RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 SHPKQ9UHJ6 478 aa11.99□□□□□ -0.49
CLN3-211ENST00000564091 HSPG2P98160 4391 aa11.99□□□□□ -0.49
CLN3-211ENST00000564091 ANKRD20A5PA0PJZ0 165 aa11.98□□□□□ -0.49
CLN3-211ENST00000564091 SNRPGP15A8MWD9 76 aa11.98□□□□□ -0.49
CLN3-211ENST00000564091 CTDSPLO15194 276 aa11.98□□□□□ -0.49
CLN3-211ENST00000564091 ZNF79Q15937 498 aa11.98□□□□□ -0.49
CLN3-211ENST00000564091 C1orf194Q5T5A4 169 aa11.98□□□□□ -0.49
CLN3-211ENST00000564091 Q6ZR54 194 aa11.98□□□□□ -0.49
CLN3-211ENST00000564091 OR8I2Q8N0Y5 310 aa11.98□□□□□ -0.49
CLN3-211ENST00000564091 PPP1R14BQ96C90 147 aa11.98□□□□□ -0.49
CLN3-211ENST00000564091 FAM210BQ96KR6 192 aa11.98□□□□□ -0.49
CLN3-211ENST00000564091 CLUHP3Q96NS8 147 aa11.98□□□□□ -0.49
CLN3-211ENST00000564091 C7orf50Q9BRJ6 194 aaKnown RBP11.98□□□□□ -0.49
CLN3-211ENST00000564091 GOLT1BQ9Y3E0 138 aa11.98□□□□□ -0.49
CLN3-211ENST00000564091 YTHDF2Q9Y5A9 579 aaKnown RBP11.98□□□□□ -0.49
CLN3-211ENST00000564091 LOC102723971A0A1B0GUV8 181 aa11.97□□□□□ -0.49
CLN3-211ENST00000564091 HBE1P02100 147 aa11.97□□□□□ -0.49
CLN3-211ENST00000564091 EBLN2Q6P2I7 272 aa11.97□□□□□ -0.49
CLN3-211ENST00000564091 OR1S1Q8NH92 325 aa11.97□□□□□ -0.49
CLN3-211ENST00000564091 C20orf173Q96LM9 149 aa11.97□□□□□ -0.49
CLN3-211ENST00000564091 SCGB3A2Q96PL1 93 aa11.97□□□□□ -0.49
CLN3-211ENST00000564091 MCUBQ9NWR8 336 aa11.97□□□□□ -0.49
CLN3-211ENST00000564091 SCP2D1Q9UJQ7 156 aa11.97□□□□□ -0.49
CLN3-211ENST00000564091 A0A0J9YX75 114 aa11.96□□□□□ -0.49
CLN3-211ENST00000564091 TEX48A0A1B0GUV7 120 aa11.96□□□□□ -0.49
CLN3-211ENST00000564091 ISLRO14498 428 aa11.96□□□□□ -0.49
CLN3-211ENST00000564091 IAPPP10997 89 aa11.96□□□□□ -0.49
CLN3-211ENST00000564091 PAX9P55771 341 aa11.96□□□□□ -0.49
CLN3-211ENST00000564091 ATP5IP56385 69 aaPredicted RBP11.96□□□□□ -0.49
CLN3-211ENST00000564091 PAIP2BQ9ULR5 123 aaKnown RBP11.96□□□□□ -0.49
CLN3-211ENST00000564091 IGKV1OR2-108A0A075B7D4 117 aa11.95□□□□□ -0.5
CLN3-211ENST00000564091 FABP1P07148 127 aa11.95□□□□□ -0.5
CLN3-211ENST00000564091 RRN3P1Q2M238 152 aa11.95□□□□□ -0.5
CLN3-211ENST00000564091 SPATA31B1PQ5VZV4 182 aa11.95□□□□□ -0.5
CLN3-211ENST00000564091 TMEM88Q6PEY1 159 aa11.95□□□□□ -0.5
CLN3-211ENST00000564091 GPR141Q7Z602 305 aa11.95□□□□□ -0.5
CLN3-211ENST00000564091 C16orf92Q96LL3 132 aa11.95□□□□□ -0.5
CLN3-211ENST00000564091 C17orf77Q96MU5 243 aa11.95□□□□□ -0.5
CLN3-211ENST00000564091 TRGV9Q99603 122 aa11.95□□□□□ -0.5
CLN3-211ENST00000564091 MAGT1Q9H0U3 335 aa11.95□□□□□ -0.5
CLN3-211ENST00000564091 PITX3O75364 302 aa11.94□□□□□ -0.5
CLN3-211ENST00000564091 PRM2P04554 102 aa11.94□□□□□ -0.5
CLN3-211ENST00000564091 ANXA3P12429 323 aa11.94□□□□□ -0.5
CLN3-211ENST00000564091 OXA1LQ15070 435 aa11.94□□□□□ -0.5
CLN3-211ENST00000564091 ZNF575Q86XF7 245 aa11.94□□□□□ -0.5
CLN3-211ENST00000564091 RSG1Q9BU20 258 aa11.94□□□□□ -0.5
CLN3-211ENST00000564091 SLC25A22Q9H936 323 aa11.94□□□□□ -0.5
CLN3-211ENST00000564091 RPRMQ9NS64 109 aa11.94□□□□□ -0.5
CLN3-211ENST00000564091 DNAH5Q8TE73 4624 aa11.93□□□□□ -0.5
CLN3-211ENST00000564091 ALDH3B2P48448 385 aa11.93□□□□□ -0.5
CLN3-211ENST00000564091 DAD1P61803 113 aa11.93□□□□□ -0.5
CLN3-211ENST00000564091 RAB11AP62491 216 aa11.93□□□□□ -0.5
CLN3-211ENST00000564091 SRPXP78539 464 aa11.93□□□□□ -0.5
CLN3-211ENST00000564091 RNF212Q495C1 297 aa11.93□□□□□ -0.5
CLN3-211ENST00000564091 THAP8Q8NA92 274 aa11.93□□□□□ -0.5
CLN3-211ENST00000564091 TMEM208Q9BTX3 173 aa11.93□□□□□ -0.5
CLN3-211ENST00000564091 SLC25A32Q9H2D1 315 aa11.93□□□□□ -0.5
CLN3-211ENST00000564091 DOK5Q9P104 306 aa11.93□□□□□ -0.5
CLN3-211ENST00000564091 RABL2AQ9UBK7 228 aaPredicted RBP11.93□□□□□ -0.5
CLN3-211ENST00000564091 RABL2BQ9UNT1 228 aa11.93□□□□□ -0.5
CLN3-211ENST00000564091 GATA2P23769 480 aaPredicted RBP11.92□□□□□ -0.5
CLN3-211ENST00000564091 GALR1P47211 349 aa11.92□□□□□ -0.5
CLN3-211ENST00000564091 SOHLH1Q5JUK2 328 aa11.92□□□□□ -0.5
CLN3-211ENST00000564091 IGFL4Q6B9Z1 124 aa11.92□□□□□ -0.5
CLN3-211ENST00000564091 AMTNQ6UX39 209 aa11.92□□□□□ -0.5
CLN3-211ENST00000564091 TMEM182Q6ZP80 229 aaPredicted RBP11.92□□□□□ -0.5
CLN3-211ENST00000564091 TMED4Q7Z7H5 227 aa11.92□□□□□ -0.5
CLN3-211ENST00000564091 IGF2BP2-AS1Q96M15 143 aa11.92□□□□□ -0.5
CLN3-211ENST00000564091 RSL24D1Q9UHA3 163 aaKnown RBP11.92□□□□□ -0.5
CLN3-211ENST00000564091 ZNF98A6NK75 572 aa11.91□□□□□ -0.5
CLN3-211ENST00000564091 ORM2P19652 201 aa11.91□□□□□ -0.5
CLN3-211ENST00000564091 C1orf134Q5TEV5 83 aa11.91□□□□□ -0.5
CLN3-211ENST00000564091 SAMD13Q5VXD3 122 aa11.91□□□□□ -0.5
CLN3-211ENST00000564091 DYNC2LI1Q8TCX1 351 aa11.91□□□□□ -0.5
CLN3-211ENST00000564091 MRPS26Q9BYN8 205 aaKnown RBP11.91□□□□□ -0.5
CLN3-211ENST00000564091 KRTAP4-5Q9BYR2 181 aa11.91□□□□□ -0.5
CLN3-211ENST00000564091 CCDC59Q9P031 241 aaKnown RBP11.91□□□□□ -0.5
CLN3-211ENST00000564091 A8MTW9 85 aa11.9□□□□□ -0.5
CLN3-211ENST00000564091 ZNF705GA8MUZ8 300 aaPredicted RBP11.9□□□□□ -0.5
CLN3-211ENST00000564091 MEOX2P50222 304 aa11.9□□□□□ -0.5
CLN3-211ENST00000564091 CNN1P51911 297 aaKnown RBP11.9□□□□□ -0.5
CLN3-211ENST00000564091 GGNBP1Q5YKI7 109 aa11.9□□□□□ -0.5
CLN3-211ENST00000564091 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.9□□□□□ -0.5
CLN3-211ENST00000564091 SOSTQ9BQB4 213 aa11.9□□□□□ -0.5
CLN3-211ENST00000564091 TMED3Q9Y3Q3 217 aa11.9□□□□□ -0.5
CLN3-211ENST00000564091 TRAV8-2A0A0B4J237 113 aa11.89□□□□□ -0.51
CLN3-211ENST00000564091 FABP12A6NFH5 140 aa11.89□□□□□ -0.51
CLN3-211ENST00000564091 M0R2Z0 102 aa11.89□□□□□ -0.51
CLN3-211ENST00000564091 WRBO00258 174 aa11.89□□□□□ -0.51
CLN3-211ENST00000564091 CFDP00746 253 aaPredicted RBP11.89□□□□□ -0.51
CLN3-211ENST00000564091 TNFSF8P32971 234 aa11.89□□□□□ -0.51
CLN3-211ENST00000564091 SPINK13Q1W4C9 94 aa11.89□□□□□ -0.51
CLN3-211ENST00000564091 RNF182Q8N6D2 247 aa11.89□□□□□ -0.51
CLN3-211ENST00000564091 OR11H7Q8NGC8 314 aa11.89□□□□□ -0.51
CLN3-211ENST00000564091 DUXBA0A1W2PPF3 345 aa11.88□□□□□ -0.51
CLN3-211ENST00000564091 PRSS46E5RG02 174 aa11.88□□□□□ -0.51
CLN3-211ENST00000564091 CRXO43186 299 aaPredicted RBP11.88□□□□□ -0.51
CLN3-211ENST00000564091 DEFB130BP0DP73 79 aa11.88□□□□□ -0.51
CLN3-211ENST00000564091 DEFB130AP0DP74 79 aa11.88□□□□□ -0.51
CLN3-211ENST00000564091 VAMP1P23763 118 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms