RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 GCSAMLQ5JQS6 135 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 SOHLH1Q5JUK2 328 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 MIR17HGQ75NE6 70 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 CCDC28AQ8IWP9 274 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 RXFP4Q8TDU9 374 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 TCEAL7Q9BRU2 100 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 NIPSNAP3BQ9BS92 247 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 ELOVL1Q9BW60 279 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 SEC11CQ9BY50 192 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 OR51M1Q9H341 326 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 AAMDCQ9H7C9 122 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 ZNF702PQ9H963 129 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 SEPSECSQ9HD40 501 aaKnown RBP4.83□□□□□ -1.64
LIG3-206ENST00000586058 KLK9Q9UKQ9 250 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 PUS1Q9Y606 427 aaKnown RBP eCLIP4.83□□□□□ -1.64
LIG3-206ENST00000586058 MED13LQ71F56 2210 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.82□□□□□ -1.64
LIG3-206ENST00000586058 A0A1W2PS18 150 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 TMEM218A2RU14 115 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 LINC01548A6NM66 108 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 TMEM250H0YL14 139 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 H3BRN7 92 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 K7EQM0 130 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 NDUFA4O00483 81 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 PAGE4O60829 102 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 GGCTO75223 188 aaKnown RBP4.82□□□□□ -1.64
LIG3-206ENST00000586058 IGKV1-17P01599 117 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 IGLV1-40P01703 118 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 IGHV3-11P01762 117 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 LGALS1P09382 135 aaKnown RBP4.82□□□□□ -1.64
LIG3-206ENST00000586058 OR10J4P0C629 311 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 NPPCP23582 126 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 PPIFP30405 207 aaKnown RBP4.82□□□□□ -1.64
LIG3-206ENST00000586058 GALR1P47211 349 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 MEOX2P50222 304 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 PMS2P11Q13670 270 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 FAM106AQ4KMX7 169 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 FAM74A3Q4VXF1 159 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 SSX7Q7RTT5 188 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 OR8I2Q8N0Y5 310 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 KLHDC1Q8N7A1 406 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 CMTM2Q8TAZ6 248 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 RPUSD4Q96CM3 377 aaKnown RBP4.82□□□□□ -1.64
LIG3-206ENST00000586058 CCDC140Q96MF4 163 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 C20orf24Q9BUV8 137 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 SLC25A39Q9BZJ4 359 aaPredicted RBP4.82□□□□□ -1.64
LIG3-206ENST00000586058 GSX1Q9H4S2 264 aaPredicted RBP4.82□□□□□ -1.64
LIG3-206ENST00000586058 MRPL36Q9P0J6 103 aaKnown RBP4.82□□□□□ -1.64
LIG3-206ENST00000586058 PEF1Q9UBV8 284 aaKnown RBP4.82□□□□□ -1.64
LIG3-206ENST00000586058 PRELID1Q9Y255 219 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 GCN1Q92616 2671 aaKnown RBP4.82□□□□□ -1.64
LIG3-206ENST00000586058 FBN2P35556 2912 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 NAV2Q8IVL1 2488 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 APCP25054 2843 aa4.82□□□□□ -1.64
LIG3-206ENST00000586058 KRTAP9-6A0A140TA67 174 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 A0A1W2PRE2 83 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 WI2-2373I1.2A0A1W2PRP0 233 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 ZNF727A8MUV8 499 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 M0R036 132 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 CD5P06127 495 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 CTSGP08311 255 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 PSMB8P28062 276 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 CSN1S1P47710 185 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 CNN1P51911 297 aaKnown RBP4.81□□□□□ -1.64
LIG3-206ENST00000586058 UBE2G1P62253 170 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 PSG9Q00887 426 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 CFHR3Q02985 330 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 PNRC1Q12796 327 aaPredicted RBP4.81□□□□□ -1.64
LIG3-206ENST00000586058 ICAM4Q14773 271 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 ZNF674Q2M3X9 581 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 SPATA31B1PQ5VZV4 182 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 ZNF343Q6P1L6 599 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 ZNF329Q86UD4 541 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 Q8N2B8 174 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 ZNF491Q8N8L2 437 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 BLNKQ8WV28 456 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 TMEM37Q8WXS4 190 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 DPF1Q92782 380 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 UBE2E2Q96LR5 201 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 LINC00052Q96N35 136 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 SMIM7Q9BQ49 75 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 SHANK2-AS3Q9BTD1 123 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 SCRT1Q9BWW7 348 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 SLC25A2Q9BXI2 301 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 TMPRSS5Q9H3S3 457 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 TMEM14CQ9P0S9 112 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 UFC1Q9Y3C8 167 aa4.81□□□□□ -1.64
LIG3-206ENST00000586058 CREBBPQ92793 2442 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 IGHV3-35A0A0C4DH35 117 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 A0A1B0GUS0 222 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 ZNF320A2RRD8 509 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 HELTA6NFD8 242 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 ZNF98A6NK75 572 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 FAM74A7A6NL05 159 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 ADARB2-AS1A8MUL3 147 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 INAFM1C9JVW0 142 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 PPP5D1E7EU14 171 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 SLC25A5P05141 298 aaKnown RBP4.8□□□□□ -1.64
LIG3-206ENST00000586058 SRP19P09132 144 aaKnown RBP4.8□□□□□ -1.64
LIG3-206ENST00000586058 PYYP10082 97 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms