RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 RABL2AQ9UBK7 228 aaPredicted RBP17.73■□□□□ 0.43
PTPRF-216ENST00000617451 SCP2D1Q9UJQ7 156 aa17.73■□□□□ 0.43
PTPRF-216ENST00000617451 RABL2BQ9UNT1 228 aa17.73■□□□□ 0.43
PTPRF-216ENST00000617451 ABCA13Q86UQ4 5058 aa17.72■□□□□ 0.43
PTPRF-216ENST00000617451 MUC4Q99102 2169 aa17.72■□□□□ 0.43
PTPRF-216ENST00000617451 SNRPGP15A8MWD9 76 aa17.72■□□□□ 0.43
PTPRF-216ENST00000617451 ISLRO14498 428 aa17.72■□□□□ 0.43
PTPRF-216ENST00000617451 FABP1P07148 127 aa17.72■□□□□ 0.43
PTPRF-216ENST00000617451 PSG9Q00887 426 aa17.72■□□□□ 0.43
PTPRF-216ENST00000617451 SPCS2Q15005 226 aa17.72■□□□□ 0.43
PTPRF-216ENST00000617451 GSG1LQ6UXU4 331 aa17.72■□□□□ 0.43
PTPRF-216ENST00000617451 GOLT1BQ9Y3E0 138 aa17.72■□□□□ 0.43
PTPRF-216ENST00000617451 IGLV2-18A0A075B6J9 118 aa17.71■□□□□ 0.43
PTPRF-216ENST00000617451 AKR1C4P17516 323 aa17.71■□□□□ 0.43
PTPRF-216ENST00000617451 OXA1LQ15070 435 aa17.71■□□□□ 0.43
PTPRF-216ENST00000617451 FAM78BQ5VT40 261 aa17.71■□□□□ 0.43
PTPRF-216ENST00000617451 C1orf158Q8N1D5 194 aa17.71■□□□□ 0.43
PTPRF-216ENST00000617451 F6UB75 175 aa17.7■□□□□ 0.42
PTPRF-216ENST00000617451 OR2F1Q13607 317 aa17.7■□□□□ 0.42
PTPRF-216ENST00000617451 EBLN2Q6P2I7 272 aa17.7■□□□□ 0.42
PTPRF-216ENST00000617451 OR8I2Q8N0Y5 310 aa17.7■□□□□ 0.42
PTPRF-216ENST00000617451 TRGV9Q99603 122 aa17.7■□□□□ 0.42
PTPRF-216ENST00000617451 A0A0J9YX75 114 aa17.69■□□□□ 0.42
PTPRF-216ENST00000617451 HBE1P02100 147 aa17.69■□□□□ 0.42
PTPRF-216ENST00000617451 SRPXP78539 464 aa17.69■□□□□ 0.42
PTPRF-216ENST00000617451 RNF212Q495C1 297 aa17.69■□□□□ 0.42
PTPRF-216ENST00000617451 SAMD13Q5VXD3 122 aa17.69■□□□□ 0.42
PTPRF-216ENST00000617451 OR1S1Q8NH92 325 aa17.69■□□□□ 0.42
PTPRF-216ENST00000617451 PPP1R14BQ96C90 147 aa17.69■□□□□ 0.42
PTPRF-216ENST00000617451 YTHDF2Q9Y5A9 579 aaKnown RBP17.69■□□□□ 0.42
PTPRF-216ENST00000617451 IGKV1OR2-108A0A075B7D4 117 aa17.68■□□□□ 0.42
PTPRF-216ENST00000617451 LOC102723971A0A1B0GUV8 181 aa17.68■□□□□ 0.42
PTPRF-216ENST00000617451 ANXA3P12429 323 aa17.68■□□□□ 0.42
PTPRF-216ENST00000617451 HTN3P15516 51 aa17.68■□□□□ 0.42
PTPRF-216ENST00000617451 GPR141Q7Z602 305 aa17.68■□□□□ 0.42
PTPRF-216ENST00000617451 C7orf50Q9BRJ6 194 aaKnown RBP17.68■□□□□ 0.42
PTPRF-216ENST00000617451 MCUBQ9NWR8 336 aa17.68■□□□□ 0.42
PTPRF-216ENST00000617451 PITX3O75364 302 aa17.67■□□□□ 0.42
PTPRF-216ENST00000617451 ALDH3B2P48448 385 aa17.67■□□□□ 0.42
PTPRF-216ENST00000617451 THAP8Q8NA92 274 aa17.67■□□□□ 0.42
PTPRF-216ENST00000617451 C20orf173Q96LM9 149 aa17.67■□□□□ 0.42
PTPRF-216ENST00000617451 RPRMQ9NS64 109 aa17.67■□□□□ 0.42
PTPRF-216ENST00000617451 A8MTW9 85 aa17.66■□□□□ 0.42
PTPRF-216ENST00000617451 MEOX2P50222 304 aa17.66■□□□□ 0.42
PTPRF-216ENST00000617451 RAB11AP62491 216 aa17.66■□□□□ 0.42
PTPRF-216ENST00000617451 RRN3P1Q2M238 152 aa17.66■□□□□ 0.42
PTPRF-216ENST00000617451 RSL24D1Q9UHA3 163 aaKnown RBP17.66■□□□□ 0.42
PTPRF-216ENST00000617451 PIGBOS1A0A0B4J2F0 54 aa17.65■□□□□ 0.42
PTPRF-216ENST00000617451 TMEM88Q6PEY1 159 aa17.65■□□□□ 0.42
PTPRF-216ENST00000617451 C16orf92Q96LL3 132 aa17.65■□□□□ 0.42
PTPRF-216ENST00000617451 C17orf77Q96MU5 243 aa17.65■□□□□ 0.42
PTPRF-216ENST00000617451 CCDC59Q9P031 241 aaKnown RBP17.65■□□□□ 0.42
PTPRF-216ENST00000617451 DOK5Q9P104 306 aa17.65■□□□□ 0.42
PTPRF-216ENST00000617451 DUXBA0A1W2PPF3 345 aa17.64■□□□□ 0.41
PTPRF-216ENST00000617451 CFDP00746 253 aaPredicted RBP17.64■□□□□ 0.41
PTPRF-216ENST00000617451 IAPPP10997 89 aa17.64■□□□□ 0.41
PTPRF-216ENST00000617451 GALR1P47211 349 aa17.64■□□□□ 0.41
PTPRF-216ENST00000617451 SOHLH1Q5JUK2 328 aa17.64■□□□□ 0.41
PTPRF-216ENST00000617451 AMTNQ6UX39 209 aa17.64■□□□□ 0.41
PTPRF-216ENST00000617451 DYNC2LI1Q8TCX1 351 aa17.64■□□□□ 0.41
PTPRF-216ENST00000617451 IGF2BP2-AS1Q96M15 143 aa17.64■□□□□ 0.41
PTPRF-216ENST00000617451 MRPS26Q9BYN8 205 aaKnown RBP17.64■□□□□ 0.41
PTPRF-216ENST00000617451 MAGT1Q9H0U3 335 aa17.64■□□□□ 0.41
PTPRF-216ENST00000617451 SLC25A32Q9H2D1 315 aa17.64■□□□□ 0.41
PTPRF-216ENST00000617451 DAD1P61803 113 aa17.63■□□□□ 0.41
PTPRF-216ENST00000617451 GGNBP1Q5YKI7 109 aa17.63■□□□□ 0.41
PTPRF-216ENST00000617451 SOSTQ9BQB4 213 aa17.63■□□□□ 0.41
PTPRF-216ENST00000617451 RSG1Q9BU20 258 aa17.63■□□□□ 0.41
PTPRF-216ENST00000617451 SLC45A2Q9UMX9 530 aa17.63■□□□□ 0.41
PTPRF-216ENST00000617451 NACAE9PAV3 2078 aa17.63■□□□□ 0.41
PTPRF-216ENST00000617451 ZNF98A6NK75 572 aa17.62■□□□□ 0.41
PTPRF-216ENST00000617451 TMEM208Q9BTX3 173 aa17.62■□□□□ 0.41
PTPRF-216ENST00000617451 PAIP2BQ9ULR5 123 aaKnown RBP17.62■□□□□ 0.41
PTPRF-216ENST00000617451 HSPG2P98160 4391 aa17.62■□□□□ 0.41
PTPRF-216ENST00000617451 SLC25A6P12236 298 aa17.61■□□□□ 0.41
PTPRF-216ENST00000617451 C1orf134Q5TEV5 83 aa17.61■□□□□ 0.41
PTPRF-216ENST00000617451 OR4D5Q8NGN0 318 aa17.61■□□□□ 0.41
PTPRF-216ENST00000617451 SLC25A22Q9H936 323 aa17.61■□□□□ 0.41
PTPRF-216ENST00000617451 PRSS46E5RG02 174 aa17.6■□□□□ 0.41
PTPRF-216ENST00000617451 TMEM128Q5BJH2 165 aa17.6■□□□□ 0.41
PTPRF-216ENST00000617451 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa17.6■□□□□ 0.41
PTPRF-216ENST00000617451 LRTM2Q8N967 370 aa17.6■□□□□ 0.41
PTPRF-216ENST00000617451 RAB2BQ8WUD1 216 aa17.6■□□□□ 0.41
PTPRF-216ENST00000617451 MED6O75586 246 aa17.59■□□□□ 0.41
PTPRF-216ENST00000617451 TMED4Q7Z7H5 227 aa17.59■□□□□ 0.41
PTPRF-216ENST00000617451 ZNF575Q86XF7 245 aa17.59■□□□□ 0.41
PTPRF-216ENST00000617451 C15orf53Q8NAA6 179 aa17.59■□□□□ 0.41
PTPRF-216ENST00000617451 CIB3Q96Q77 187 aaPredicted RBP17.59■□□□□ 0.41
PTPRF-216ENST00000617451 FABP12A6NFH5 140 aa17.58■□□□□ 0.4
PTPRF-216ENST00000617451 TNFSF8P32971 234 aa17.58■□□□□ 0.4
PTPRF-216ENST00000617451 CNN1P51911 297 aaKnown RBP17.58■□□□□ 0.4
PTPRF-216ENST00000617451 FAM3BP58499 235 aaPredicted RBP17.58■□□□□ 0.4
PTPRF-216ENST00000617451 RPP30P78346 268 aaKnown RBP17.58■□□□□ 0.4
PTPRF-216ENST00000617451 TMEM182Q6ZP80 229 aaPredicted RBP17.58■□□□□ 0.4
PTPRF-216ENST00000617451 OR11H7Q8NGC8 314 aa17.58■□□□□ 0.4
PTPRF-216ENST00000617451 OR1B1Q8NGR6 318 aa17.58■□□□□ 0.4
PTPRF-216ENST00000617451 GPR82Q96P67 336 aa17.58■□□□□ 0.4
PTPRF-216ENST00000617451 TMED3Q9Y3Q3 217 aa17.58■□□□□ 0.4
PTPRF-216ENST00000617451 CRXO43186 299 aaPredicted RBP17.57■□□□□ 0.4
PTPRF-216ENST00000617451 PRM2P04554 102 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms