RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 MEIG1Q5JSS6 88 aa6.37□□□□□ -1.39
LIMCH1-219ENST00000514096 TMEM217Q8N7C4 229 aa6.37□□□□□ -1.39
LIMCH1-219ENST00000514096 ZNF485Q8NCK3 441 aa6.37□□□□□ -1.39
LIMCH1-219ENST00000514096 OR1L1Q8NH94 360 aa6.37□□□□□ -1.39
LIMCH1-219ENST00000514096 C8orf46Q8TAG6 207 aa6.37□□□□□ -1.39
LIMCH1-219ENST00000514096 RPEQ96AT9 228 aa6.37□□□□□ -1.39
LIMCH1-219ENST00000514096 RTBDNQ9BSG5 229 aaPredicted RBP6.37□□□□□ -1.39
LIMCH1-219ENST00000514096 CYSLTR1Q9Y271 337 aa6.37□□□□□ -1.39
LIMCH1-219ENST00000514096 CSDC2Q9Y534 153 aaKnown RBP6.37□□□□□ -1.39
LIMCH1-219ENST00000514096 IGHV1-69DA0A0B4J2H0 117 aa6.37□□□□□ -1.39
LIMCH1-219ENST00000514096 TAX1BP3O14907 124 aa6.37□□□□□ -1.39
LIMCH1-219ENST00000514096 NPFFO15130 113 aa6.37□□□□□ -1.39
LIMCH1-219ENST00000514096 IGHV1-69P01742 117 aa6.37□□□□□ -1.39
LIMCH1-219ENST00000514096 SSBP2P81877 361 aaPredicted RBP6.37□□□□□ -1.39
LIMCH1-219ENST00000514096 PLGLAQ15195 96 aa6.37□□□□□ -1.39
LIMCH1-219ENST00000514096 KRTAP27-1Q3LI81 207 aa6.37□□□□□ -1.39
LIMCH1-219ENST00000514096 FA2HQ7L5A8 372 aa6.37□□□□□ -1.39
LIMCH1-219ENST00000514096 Q8N7P7 452 aa6.37□□□□□ -1.39
LIMCH1-219ENST00000514096 SH3BGRL3Q9H299 93 aa6.37□□□□□ -1.39
LIMCH1-219ENST00000514096 A0A0G2JK05 382 aa6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 SMIM9A6NGZ8 99 aa6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 PPIFP30405 207 aaKnown RBP6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 BLCAPP62952 87 aa6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 ABCA11PQ4W5N1 156 aa6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 DMKNQ6E0U4 476 aaPredicted RBP6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 ZFAND6Q6FIF0 208 aa6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 SGPP2Q8IWX5 399 aa6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 GLMPQ8WWB7 406 aa6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 WDR61Q9GZS3 305 aaKnown RBP6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 A0A1B0GWB2 263 aa6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 LHBP01229 141 aa6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 SLC25A4P12235 298 aa6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 EFNB2P52799 333 aa6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 LGI3Q8N145 548 aa6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 DYNAPQ8N1N2 210 aa6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 DUX3Q96PT4 197 aa6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 UHRF2Q96PU4 802 aa6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 LOC107984640A0A0U1RRK4 108 aa6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 FOXI3A8MTJ6 420 aaPredicted RBP6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 J3QRE1 110 aa6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 K7N7A8 449 aa6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 IGLC1P0CG04 106 aa6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 ABHD14BQ96IU4 210 aa6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 F11RQ9Y624 299 aaKnown RBP6.36□□□□□ -1.39
LIMCH1-219ENST00000514096 ANK3Q12955 4377 aaKnown RBP6.35□□□□□ -1.39
LIMCH1-219ENST00000514096 TRAV24A0A0B4J272 114 aa6.35□□□□□ -1.39
LIMCH1-219ENST00000514096 FXYD4P59646 89 aa6.35□□□□□ -1.39
LIMCH1-219ENST00000514096 RPS11P62280 158 aaKnown RBP eCLIP6.35□□□□□ -1.39
LIMCH1-219ENST00000514096 Q6ZS46 218 aa6.35□□□□□ -1.39
LIMCH1-219ENST00000514096 H2BFWTQ7Z2G1 175 aa6.35□□□□□ -1.39
LIMCH1-219ENST00000514096 ARHGAP5-AS1Q96IT6 56 aa6.35□□□□□ -1.39
LIMCH1-219ENST00000514096 EDA2RQ9HAV5 297 aa6.35□□□□□ -1.39
LIMCH1-219ENST00000514096 ZNF253O75346 499 aa6.35□□□□□ -1.39
LIMCH1-219ENST00000514096 SLC35E4Q6ICL7 350 aa6.35□□□□□ -1.39
LIMCH1-219ENST00000514096 OR5B3Q8NH48 314 aa6.35□□□□□ -1.39
LIMCH1-219ENST00000514096 COQ2Q96H96 371 aa6.35□□□□□ -1.39
LIMCH1-219ENST00000514096 V9GY05 133 aa6.35□□□□□ -1.39
LIMCH1-219ENST00000514096 CCDC179H3BU77 68 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 MGST3O14880 152 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 HSBP1O75506 76 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 GATA2P23769 480 aaPredicted RBP6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 FCER1GP30273 86 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 HERV-K104P61576 105 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 GNB1P62873 340 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 C10orf99Q6UWK7 81 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 SYT8Q8NBV8 401 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 Q8TCH9 128 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 JMJD8Q96S16 334 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 ZNF355PQ9NSJ1 428 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 TMSB15BA0A087X1C1 80 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 FCN1O00602 326 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 VSIG8P0DPA2 414 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 HKR1P10072 659 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 P2RY1P47900 373 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 PAX8Q06710 450 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 TIGITQ495A1 244 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 TCTEX1D4Q5JR98 221 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 SLC25A34Q6PIV7 304 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 OR13C6PQ8NH95 151 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 TMEM170AQ8WVE7 144 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 FAM3DQ96BQ1 224 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 CYTL1Q9NRR1 136 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 CALYQ9NYX4 217 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 LSM4Q9Y4Z0 139 aaKnown RBP6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 IGLC7A0M8Q6 106 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 H0YIZ8 118 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 CT45A10P0DMU9 189 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 IGHV1-8P0DP01 117 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 PSG3Q16557 428 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 TMEM42Q69YG0 159 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 ZNF286AQ9HBT8 521 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 FBXL7Q9UJT9 491 aa6.34□□□□□ -1.39
LIMCH1-219ENST00000514096 MT-ATP8P03928 68 aa6.33□□□□□ -1.4
LIMCH1-219ENST00000514096 AREGP15514 252 aa6.33□□□□□ -1.4
LIMCH1-219ENST00000514096 CBLN1P23435 193 aa6.33□□□□□ -1.4
LIMCH1-219ENST00000514096 LMO1P25800 156 aa6.33□□□□□ -1.4
LIMCH1-219ENST00000514096 ZNF90Q03938 601 aa6.33□□□□□ -1.4
LIMCH1-219ENST00000514096 ZNF415Q09FC8 603 aa6.33□□□□□ -1.4
LIMCH1-219ENST00000514096 TEX36Q5VZQ5 186 aa6.33□□□□□ -1.4
LIMCH1-219ENST00000514096 TEX43Q6ZNM6 134 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms