05
CLN3-240ENST00000631023 PPP1R1CQ8WVI7 109 aa15.36■□□□□ 0.05
CLN3-240ENST00000631023 NRN1Q9NPD7 142 aa15.36■□□□□ 0.05
CLN3-240ENST00000631023 UQCC1Q9NVA1 299 aa15.36■□□□□ 0.05
CLN3-240ENST00000631023 IGSF23A1L1A6 192 aa15.36■□□□□ 0.05
CLN3-240ENST00000631023 LINC00869P0C866 280 aa15.36■□□□□ 0.05
CLN3-240ENST00000631023 PET100P0DJ07 73 aa15.36■□□□□ 0.05
CLN3-240ENST00000631023 APOC4P55056 127 aa15.36■□□□□ 0.05
CLN3-240ENST00000631023 DEFB131AP59861 70 aa15.36■□□□□ 0.05
CLN3-240ENST00000631023 RAP2BP61225 183 aa15.36■□□□□ 0.05
CLN3-240ENST00000631023 ATP6V1FQ16864 119 aa15.36■□□□□ 0.05
CLN3-240ENST00000631023 ZNF546Q86UE3 836 aa15.36■□□□□ 0.05
CLN3-240ENST00000631023 STAB2Q8WWQ8 2551 aa15.36■□□□□ 0.05
CLN3-240ENST00000631023 AGPAT2O15120 278 aa15.35■□□□□ 0.05
CLN3-240ENST00000631023 HYPMO75409 117 aa15.35■□□□□ 0.05
CLN3-240ENST00000631023 PLP1P60201 277 aa15.35■□□□□ 0.05
CLN3-240ENST00000631023 STPG3Q8N7X2 389 aa15.35■□□□□ 0.05
CLN3-240ENST00000631023 OR5AC2Q9NZP5 309 aa15.35■□□□□ 0.05
CLN3-240ENST00000631023 TENM3Q9P273 2699 aa15.35■□□□□ 0.05
CLN3-240ENST00000631023 PXDC1Q5TGL8 231 aa15.34■□□□□ 0.05
CLN3-240ENST00000631023 WWC2-AS2Q96NR7 200 aa15.34■□□□□ 0.05
CLN3-240ENST00000631023 SEPSECSQ9HD40 501 aaKnown RBP15.34■□□□□ 0.05
CLN3-240ENST00000631023 HIGD1AQ9Y241 93 aa15.34■□□□□ 0.05
CLN3-240ENST00000631023 ZNF98A6NK75 572 aa15.33■□□□□ 0.05
CLN3-240ENST00000631023 MPC2O95563 127 aa15.33■□□□□ 0.05
CLN3-240ENST00000631023 OR5G3P0C626 314 aa15.33■□□□□ 0.05
CLN3-240ENST00000631023 ZNF688P0C7X2 276 aa15.33■□□□□ 0.05
CLN3-240ENST00000631023 SNRPD3P62318 126 aaKnown RBP15.33■□□□□ 0.05
CLN3-240ENST00000631023 VWC2Q2TAL6 325 aa15.33■□□□□ 0.05
CLN3-240ENST00000631023 FAM24BQ8N5W8 94 aa15.33■□□□□ 0.05
CLN3-240ENST00000631023 MED28Q9H204 178 aa15.33■□□□□ 0.05
CLN3-240ENST00000631023 SLC25A22Q9H936 323 aa15.33■□□□□ 0.05
CLN3-240ENST00000631023 DOK5Q9P104 306 aa15.33■□□□□ 0.05
CLN3-240ENST00000631023 HUWE1Q7Z6Z7 4374 aaKnown RBP15.33■□□□□ 0.04
CLN3-240ENST00000631023 KIR2DL5BA0A0G2JN68 375 aa15.32■□□□□ 0.04
CLN3-240ENST00000631023 KIR2DL5BA0A0G2JPC4 375 aa15.32■□□□□ 0.04
CLN3-240ENST00000631023 H0YIZ8 118 aa15.32■□□□□ 0.04
CLN3-240ENST00000631023 UBE2CO00762 179 aa15.32■□□□□ 0.04
CLN3-240ENST00000631023 ZNF124Q15973 351 aa15.32■□□□□ 0.04
CLN3-240ENST00000631023 KIR2DL5AQ8N109 375 aa15.32■□□□□ 0.04
CLN3-240ENST00000631023 KIR2DL5BQ8NHK3 375 aa15.32■□□□□ 0.04
CLN3-240ENST00000631023 GPR82Q96P67 336 aa15.32■□□□□ 0.04
CLN3-240ENST00000631023 MGST2Q99735 147 aa15.32■□□□□ 0.04
CLN3-240ENST00000631023 ARL6Q9H0F7 186 aa15.32■□□□□ 0.04
CLN3-240ENST00000631023 RNF24Q9Y225 148 aa15.32■□□□□ 0.04
CLN3-240ENST00000631023 RPL35AP18077 110 aaKnown RBP15.32■□□□□ 0.04
CLN3-240ENST00000631023 GALR1P47211 349 aa15.32■□□□□ 0.04
CLN3-240ENST00000631023 CAMLGP49069 296 aa15.32■□□□□ 0.04
CLN3-240ENST00000631023 EWSR1Q01844 656 aaKnown RBP eCLIP15.32■□□□□ 0.04
CLN3-240ENST00000631023 NHLH2Q02577 135 aa15.32■□□□□ 0.04
CLN3-240ENST00000631023 BAXQ07812 192 aa15.32■□□□□ 0.04
CLN3-240ENST00000631023 LEMD1Q68G75 181 aa15.32■□□□□ 0.04
CLN3-240ENST00000631023 SLC25A39Q9BZJ4 359 aaPredicted RBP15.32■□□□□ 0.04
CLN3-240ENST00000631023 WDR83OSQ9Y284 106 aa15.32■□□□□ 0.04
CLN3-240ENST00000631023 UBE2L5PA0A1B0GUS4 154 aa15.31■□□□□ 0.04
CLN3-240ENST00000631023 RNF126Q9BV68 326 aa15.31■□□□□ 0.04
CLN3-240ENST00000631023 CXCL3P19876 107 aa15.3■□□□□ 0.04
CLN3-240ENST00000631023 ID1P41134 155 aa15.3■□□□□ 0.04
CLN3-240ENST00000631023 SAMD13Q5VXD3 122 aa15.3■□□□□ 0.04
CLN3-240ENST00000631023 Q6ZRG5 221 aa15.3■□□□□ 0.04
CLN3-240ENST00000631023 STHQ8IWL8 128 aa15.3■□□□□ 0.04
CLN3-240ENST00000631023 OR5C1Q8NGR4 320 aa15.3■□□□□ 0.04
CLN3-240ENST00000631023 SHANK2-AS3Q9BTD1 123 aa15.3■□□□□ 0.04
CLN3-240ENST00000631023 H3BRN7 92 aa15.29■□□□□ 0.04
CLN3-240ENST00000631023 MPDU1O75352 247 aa15.29■□□□□ 0.04
CLN3-240ENST00000631023 MEOX2P50222 304 aa15.29■□□□□ 0.04
CLN3-240ENST00000631023 PSMG4Q5JS54 123 aa15.29■□□□□ 0.04
CLN3-240ENST00000631023 SLC25A32Q9H2D1 315 aa15.29■□□□□ 0.04
CLN3-240ENST00000631023 ELOA3CA0A087WX78 387 aaPredicted RBP15.28■□□□□ 0.04
CLN3-240ENST00000631023 Q6ZWC4 215 aa15.28■□□□□ 0.04
CLN3-240ENST00000631023 SCRT1Q9BWW7 348 aa15.28■□□□□ 0.04
CLN3-240ENST00000631023 CSTL1Q9H114 145 aa15.28■□□□□ 0.04
CLN3-240ENST00000631023 ARV1Q9H2C2 271 aa15.28■□□□□ 0.04
CLN3-240ENST00000631023 RPL7P18124 248 aaKnown RBP15.28■□□□□ 0.04
CLN3-240ENST00000631023 FGF7P21781 194 aa15.28■□□□□ 0.04
CLN3-240ENST00000631023 OXA1LQ15070 435 aa15.28■□□□□ 0.04
CLN3-240ENST00000631023 FCN2Q15485 313 aa15.28■□□□□ 0.04
CLN3-240ENST00000631023 THAP6Q8TBB0 222 aa15.28■□□□□ 0.04
CLN3-240ENST00000631023 CHAC2Q8WUX2 184 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms