RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 FOXA3P55318 350 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-213ENST00000552720 COX19Q49B96 90 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 EBLN2Q6P2I7 272 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 RNASEKQ6P5S7 137 aaKnown RBP5.99□□□□□ -1.45
LIMA1-213ENST00000552720 Q8NA96 180 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 OR4B1Q8NGF8 309 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 ZNF596Q8TC21 504 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 GTSF1Q8WW33 167 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 URB1-AS1Q96HZ7 61 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 DYNLRB1Q9NP97 96 aa5.99□□□□□ -1.45
LIMA1-213ENST00000552720 MED13LQ71F56 2210 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 ATRXP46100 2492 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 VSTM5A8MXK1 200 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 SHISA9B4DS77 424 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 HYPMO75409 117 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 HSBP1O75506 76 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 CRYGCP07315 174 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 GP9P14770 177 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 RPL27AP46776 148 aaKnown RBP5.98□□□□□ -1.45
LIMA1-213ENST00000552720 ZNF137PP52743 207 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 WIPF2Q8TF74 440 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-213ENST00000552720 BORCS7Q96B45 105 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 PERPQ96FX8 193 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 ALKBH7Q9BT30 221 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-213ENST00000552720 TMEM133Q9H2Q1 129 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 PTPRQQ9UMZ3 2332 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 DLEU1O43261 78 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 IGLC2P0DOY2 106 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 IGLC3P0DOY3 106 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 HIST1H1EP10412 219 aaKnown RBP5.98□□□□□ -1.45
LIMA1-213ENST00000552720 COX7A1P24310 79 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 Q56UQ5 140 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 C16orf54Q6UWD8 224 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 GFRALQ6UXV0 394 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 Q6ZVH6 145 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 EXOC3-AS1Q8N2X6 119 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 PGLYRP4Q96LB8 373 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 MLST8Q9BVC4 326 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 Q9H3A6 140 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 FBXL15Q9H469 300 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 CLEC5AQ9NY25 188 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 ZNF835Q9Y2P0 537 aa5.98□□□□□ -1.45
LIMA1-213ENST00000552720 MAP1AP78559 2803 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-213ENST00000552720 IGHV2-26A0A0B4J1V2 119 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 A0A1B0GXF2 115 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 FAM181BA6NEQ2 426 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 M0QZK8 103 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 M0R2Z0 102 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 CRYGBP07316 175 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 PSG1P11464 419 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 SFTPCP11686 197 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 MC5RP33032 325 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 LYZP61626 148 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 FAM71F2Q6NXP2 309 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 Q6ZN92 141 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 CIARTQ8N365 385 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-213ENST00000552720 STPG4Q8N801 248 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 GPR82Q96P67 336 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 MRPL27Q9P0M9 148 aaKnown RBP5.97□□□□□ -1.45
LIMA1-213ENST00000552720 SIGLEC9Q9Y336 463 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 CACNA1BQ00975 2339 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 IGF2RP11717 2491 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 IGHV1-3A0A0C4DH29 117 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 IGHV1-69-2A0A0G2JMI3 117 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 TEX22C9J3V5 150 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 IGLV1-47P01700 117 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 TCRAP04437 139 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 LDLRAD2Q5SZI1 272 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 LINC00173Q6ZV60 143 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 SSX8Q7RTT4 187 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 C8orf31Q8N9H6 132 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 TMEM116Q8NCL8 245 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 C17orf77Q96MU5 243 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 TRGV9Q99603 122 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 TXN2Q99757 166 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 RPP21Q9H633 154 aaKnown RBP5.97□□□□□ -1.45
LIMA1-213ENST00000552720 JKAMPQ9P055 326 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 KLF12Q9Y4X4 402 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 S4R3C0 116 aa5.97□□□□□ -1.45
LIMA1-213ENST00000552720 COL12A1Q99715 3063 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 C2orf70A6NJV1 201 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 LY6HO94772 140 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 LGALS7P47929 136 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 ZNF138P52744 262 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 ANKRD39Q53RE8 183 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 RASL11AQ6T310 242 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 PPP1R27Q86WC6 154 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 KAAG1Q9UBP8 84 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 INSIG2Q9Y5U4 225 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 VPS13CQ709C8 3753 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 C19orf71A6NCJ1 209 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 OR2J3O76001 311 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 TOMM40O96008 361 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 LTAP01374 205 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 RBP4P02753 201 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 KLF5Q13887 457 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-213ENST00000552720 FBLN7Q53RD9 439 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 PVRIGQ6DKI7 326 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 ETFRF1Q6IPR1 90 aa5.96□□□□□ -1.46
LIMA1-213ENST00000552720 ASCL5Q7RTU5 278 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms