RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 HYPMO75409 117 aa7.62□□□□□ -1.19
USP3-216ENST00000559873 OR5G3P0C626 314 aa7.62□□□□□ -1.19
USP3-216ENST00000559873 EDN2P20800 178 aa7.62□□□□□ -1.19
USP3-216ENST00000559873 RPL29P47914 159 aaKnown RBP7.62□□□□□ -1.19
USP3-216ENST00000559873 PLP1P60201 277 aa7.62□□□□□ -1.19
USP3-216ENST00000559873 B2MP61769 119 aa7.62□□□□□ -1.19
USP3-216ENST00000559873 PAFAH1B2P68402 229 aa7.62□□□□□ -1.19
USP3-216ENST00000559873 ZNF345Q14585 488 aa7.62□□□□□ -1.19
USP3-216ENST00000559873 GUCA2BQ16661 112 aa7.62□□□□□ -1.19
USP3-216ENST00000559873 Q5BKY6 102 aa7.62□□□□□ -1.19
USP3-216ENST00000559873 ADAMTSL5Q6ZMM2 481 aa7.62□□□□□ -1.19
USP3-216ENST00000559873 TMEM61Q8N0U2 210 aa7.62□□□□□ -1.19
USP3-216ENST00000559873 OR1L4Q8NGR5 311 aa7.62□□□□□ -1.19
USP3-216ENST00000559873 ST8SIA2Q92186 375 aa7.62□□□□□ -1.19
USP3-216ENST00000559873 GPR82Q96P67 336 aa7.62□□□□□ -1.19
USP3-216ENST00000559873 GGTLC1Q9BX51 225 aa7.62□□□□□ -1.19
USP3-216ENST00000559873 WDR61Q9GZS3 305 aaKnown RBP7.62□□□□□ -1.19
USP3-216ENST00000559873 MFFQ9GZY8 342 aa7.62□□□□□ -1.19
USP3-216ENST00000559873 PXMP4Q9Y6I8 212 aa7.62□□□□□ -1.19
USP3-216ENST00000559873 SORL1Q92673 2214 aa7.62□□□□□ -1.19
USP3-216ENST00000559873 ELOA3CA0A087WX78 387 aaPredicted RBP7.61□□□□□ -1.19
USP3-216ENST00000559873 RNF222A6NCQ9 220 aa7.61□□□□□ -1.19
USP3-216ENST00000559873 HMSDA8MTL9 139 aa7.61□□□□□ -1.19
USP3-216ENST00000559873 G3V3Q6 166 aa7.61□□□□□ -1.19
USP3-216ENST00000559873 TAAR5O14804 337 aa7.61□□□□□ -1.19
USP3-216ENST00000559873 TSPAN4O14817 238 aa7.61□□□□□ -1.19
USP3-216ENST00000559873 BUB3O43684 328 aa7.61□□□□□ -1.19
USP3-216ENST00000559873 GP9P14770 177 aa7.61□□□□□ -1.19
USP3-216ENST00000559873 GATA2P23769 480 aaPredicted RBP7.61□□□□□ -1.19
USP3-216ENST00000559873 RPL11P62913 178 aaKnown RBP7.61□□□□□ -1.19
USP3-216ENST00000559873 C1orf194Q5T5A4 169 aa7.61□□□□□ -1.19
USP3-216ENST00000559873 SAMD13Q5VXD3 122 aa7.61□□□□□ -1.19
USP3-216ENST00000559873 TCF24Q7RTU0 167 aa7.61□□□□□ -1.19
USP3-216ENST00000559873 RNF2Q99496 336 aa7.61□□□□□ -1.19
USP3-216ENST00000559873 ARL6Q9H0F7 186 aa7.61□□□□□ -1.19
USP3-216ENST00000559873 ARV1Q9H2C2 271 aa7.61□□□□□ -1.19
USP3-216ENST00000559873 SLC39A9Q9NUM3 307 aa7.61□□□□□ -1.19
USP3-216ENST00000559873 DOK5Q9P104 306 aa7.61□□□□□ -1.19
USP3-216ENST00000559873 TRAV2A0A0B4J234 112 aa7.6□□□□□ -1.19
USP3-216ENST00000559873 IGHV3-66A0A0C4DH42 116 aa7.6□□□□□ -1.19
USP3-216ENST00000559873 A0A0D9SG52 128 aa7.6□□□□□ -1.19
USP3-216ENST00000559873 SMLR1H3BR10 107 aa7.6□□□□□ -1.19
USP3-216ENST00000559873 GALR1P47211 349 aa7.6□□□□□ -1.19
USP3-216ENST00000559873 PRR20EP86478 221 aa7.6□□□□□ -1.19
USP3-216ENST00000559873 PRR20CP86479 221 aa7.6□□□□□ -1.19
USP3-216ENST00000559873 PRR20DP86480 221 aa7.6□□□□□ -1.19
USP3-216ENST00000559873 PRR20BP86481 221 aa7.6□□□□□ -1.19
USP3-216ENST00000559873 PRR20AP86496 221 aa7.6□□□□□ -1.19
USP3-216ENST00000559873 C10orf113Q5VZT2 155 aa7.6□□□□□ -1.19
USP3-216ENST00000559873 MIC13Q5XKP0 118 aa7.6□□□□□ -1.19
USP3-216ENST00000559873 C16orf54Q6UWD8 224 aa7.6□□□□□ -1.19
USP3-216ENST00000559873 SIGLEC15Q6ZMC9 328 aa7.6□□□□□ -1.19
USP3-216ENST00000559873 OR8I2Q8N0Y5 310 aa7.6□□□□□ -1.19
USP3-216ENST00000559873 ST6GAL2Q96JF0 529 aa7.6□□□□□ -1.19
USP3-216ENST00000559873 SLC25A39Q9BZJ4 359 aaPredicted RBP7.6□□□□□ -1.19
USP3-216ENST00000559873 TIMM9Q9Y5J7 89 aa7.6□□□□□ -1.19
USP3-216ENST00000559873 U3KQE9 123 aa7.6□□□□□ -1.19
USP3-216ENST00000559873 FBN3Q75N90 2809 aa7.6□□□□□ -1.19
USP3-216ENST00000559873 KANTRA0A1W2PQU2 76 aa7.59□□□□□ -1.19
USP3-216ENST00000559873 H3BRN7 92 aa7.59□□□□□ -1.19
USP3-216ENST00000559873 DNASE2O00115 360 aaPredicted RBP7.59□□□□□ -1.19
USP3-216ENST00000559873 PFDN1O60925 122 aa7.59□□□□□ -1.19
USP3-216ENST00000559873 JTBO76095 146 aa7.59□□□□□ -1.19
USP3-216ENST00000559873 APOHP02749 345 aaPredicted RBP7.59□□□□□ -1.19
USP3-216ENST00000559873 RPL7P18124 248 aaKnown RBP7.59□□□□□ -1.19
USP3-216ENST00000559873 C4BPBP20851 252 aa7.59□□□□□ -1.19
USP3-216ENST00000559873 CMC4P56277 68 aaPredicted RBP7.59□□□□□ -1.19
USP3-216ENST00000559873 KRTAP10-11P60412 298 aa7.59□□□□□ -1.19
USP3-216ENST00000559873 EIF5AP63241 154 aaKnown RBP7.59□□□□□ -1.19
USP3-216ENST00000559873 TMEM182Q6ZP80 229 aaPredicted RBP7.59□□□□□ -1.19
USP3-216ENST00000559873 LINC00305Q7Z4B0 112 aa7.59□□□□□ -1.19
USP3-216ENST00000559873 STXBP6Q8NFX7 210 aa7.59□□□□□ -1.19
USP3-216ENST00000559873 GATAD1Q8WUU5 269 aa7.59□□□□□ -1.19
USP3-216ENST00000559873 GLMPQ8WWB7 406 aa7.59□□□□□ -1.19
USP3-216ENST00000559873 GNPNAT1Q96EK6 184 aaPredicted RBP7.59□□□□□ -1.19
USP3-216ENST00000559873 HYLS1Q96M11 299 aa7.59□□□□□ -1.19
USP3-216ENST00000559873 PRR25Q96S07 402 aa7.59□□□□□ -1.19
USP3-216ENST00000559873 ARPC5LQ9BPX5 153 aa7.59□□□□□ -1.19
USP3-216ENST00000559873 NEURL2Q9BR09 285 aa7.59□□□□□ -1.19
USP3-216ENST00000559873 SHANK2-AS3Q9BTD1 123 aa7.59□□□□□ -1.19
USP3-216ENST00000559873 SLC25A22Q9H936 323 aa7.59□□□□□ -1.19
USP3-216ENST00000559873 AURKAIP1Q9NWT8 199 aaPredicted RBP7.59□□□□□ -1.19
USP3-216ENST00000559873 IZUMO1RA6ND01 250 aa7.58□□□□□ -1.2
USP3-216ENST00000559873 ZNF98A6NK75 572 aa7.58□□□□□ -1.2
USP3-216ENST00000559873 C1QBP02746 253 aa7.58□□□□□ -1.2
USP3-216ENST00000559873 MEOX2P50222 304 aa7.58□□□□□ -1.2
USP3-216ENST00000559873 CD81P60033 236 aa7.58□□□□□ -1.2
USP3-216ENST00000559873 ZFP69Q49AA0 526 aa7.58□□□□□ -1.2
USP3-216ENST00000559873 KCNRGQ8N5I3 272 aa7.58□□□□□ -1.2
USP3-216ENST00000559873 HSD17B11Q8NBQ5 300 aa7.58□□□□□ -1.2
USP3-216ENST00000559873 PSMG3Q9BT73 122 aaPredicted RBP7.58□□□□□ -1.2
USP3-216ENST00000559873 RSG1Q9BU20 258 aa7.58□□□□□ -1.2
USP3-216ENST00000559873 SCRT1Q9BWW7 348 aa7.58□□□□□ -1.2
USP3-216ENST00000559873 MRPL32Q9BYC8 188 aaKnown RBP7.58□□□□□ -1.2
USP3-216ENST00000559873 DNAJC4Q9NNZ3 241 aa7.58□□□□□ -1.2
USP3-216ENST00000559873 NRN1Q9NPD7 142 aa7.58□□□□□ -1.2
USP3-216ENST00000559873 IGKV3-7A0A075B6H7 116 aa7.57□□□□□ -1.2
USP3-216ENST00000559873 ZNF785A8K8V0 405 aa7.57□□□□□ -1.2
USP3-216ENST00000559873 BCL2L11O43521 198 aa7.57□□□□□ -1.2
USP3-216ENST00000559873 MBP02144 154 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms