RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 EWSR1Q01844 656 aaKnown RBP eCLIP5.02□□□□□ -1.61
VPS53-213ENST00000572334 ZNF266Q14584 549 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 LRRC37A5PQ49AS3 106 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 TMEM268Q5VZI3 342 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 LEMD1Q68G75 181 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 CLEC19AQ6UXS0 136 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 UNQ9165/PRO28630Q6UXU0 137 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 TMEM61Q8N0U2 210 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 OVOL2Q9BRP0 275 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 ST6GALNAC5Q9BVH7 336 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 SLC2A9Q9NRM0 540 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 FBXL7Q9UJT9 491 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 RBM7Q9Y580 266 aaKnown RBP5.02□□□□□ -1.61
VPS53-213ENST00000572334 VPS13DQ5THJ4 4388 aa5.02□□□□□ -1.61
VPS53-213ENST00000572334 IGLC7A0M8Q6 106 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 E5RGE8 158 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 YIF1AO95070 293 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 IFNA1P01562 189 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 MBPP02686 304 aaPredicted RBP5.01□□□□□ -1.61
VPS53-213ENST00000572334 REG1AP05451 166 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 CTXN2P0C2S0 81 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 RD3LP0DJH9 198 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 FAM3BP58499 235 aaPredicted RBP5.01□□□□□ -1.61
VPS53-213ENST00000572334 AARDQ4LEZ3 155 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 TM4SF20Q53R12 229 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 KHDC3LQ587J8 217 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 COA6Q5JTJ3 125 aaKnown RBP5.01□□□□□ -1.61
VPS53-213ENST00000572334 C1orf194Q5T5A4 169 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 GVQW1Q8N7I0 195 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 SLC35G3Q8N808 338 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 OR4S2Q8NH73 311 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 DYNLRB2Q8TF09 96 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 SECTM1Q8WVN6 248 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 GNPNAT1Q96EK6 184 aaPredicted RBP5.01□□□□□ -1.61
VPS53-213ENST00000572334 FAM210BQ96KR6 192 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 IMMP2LQ96T52 175 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 HSD17B10Q99714 261 aaKnown RBP5.01□□□□□ -1.61
VPS53-213ENST00000572334 TMEM208Q9BTX3 173 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 SLC25A31Q9H0C2 315 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 TMEM231Q9H6L2 316 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 CCL28Q9NRJ3 127 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 BET1LQ9NYM9 111 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 TECRQ9NZ01 308 aaKnown RBP5.01□□□□□ -1.61
VPS53-213ENST00000572334 ANXA10Q9UJ72 324 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 ZFP30Q9Y2G7 519 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 NSG2Q9Y328 171 aa5.01□□□□□ -1.61
VPS53-213ENST00000572334 TRBV24-1A0A075B6N3 115 aa5□□□□□ -1.61
VPS53-213ENST00000572334 ZNF705GA8MUZ8 300 aaPredicted RBP5□□□□□ -1.61
VPS53-213ENST00000572334 F8W735 103 aaPredicted RBP5□□□□□ -1.61
VPS53-213ENST00000572334 CYB5BO43169 146 aa5□□□□□ -1.61
VPS53-213ENST00000572334 TNFSF12O43508 249 aa5□□□□□ -1.61
VPS53-213ENST00000572334 HIST1H2BKO60814 126 aa5□□□□□ -1.61
VPS53-213ENST00000572334 ACTL6BO94805 426 aa5□□□□□ -1.61
VPS53-213ENST00000572334 SCAF4O95104 1147 aaKnown RBP5□□□□□ -1.61
VPS53-213ENST00000572334 SFT2D2O95562 160 aa5□□□□□ -1.61
VPS53-213ENST00000572334 PMP2P02689 132 aa5□□□□□ -1.61
VPS53-213ENST00000572334 CLEC3BP05452 202 aa5□□□□□ -1.61
VPS53-213ENST00000572334 HIST1H2BJP06899 126 aa5□□□□□ -1.61
VPS53-213ENST00000572334 HIST1H2BOP23527 126 aa5□□□□□ -1.61
VPS53-213ENST00000572334 RPL12P30050 165 aaKnown RBP5□□□□□ -1.61
VPS53-213ENST00000572334 HIST1H2BBP33778 126 aa5□□□□□ -1.61
VPS53-213ENST00000572334 ARL3P36405 182 aa5□□□□□ -1.61
VPS53-213ENST00000572334 MFAP2P55001 183 aa5□□□□□ -1.61
VPS53-213ENST00000572334 HIST1H2BDP58876 126 aa5□□□□□ -1.61
VPS53-213ENST00000572334 TAS2R46P59540 309 aa5□□□□□ -1.61
VPS53-213ENST00000572334 HIST1H2BCP62807 126 aa5□□□□□ -1.61
VPS53-213ENST00000572334 RPL8P62917 257 aaKnown RBP5□□□□□ -1.61
VPS53-213ENST00000572334 MSMO1Q15800 293 aa5□□□□□ -1.61
VPS53-213ENST00000572334 POU2AF1Q16633 256 aa5□□□□□ -1.61
VPS53-213ENST00000572334 HIST2H2BEQ16778 126 aa5□□□□□ -1.61
VPS53-213ENST00000572334 ATP6V1FQ16864 119 aa5□□□□□ -1.61
VPS53-213ENST00000572334 TMEM183BQ1AE95 376 aa5□□□□□ -1.61
VPS53-213ENST00000572334 HIST2H2BFQ5QNW6 126 aaPredicted RBP5□□□□□ -1.61
VPS53-213ENST00000572334 OR4A47Q6IF82 309 aa5□□□□□ -1.61
VPS53-213ENST00000572334 KCNIP4Q6PIL6 250 aa5□□□□□ -1.61
VPS53-213ENST00000572334 ZNF66Q6ZN08 573 aa5□□□□□ -1.61
VPS53-213ENST00000572334 ZNF502Q8TBZ5 544 aa5□□□□□ -1.61
VPS53-213ENST00000572334 ORAOV1Q8WV07 137 aa5□□□□□ -1.61
VPS53-213ENST00000572334 HIST1H2BHQ93079 126 aa5□□□□□ -1.61
VPS53-213ENST00000572334 SMIM12Q96EX1 92 aa5□□□□□ -1.61
VPS53-213ENST00000572334 HIST1H2BNQ99877 126 aa5□□□□□ -1.61
VPS53-213ENST00000572334 HIST1H2BMQ99879 126 aa5□□□□□ -1.61
VPS53-213ENST00000572334 SLC5A7Q9GZV3 580 aa5□□□□□ -1.61
VPS53-213ENST00000572334 CYTL1Q9NRR1 136 aa5□□□□□ -1.61
VPS53-213ENST00000572334 C14orf166Q9Y224 244 aaKnown RBP5□□□□□ -1.61
VPS53-213ENST00000572334 RBFOX3A6NFN3 312 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 UPK2O00526 184 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 RBFOX2O43251 390 aaKnown RBP eCLIP4.99□□□□□ -1.61
VPS53-213ENST00000572334 S1PR2O95136 353 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 PPYP01298 95 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 GZMBP10144 247 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 G0S2P27469 103 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 FCGR2CP31995 323 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 LPAR6P43657 344 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 P2RY1P47900 373 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 RND2P52198 227 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 VAMP2P63027 116 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 PAFAH1B2P68402 229 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 PPP1R1AQ13522 171 aa4.99□□□□□ -1.61
VPS53-213ENST00000572334 ELOBQ15370 118 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms