RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 CXorf58Q96LI9 332 aa3.31□□□□□ -1.88
CD44-226ENST00000527889 TMEM208Q9BTX3 173 aa3.31□□□□□ -1.88
CD44-226ENST00000527889 NDUFAF3Q9BU61 184 aa3.31□□□□□ -1.88
CD44-226ENST00000527889 SMIM3Q9BZL3 60 aa3.31□□□□□ -1.88
CD44-226ENST00000527889 RBKSQ9H477 322 aa3.31□□□□□ -1.88
CD44-226ENST00000527889 C11orf1Q9H5F2 150 aa3.31□□□□□ -1.88
CD44-226ENST00000527889 HEXA-AS1Q9H8Q6 139 aa3.31□□□□□ -1.88
CD44-226ENST00000527889 AGRNO00468 2067 aa3.31□□□□□ -1.88
CD44-226ENST00000527889 NOTCH3Q9UM47 2321 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 IGHV3OR16-10A0A075B7F0 116 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 IGHV1-3A0A0C4DH29 117 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 A0A0D9SG52 128 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 A0A1W2PPI3 338 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 CEBPZOSA8MTT3 80 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 ODF3BA8MYP8 253 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 PPP5D1E7EU14 171 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 F5H768 121 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 LY6LH3BQJ8 138 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 BUB1B-PAK6H3BSN5 160 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 K7ERU9 68 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 SLC17A3O00476 420 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 CYB5BO43169 146 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 RBFOX2O43251 390 aaKnown RBP eCLIP3.3□□□□□ -1.88
CD44-226ENST00000527889 SYNGR2O43760 224 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 FOXH1O75593 365 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 CST7O76096 145 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 ATG12O94817 140 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 HRASP01112 189 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 SAA1P0DJI8 122 aaPredicted RBP3.3□□□□□ -1.88
CD44-226ENST00000527889 SLC25A6P12236 298 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 PAX1P15863 534 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 PVALBP20472 110 aaPredicted RBP3.3□□□□□ -1.88
CD44-226ENST00000527889 PRTN3P24158 256 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 IL3RAP26951 378 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 CNTFRP26992 372 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 AKR1C3P42330 323 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 DYNLT3P51808 116 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 ZNF137PP52743 207 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 DVL1P1P54792 670 aaPredicted RBP3.3□□□□□ -1.88
CD44-226ENST00000527889 PAX9P55771 341 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 ZNF616Q08AN1 781 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 ZNF415Q09FC8 603 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 TMEM267Q0VDI3 215 aaPredicted RBP3.3□□□□□ -1.88
CD44-226ENST00000527889 OR2F1Q13607 317 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 ZNF345Q14585 488 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 TPTE2P1Q5T6R2 138 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 C10orf25Q5T742 122 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 OR4A47Q6IF82 309 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 DYNAPQ8N1N2 210 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 KIR3DL3Q8N743 410 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 RPEQ96AT9 228 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 BTF3L4Q96K17 158 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 AQP10Q96PS8 301 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 TBX15Q96SF7 602 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 ZNF471Q9BX82 626 aaPredicted RBP3.3□□□□□ -1.88
CD44-226ENST00000527889 PRSS22Q9GZN4 317 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 WFDC1Q9HC57 220 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 SPANXB1Q9NS25 103 aaPredicted RBP3.3□□□□□ -1.88
CD44-226ENST00000527889 WASHC3Q9Y3C0 194 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 AMMECR1Q9Y4X0 333 aaPredicted RBP3.3□□□□□ -1.88
CD44-226ENST00000527889 HILPDAQ9Y5L2 63 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 INSIG2Q9Y5U4 225 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 ANK3Q12955 4377 aaKnown RBP3.3□□□□□ -1.88
CD44-226ENST00000527889 ANK2Q01484 3957 aa3.3□□□□□ -1.88
CD44-226ENST00000527889 A0A096LNT2 108 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 PIGBOS1A0A0B4J2F0 54 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 C15orf61A6NNL5 157 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 C15orf62A8K5M9 175 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 LEUTXA8MZ59 168 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 UPK2O00526 184 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 PPP1R2P9O14990 202 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 PDE6DO43924 150 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 SNAPC5O75971 98 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 GAGE7O76087 117 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 KBTBD11O94819 623 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 IFNA7P01567 189 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 IFNA17P01571 189 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 IGLV2-23P01705 113 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 GAPDHP04406 335 aaKnown RBP3.29□□□□□ -1.88
CD44-226ENST00000527889 GAGE12FP0CL80 117 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 GAGE12GP0CL81 117 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 GAGE12IP0CL82 117 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 IGHV4-30-4P0DP06 118 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 SLC25A16P16260 332 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 USF1P22415 310 aaPredicted RBP3.29□□□□□ -1.88
CD44-226ENST00000527889 CD24P25063 80 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 HTR1DP28221 377 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 RPL13AP40429 203 aaKnown RBP3.29□□□□□ -1.88
CD44-226ENST00000527889 P2RY1P47900 373 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 AMTP48728 403 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 TCTAP57738 103 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 DSCR9P59020 149 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 PKIAP61925 76 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 RPL32P62910 135 aaKnown RBP3.29□□□□□ -1.88
CD44-226ENST00000527889 UBA52P62987 128 aaKnown RBP3.29□□□□□ -1.88
CD44-226ENST00000527889 EWSR1Q01844 656 aaKnown RBP eCLIP3.29□□□□□ -1.88
CD44-226ENST00000527889 PAX8Q06710 450 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 ARL16Q0P5N6 197 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 GAGE4Q13068 117 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 CLINT1Q14677 625 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms