RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 ZNF680Q8NEM1 530 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 AICDAQ9GZX7 198 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 IFT22Q9H7X7 185 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 PGPEP1Q9NXJ5 209 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 FNDC1Q4ZHG4 1894 aaPredicted RBP2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 GAGE12BA1L429 117 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 F8W735 103 aaPredicted RBP2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 PIN1P1O15428 100 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 GAGE7O76087 117 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 CD74P04233 296 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 ATP5G1P05496 136 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 LGALS1P09382 135 aaKnown RBP2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 GAGE12FP0CL80 117 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 GAGE12GP0CL81 117 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 GAGE12IP0CL82 117 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 HOXA5P20719 270 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 ATP5G3P48201 142 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 C6orf226Q5I0X4 101 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 LINC00114Q6XXX2 140 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 Q6ZWC4 215 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 LINC00469Q8N7U9 141 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 TMEM190Q8WZ59 177 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 TMEM14BQ9NUH8 114 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 ALPK3Q96L96 1907 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 IGKV2D-24A0A075B6R9 120 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 SHISA9B4DS77 424 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 IGLL5B9A064 214 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 NDUFB4O95168 129 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 LYPD3O95274 346 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 MT-ND6P03923 174 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 STAG3L2P0CL84 134 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 IER3P46695 156 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 GZMMP51124 257 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 PAX9P55771 341 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 HILS1P60008 231 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 RND3P61587 244 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 PSG3Q16557 428 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 GCSAMLQ5JQS6 135 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 RASL11AQ6T310 242 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 TOMM20LQ6UXN7 152 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 SH2D6Q7Z4S9 175 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 SMIM12Q96EX1 92 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 HS3ST6Q96QI5 342 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 SPAG8Q99932 426 aaPredicted RBP2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 NPCDR1Q9BY65 106 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 ALX4Q9H161 411 aaPredicted RBP2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 Q9H3A6 140 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 MED13Q9UHV7 2174 aa2.38□□□□□ -2.03
SMCHD1-203ENST00000577880 COL4A1P02462 1669 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 A0A1B0GTI1 187 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 G3V318 75 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 H0YJW9 148 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 NDUFA4O00483 81 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 PEX7O00628 323 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 TMEM50AO95807 157 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 PFN1P07737 140 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 ARL14EPLP0DKL9 152 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 GCHFRP30047 84 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 RPL15P61313 204 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 TTC32Q5I0X7 151 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 NDUFA11Q86Y39 141 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 ISOC2Q96AB3 205 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 FMC1Q96HJ9 113 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 C12orf57Q99622 126 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 F11RQ9Y624 299 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 FREM1Q5H8C1 2179 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 FREM3P0C091 2139 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 SHANK1Q9Y566 2161 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 IGLV3-9A0A075B6K5 115 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 IGKV1D-17A0A075B6S4 117 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 IGKV1OR2-108A0A075B7D4 117 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 IGKV3D-20A0A0C4DH25 116 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 LINC01549A6NIU2 74 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 FAM90A9PA6NNJ1 464 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 HLA-DQB1P01920 261 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 ZNF138P52744 262 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 CFHR3Q02985 330 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 JOSD1Q15040 202 aaPredicted RBP2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 ZNF876PQ49A33 203 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 PRR31Q5SQ13 230 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 C10orf55Q5SWW7 151 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 TMEM91Q6ZNR0 172 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 NKAPP1Q8N9T2 125 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 PHLDA1Q8WV24 401 aaPredicted RBP2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 PHYHIPLQ96FC7 376 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 SCGB3A1Q96QR1 104 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 C1orf43Q9BWL3 253 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 GGTLC1Q9BX51 225 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 SLC25A39Q9BZJ4 359 aaPredicted RBP2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 CSTL1Q9H114 145 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 SIGLEC8Q9NYZ4 499 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 KAAG1Q9UBP8 84 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 MGAMO43451 1857 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 TICRRQ7Z2Z1 1910 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 A0A1B0GW15 77 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 DNAJC9-AS1A6NH13 148 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 CD28P10747 220 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 LOXP28300 417 aaPredicted RBP2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 LINC00158P58513 81 aa2.37□□□□□ -2.03
SMCHD1-203ENST00000577880 RUNX1Q01196 453 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 128 ms